Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0011662

Physical Location & Seq

Genomic Coordinates Forward (+)

71851481 .. 71855982

Gene Structure 4502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0529300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3417 bp

ATGGCAATGAGCTCACAAAGACCTTTTCCTTCAAGTCGGTGGAAATATGATGTTTTTCTCAGTTTTAGAGGTGATGACACCCGCAAGGGTTTTACAGACCATTTGTACACTGCATTGGAGAGTCATGGAATAACAACCTTCAGGGATGACCCTAAACTTGAAAAAGGGAAATCTATTTCTCCACAACTTTTAACTGCAATTGAAGAATCGAGGTTTGGGCTCATTGTTCTCTCGCGAAATTATGCGTCATCCACATGGTGTTTAGATGAACTCTTAAAAATTCTTGAATGCATGGAGACAAGAGAGTCAGTGCTGCCAATTTTTTATGATGTTGATCCCTCTGATGCAAGAAAACAAACGGGGAGTTTTGCAGAAGCCTTTGCTAAACATGACATGTATAGAGATGACAAAGACAAGGTGCGAAGTTGGAGATGTGGTTTAACCAAATTGGCAAATATCTCTGGTTGGAATTCAGCAGATTGGCATGAATCAAAGCTAATCGATGAGATTGCTGAAGTGATATGGGCAAAATTGCGCCCTTCATTTATGCTCAACTCGATGGAGGATTTTGTAGGAATTGAATCCAAGTTCAACAAATTACGGTTTCTATTATGTTCATCGGTGGATGATGTTCGCTTTGTTGGGATATGGGGGATGGGTGGAATTGGAAAGACAACTCTTGCCAGAGCTCTTTACGGCAATATGTCTCATGAATATCAATTCAGTACCTTTCTCCCCAATGTTAGAAGTATTAGTGATGGGATGAATGGTCTATGTCACTTACAAAAGAAACTCCTCTCGGGGATAGGGATGATAAAGGACGACATATGGGACCCTCATGAAGGAGTCGCACTGATCAGGAGATATTTATATCACAAAAAGGTCCTTCTCATTCTTGATGATGTAAACAATATGGACCAGTTAGAGTATCTGGCTGGAAAGCAAGAATGGTTTTGTCCTGGGAGCAGAATTGTCATTACGACTAGAGATGAGCATTTGTTAATCGCACATGGAGTGCAGAGAAGATTTAAGGTTGAGGGACTACCTAATTCTCAAGCACTTAAACTTTTTAGTCTGAAAGCCTTTAAGAAGGATTATCCTCCAGATGATTACCTTGGTTTGTCAAGACGTGTTGTGCATTATGCCAAAGGTCTTCCGCTAGCTGTTAAGGTTTTGGGATCTTTTCTGCATGGAAGAAGGCTAAGTGCGTGGAATAGCACATTGGGAAAACTGAGTGAAGTTTTCAACTCGGAAATTTTGGAGATACTTAAAATAAGTTATGACGGTCTACGTGATAATGAGAAGAAAATTTTCCTTGACATTGCATGCTTTTTTAATGGGGATCACAAAGATCAAGTAATAAAGACTCTGGACAATTGCGGTAATAGTGCAAGTATTGGAATAGATGTTCTTGTTGAGAGATCTCTCTTAACTGTTACATATAGTCAAATTTTGATGCATGACTTGTTACAAGAAATGGGTCGGGAACTTGTCTGTCGAGAATCTCCAGATGAGCCAGGTGGGCGTAGCAGGTTGTGGCACTGGGAGGACGTTAATCATGTCTTGAGCAAAAACACAGGAACAGGAGGAATAGAAAGCATACTTGTGAATCCAGCCAAGTCAAGAATGGTCATGCATGTGATTCATGCGAATGCGAAGTCCTTTTTGATGATGAGCAAGCTGAGACTTCTAATTATCAATGATGTGAACCTCGCAAATGGGCTTGAATGTTTTCCTGATGATTTACGAGTTATTGAATGGAGTGGGTATCCTCTGAAATATTTCCCGTCACACTTCAATCCAGAGAAGCTATTAGAACTTAACATGAGTCACAGCCACATTGAACATTTCTGGACGGGAATAAAGGCTTTATACAAGTTGAGAAGCATTAATCTCTGTCACTCTTTGAGTCTAATTGACACCCCAGACTTCAGAGGTATGCCATATCTGGAGTGTCTGATTCTTGAAGGTTGTATACAGTTATATAGGGTTCATTCCTCGCTTGGAACTCTAGAAAGACTTACTCTAATAAACTTGAGAAATTGTACAAACCTTGTACATTTTCCAAGCAGTGTATGTGGTTTAAAATCTCTTAAGGTTCTTGATGTTTCTGGTTGCTCAAGGCTTCAAAAACTGCCAGACGACTTGGGTTGTGCAGAGTGCTTGGAGGAGCTTGATGTGAGTGGAACTGCTATAAGAGAACCACCTCCGTCTATTGGTCTTTTGAAAAATCTTAAAGAATTATCTTGCCGTGGGTGTAAAGCTGCATCACCTAAACCTTGGTATATGCGTTTACCTTTTGGGTTATCGCTGGAAAGAAGTCAGGATCCATCATCTAAATTTTGGAATATGATTCCTTTTCGGCTATCGCTGGCAAGAACTCCACATCCCACATCTTGGGCGCCTCGTTCTTTTGCTAGTTTGCGTTCCTTAGTAAAATTGGATCTAACTGACTGCAATCTTTTCGAAGGAGCAATCCCCAACGACATCAGCTGCATGGCTTCATTAACGAAATTAAATCTAAGCAGAAACCATTTTGCTAGTCTGCCCAGTAGTATCTTTTATCTTTCCAAGCTTGAAGATCTGAATTTGGAGTATTGCGAGAGGCTGCAAACAATGCCAGCGCTTCCTTCCCAAGTAGAACTGAATGCTTGTAATTGTGTTTCATTGGAAAGATGGTCGGTTCCAATAGAACGATGCAAATTGCTTTTATCAGCAAATTTGACTAATTGTTTCAAGCTGGGGAAGCAGGGCTGTAGGACTCTGGCGCTTACGCTTTTGAAACGATATCTTGAGGGAGTCCCATATCTTTACAGATTAGAAAGTGGGTTGCGTTTTGTTGTCCCTGGAAATGAAATTCCAGACTGGTTCACTTACCAAAGTGTGGGATCTTCAGTTTATGTAGACGTACATCCAGGCTTTAGTGGGATGTACATGGGATTTGCAGGCTGTGCTGTTTTTGAAATCAAAGGGATGGTCAGATTCCGAAAAAGAAAACGAGATGGTCTGGGTACCAGCCGGACATTGAGCCAAGCTGTGTCGCATCACCTTTGGTTTGAGTACACACCTCGTCATATACATTATGAGGATTGGCCAAGGTGGCAACATTGTAGGCGGCTAAAATTTTCATTTGAGTTTGGTGGTCAAGACATAGTGAAGAAGTGTGGGGTTCGGATAGTGTACGAGCCAGATATCCAAAGCTTAAATGAATCGTTGAAAAAGAGTAACTTTGGCACTTCTCCAGATTATGCTTTGAAATTCCCTGGCAAAGCAGCAGCTGTATCTGCAGGTAGCAGTACCAAGTATGGCACCCTTGAACACCATGATGAGGCAGCACCGAGTGGAAGTGGTTACCATGGCTCTATCACTATGGAACCTGATCTGGAAGGATCAGTTGAGTTCCATATTGGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009553 GO:0009657 GO:0009658 GO:0009791 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048316 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051049 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

1138

Amino Acids

128.97

Weight (kDa)

8.3

Isoelectric Point (pI)

47.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	15 - 191	5.5e-53	TIR domain
TIR_2	PF13676	18 - 117	5.2e-15	TIR domain
NB-ARC	PF00931	204 - 365	1.1e-18	NB-ARC domain
WHD_ROQ1	PF23282	432 - 500	2.4e-21	Disease resistance protein Roq1-like, winged-helix domain
LRR_14	PF23598	626 - 753	2.1e-07	Leucine-rich repeat region
C-JID	PF20160	948 - 1065	1.5e-11	C-JID domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0011662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36590 AT5G60440
fragaria_vesca	FvH4_2g03030
malus_domestica	MD05G1107900.v1.1 MD05G1114100.v1.1 MD10G1112300.v1.1
prunus_persica	Prupe.8G151900_v2.0.a1 Prupe.8G158400_v2.0.a1 Prupe.8G158500_v2.0.a1
pyrus_communis	pycom05g10880
rosa_chinensis	RchiOBHm_Chr6g0247821
rosa_laevigata	RLG00000015176
rosa_multiflora	Rmu_sc0001048.1_g000003
rosa_roxburghii	Rroxscaffold_180G00433220 Rroxscaffold_7G00213620
rosa_rugosa	Rorug05G0529300
rosa_samantha	Rh6AG044000 Rh6BG038700 Rh6CG037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	304
Acc36I	ACCTGC	2 cut(s)	1521, 3278
Acc65I	GGTACC	1 cut(s)	3011
AccB1I	GGYRCC	3 cut(s)	2401, 3011, 3308
AccB7I	CCANNNNNTGG	2 cut(s)	2397, 2884
AccI	GTMKAC	3 cut(s)	1288, 1975, 2904
AccII	CGCG	1 cut(s)	235
AciI	CCGC	4 cut(s)	82, 1157, 1380, 3115
AclWI	GGATC	8 cut(s)	329, 1186, 1350, 2321, 2334, 2451, 2896, 3397
AcoI	YGGCCR	1 cut(s)	3092
AcuI	CTGAAG	4 cut(s)	124, 534, 1915, 2877
AcyI	GRCGYC	1 cut(s)	2402
AdeI	CACNNNGTG	2 cut(s)	258, 3341
AfeI	AGCGCT	1 cut(s)	2625
AfiI	CCNNNNNNNGG	5 cut(s)	842, 2216, 2397, 2884, 3328
AflII	CTTAAG	1 cut(s)	2093
AflIII	ACRYGT	2 cut(s)	393, 1129
AjiI	CACGTC	1 cut(s)	1130
AjnI	CCWGG	5 cut(s)	958, 1516, 2845, 2914, 3262
AjuI	GAANNNNNNNTTGG	4 cut(s)	198, 230, 1205, 1237
AloI	GAACNNNNNNTCC	4 cut(s)	1392, 1424, 2371, 2403
Alw21I	GWGCWC	2 cut(s)	14, 691
Alw26I	GTCTC	3 cut(s)	290, 711, 1678
AlwI	GGATC	8 cut(s)	329, 1186, 1350, 2321, 2334, 2451, 2896, 3397
AlwNI	CAGNNNCTG	1 cut(s)	3278
Ama87I	CYCGRG	1 cut(s)	799
Aor51HI	AGCGCT	1 cut(s)	2625
AoxI	GGCC	1 cut(s)	3092
ApeKI	GCWGC	7 cut(s)	313, 2264, 2493, 2608, 3272, 3275, 3332
ArsI	GACNNNNNNTTYG	4 cut(s)	1643, 1675, 2961, 2993
AseI	ATTAAT	1 cut(s)	1890
Asp700I	GAANNNNTTC	3 cut(s)	1310, 1731, 1781
Asp718I	GGTACC	1 cut(s)	3011
AspLEI	GCGC	4 cut(s)	537, 2404, 2626, 2770
AspS9I	GGNCC	3 cut(s)	832, 883, 916
AsuHPI	GGTGA	3 cut(s)	83, 2262, 3038
AsuII	TTCGAA	1 cut(s)	2466
AsuNHI	GCTAGC	1 cut(s)	1159
AvaI	CYCGRG	1 cut(s)	799
AvaII	GGWCC	3 cut(s)	832, 883, 916
BalI	TGGCCA	1 cut(s)	3094
BamHI	GGATCC	1 cut(s)	2326
BanI	GGYRCC	3 cut(s)	2401, 3011, 3308
BanII	GRGCYC	3 cut(s)	14, 222, 691
BarI	GAAGNNNNNNTAC	2 cut(s)	1959, 1991
BbsI	GAAGAC	1 cut(s)	1145
Bbv12I	GWGCWC	2 cut(s)	14, 691
BbvI	GCAGC	7 cut(s)	300, 2251, 2480, 2595, 3284, 3287, 3344
BccI	CCATC	7 cut(s)	553, 649, 752, 2338, 2670, 2968, 2996
BceAI	ACGGC	2 cut(s)	712, 2235
BcgI	CGANNNNNNTGC	4 cut(s)	491, 525, 2446, 2480
BciT130I	CCWGG	5 cut(s)	960, 1518, 2847, 2916, 3264
BciVI	GTATCC	1 cut(s)	1779
BclI	TGATCA	1 cut(s)	855
BcoDI	GTCTC	3 cut(s)	290, 711, 1678
BfaI	CTAG	5 cut(s)	984, 1160, 2012, 2418, 2541
BfmI	CTRYAG	2 cut(s)	2755, 3285
BfoI	RGCGCY	3 cut(s)	2405, 2627, 2771
BfrI	CTTAAG	1 cut(s)	2093
BfuAI	ACCTGC	2 cut(s)	1521, 3278
BfuI	GTATCC	1 cut(s)	1779
BglI	GCCNNNNNGGC	2 cut(s)	1522, 3100
BglII	AGATCT	2 cut(s)	1421, 2581
BisI	GCNGC	8 cut(s)	314, 2265, 2494, 2609, 3116, 3273, 3276, 3333
BlsI	GCNGC	8 cut(s)	315, 2266, 2495, 2610, 3117, 3274, 3277, 3334
Bme1390I	CCNGG	5 cut(s)	960, 1518, 2847, 2916, 3264
Bme18I	GGWCC	3 cut(s)	832, 883, 916
BmeT110I	CYCGRG	1 cut(s)	799
BmgBI	CACGTC	1 cut(s)	1130
BmgT120I	GGNCC	3 cut(s)	832, 883, 916
BmiI	GGNNCC	8 cut(s)	833, 834, 2328, 2403, 2685, 3013, 3310, 3375
BmrFI	CCNGG	5 cut(s)	960, 1518, 2847, 2916, 3264
BmrI	ACTGGG	2 cut(s)	1552, 2544
BmsI	GCATC	5 cut(s)	334, 1446, 2276, 2687, 3052
BmtI	GCTAGC	1 cut(s)	1163
BmuI	ACTGGG	2 cut(s)	1552, 2544
BpiI	GAAGAC	1 cut(s)	1145
BpmI	CTGGAG	4 cut(s)	1086, 1491, 1970, 3225
Bpu14I	TTCGAA	1 cut(s)	2466
BpuEI	CTTGAG	5 cut(s)	1038, 1585, 2056, 2104, 2813
Bsa29I	ATCGAT	1 cut(s)	501
BsaAI	YACGTR	1 cut(s)	1292
BsaBI	GATNNNNATC	1 cut(s)	333
BsaHI	GRCGYC	1 cut(s)	2402
BsaJI	CCNNGG	8 cut(s)	959, 1114, 2251, 2279, 2845, 3095, 3262, 3355
BsaXI	ACNNNNNCTCC	2 cut(s)	421, 451
Bsc4I	CCNNNNNNNGG	5 cut(s)	842, 2216, 2397, 2884, 3328
Bse1I	ACTGG	4 cut(s)	919, 1547, 2550, 2870
Bse3DI	GCAATG	2 cut(s)	12, 1320
Bse8I	GATNNNNATC	1 cut(s)	333
BseBI	CCWGG	5 cut(s)	960, 1518, 2847, 2916, 3264
BseCI	ATCGAT	1 cut(s)	501
BseDI	CCNNGG	8 cut(s)	959, 1114, 2251, 2279, 2845, 3095, 3262, 3355
BseJI	GATNNNNATC	1 cut(s)	333
BseLI	CCNNNNNNNGG	5 cut(s)	842, 2216, 2397, 2884, 3328
BseMI	GCAATG	2 cut(s)	12, 1320
BseMII	CTCAG	3 cut(s)	73, 1223, 1673
BseNI	ACTGG	4 cut(s)	919, 1547, 2550, 2870
BseRI	GAGGAG	2 cut(s)	785, 2183
BseXI	GCAGC	7 cut(s)	300, 2251, 2480, 2595, 3284, 3287, 3344
BseYI	CCCAGC	1 cut(s)	2740
BsgI	GTGCAG	2 cut(s)	1037, 2175
Bsh1236I	CGCG	1 cut(s)	235
BshFI	GGCC	1 cut(s)	3094
BshNI	GGYRCC	3 cut(s)	2401, 3011, 3308
BshVI	ATCGAT	1 cut(s)	501
BsiHKAI	GWGCWC	2 cut(s)	14, 691
BsiHKCI	CYCGRG	1 cut(s)	799
BsiSI	CCGG	1 cut(s)	3019
BslFI	GGGAC	4 cut(s)	845, 1053, 2786, 2828
BslI	CCNNNNNNNGG	5 cut(s)	842, 2216, 2397, 2884, 3328
BsmAI	GTCTC	3 cut(s)	290, 711, 1678
BsmFI	GGGAC	4 cut(s)	845, 1053, 2786, 2828
BsmI	GAATGC	3 cut(s)	293, 1657, 2653
BsnI	GGCC	1 cut(s)	3094
BsoBI	CYCGRG	1 cut(s)	799
Bsp119I	TTCGAA	1 cut(s)	2466
Bsp1286I	GDGCHC	3 cut(s)	14, 222, 691
Bsp1407I	TGTACA	4 cut(s)	105, 2045, 2056, 2931
Bsp19I	CCATGG	1 cut(s)	3355
Bsp68I	TCGCGA	1 cut(s)	235
BspACI	CCGC	4 cut(s)	82, 1157, 1380, 3115
BspANI	GGCC	1 cut(s)	3094
BspCNI	CTCAG	3 cut(s)	72, 1224, 1674
BspDI	ATCGAT	1 cut(s)	501
BspFNI	CGCG	1 cut(s)	235
BspHI	TCATGA	2 cut(s)	709, 838
BspLI	GGNNCC	8 cut(s)	833, 834, 2328, 2403, 2685, 3013, 3310, 3375
BspMAI	CTGCAG	1 cut(s)	3289
BspMI	ACCTGC	2 cut(s)	1521, 3278
BspOI	GCTAGC	1 cut(s)	1163
BspPI	GGATC	8 cut(s)	329, 1186, 1350, 2321, 2334, 2451, 2896, 3397
BspT104I	TTCGAA	1 cut(s)	2466
BspT107I	GGYRCC	3 cut(s)	2401, 3011, 3308
BspTI	CTTAAG	1 cut(s)	2093
BsrDI	GCAATG	2 cut(s)	12, 1320
BsrGI	TGTACA	4 cut(s)	105, 2045, 2056, 2931
BsrI	ACTGG	4 cut(s)	919, 1547, 2550, 2870
BssECI	CCNNGG	8 cut(s)	959, 1114, 2251, 2279, 2845, 3095, 3262, 3355
BssNAI	GTATAC	1 cut(s)	1976
BssNI	GRCGYC	1 cut(s)	2402
BssT1I	CCWWGG	4 cut(s)	1114, 2279, 3095, 3355
Bst1107I	GTATAC	1 cut(s)	1976
Bst2UI	CCWGG	5 cut(s)	960, 1518, 2847, 2916, 3264
Bst4CI	ACNGT	4 cut(s)	603, 1286, 1435, 1980
BstACI	GRCGYC	1 cut(s)	2402
BstAFI	CTTAAG	1 cut(s)	2093
BstAPI	GCANNNNNTGC	2 cut(s)	2617, 2951
BstAUI	TGTACA	4 cut(s)	105, 2045, 2056, 2931
BstBAI	YACGTR	1 cut(s)	1292
BstBI	TTCGAA	1 cut(s)	2466
BstC8I	GCNNGC	6 cut(s)	1161, 1327, 1679, 2373, 2622, 2947
BstDEI	CTNAG	6 cut(s)	59, 1202, 1232, 1682, 2431, 2522
BstDSI	CCRYGG	2 cut(s)	2251, 3355
BstEII	GGTNACC	1 cut(s)	3350
BstENI	CCTNNNNNAGG	1 cut(s)	840
BstFNI	CGCG	1 cut(s)	235
BstH2I	RGCGCY	3 cut(s)	2405, 2627, 2771
BstHHI	GCGC	4 cut(s)	537, 2404, 2626, 2770
BstMAI	GTCTC	3 cut(s)	290, 711, 1678
BstMWI	GCNNNNNNNGC	6 cut(s)	1522, 2617, 2746, 2951, 3100, 3284
BstNI	CCWGG	5 cut(s)	960, 1518, 2847, 2916, 3264
BstNSI	RCATGY	3 cut(s)	397, 1329, 1640
BstPI	GGTNACC	1 cut(s)	3350
BstSCI	CCNGG	5 cut(s)	958, 1516, 2845, 2914, 3262
BstSFI	CTRYAG	2 cut(s)	2755, 3285
BstUI	CGCG	1 cut(s)	235
BstV1I	GCAGC	7 cut(s)	300, 2251, 2480, 2595, 3284, 3287, 3344
BstV2I	GAAGAC	1 cut(s)	1145
BstX2I	RGATCY	6 cut(s)	1178, 1421, 2326, 2443, 2581, 2888
BstYI	RGATCY	6 cut(s)	1178, 1421, 2326, 2443, 2581, 2888
BstZ17I	GTATAC	1 cut(s)	1976
Bsu15I	ATCGAT	1 cut(s)	501
BsuI	GTATCC	1 cut(s)	1779
BsuRI	GGCC	1 cut(s)	3094
BsuTUI	ATCGAT	1 cut(s)	501
BtgI	CCRYGG	2 cut(s)	2251, 3355
BtrI	CACGTC	1 cut(s)	1130
BtsI	GCAGTG	2 cut(s)	108, 2077
BtsIMutI	CAGTG	5 cut(s)	108, 315, 851, 1540, 2077
BtuMI	TCGCGA	1 cut(s)	235
BveI	ACCTGC	2 cut(s)	1521, 3278
Cac8I	GCNNGC	6 cut(s)	1161, 1327, 1679, 2373, 2622, 2947
CaiI	CAGNNNCTG	1 cut(s)	3278
CciI	TCATGA	2 cut(s)	709, 838
CfoI	GCGC	4 cut(s)	537, 2404, 2626, 2770
Cfr13I	GGNCC	3 cut(s)	832, 883, 916
ClaI	ATCGAT	1 cut(s)	501
CseI	GACGC	1 cut(s)	234
DdeI	CTNAG	6 cut(s)	59, 1202, 1232, 1682, 2431, 2522
DinI	GGCGCC	1 cut(s)	2403
DraI	TTTAAA	1 cut(s)	2085
DraIII	CACNNNGTG	2 cut(s)	258, 3341
DrdI	GACNNNNNNGTC	1 cut(s)	304
DseDI	GACNNNNNNGTC	1 cut(s)	304
EaeI	YGGCCR	1 cut(s)	3092
Ecl136II	GAGCTC	2 cut(s)	12, 689
Eco130I	CCWWGG	4 cut(s)	1114, 2279, 3095, 3355
Eco24I	GRGCYC	3 cut(s)	14, 222, 691
Eco32I	GATATC	2 cut(s)	2789, 3193
Eco47I	GGWCC	3 cut(s)	832, 883, 916
Eco47III	AGCGCT	1 cut(s)	2625
Eco53kI	GAGCTC	2 cut(s)	12, 689
Eco57I	CTGAAG	4 cut(s)	124, 534, 1915, 2877
Eco88I	CYCGRG	1 cut(s)	799
Eco91I	GGTNACC	1 cut(s)	3350
EcoICRI	GAGCTC	2 cut(s)	12, 689
EcoNI	CCTNNNNNAGG	1 cut(s)	840
EcoO109I	RGGNCCY	2 cut(s)	832, 883
EcoO65I	GGTNACC	1 cut(s)	3350
EcoRI	GAATTC	1 cut(s)	469
EcoRII	CCWGG	5 cut(s)	958, 1516, 2845, 2914, 3262
EcoRV	GATATC	2 cut(s)	2789, 3193
EcoT14I	CCWWGG	4 cut(s)	1114, 2279, 3095, 3355
EcoT22I	ATGCAT	3 cut(s)	293, 1461, 1638
EcoT38I	GRGCYC	3 cut(s)	14, 222, 691
EgeI	GGCGCC	1 cut(s)	2403
EheI	GGCGCC	1 cut(s)	2403
ErhI	CCWWGG	4 cut(s)	1114, 2279, 3095, 3355
FalI	AAGNNNNNCTT	2 cut(s)	3212, 3244
FaqI	GGGAC	4 cut(s)	845, 1053, 2786, 2828
FauI	CCCGC	1 cut(s)	89
FauNDI	CATATG	1 cut(s)	827
FbaI	TGATCA	1 cut(s)	855
FblI	GTMKAC	3 cut(s)	1288, 1975, 2904
Fnu4HI	GCNGC	8 cut(s)	314, 2265, 2494, 2609, 3116, 3273, 3276, 3333
FriOI	GRGCYC	3 cut(s)	14, 222, 691
Fsp4HI	GCNGC	8 cut(s)	314, 2265, 2494, 2609, 3116, 3273, 3276, 3333
FspBI	CTAG	5 cut(s)	984, 1160, 2012, 2418, 2541
GlaI	GCGC	4 cut(s)	536, 2403, 2625, 2769
GluI	GCNGC	8 cut(s)	314, 2265, 2494, 2609, 3116, 3273, 3276, 3333
GsaI	CCCAGC	1 cut(s)	2744
GsuI	CTGGAG	4 cut(s)	1086, 1491, 1970, 3225
HaeII	RGCGCY	3 cut(s)	2405, 2627, 2771
HaeIII	GGCC	1 cut(s)	3094
HapII	CCGG	1 cut(s)	3019
HgaI	GACGC	1 cut(s)	234
HhaI	GCGC	4 cut(s)	537, 2404, 2626, 2770
Hin1I	GRCGYC	1 cut(s)	2402
Hin6I	GCGC	4 cut(s)	535, 2402, 2624, 2768
HinP1I	GCGC	4 cut(s)	535, 2402, 2624, 2768
HindIII	AAGCTT	2 cut(s)	2573, 3199
HpaII	CCGG	1 cut(s)	3019
HphI	GGTGA	3 cut(s)	83, 2262, 3038
HpyCH4III	ACNGT	4 cut(s)	603, 1286, 1435, 1980
HpyCH4IV	ACGT	4 cut(s)	1129, 1291, 1551, 2907
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1522, 2617, 2746, 2951, 3100, 3284
HpyF3I	CTNAG	6 cut(s)	59, 1202, 1232, 1682, 2431, 2522
HpySE526I	ACGT	4 cut(s)	1129, 1291, 1551, 2907
Hsp92I	GRCGYC	1 cut(s)	2402
HspAI	GCGC	4 cut(s)	535, 2402, 2624, 2768
KasI	GGCGCC	1 cut(s)	2401
KflI	GGGWCCC	1 cut(s)	832
KpnI	GGTACC	1 cut(s)	3015
Ksp22I	TGATCA	1 cut(s)	855
LmnI	GCTCC	3 cut(s)	963, 2170, 2471
Lsp1109I	GCAGC	7 cut(s)	300, 2251, 2480, 2595, 3284, 3287, 3344
LweI	GCATC	5 cut(s)	334, 1446, 2276, 2687, 3052
MaeI	CTAG	5 cut(s)	984, 1160, 2012, 2418, 2541
MaeII	ACGT	4 cut(s)	1129, 1291, 1551, 2907
MaeIII	GTNAC	8 cut(s)	776, 1435, 1467, 1788, 1829, 1898, 3224, 3350
MboII	GAAGA	8 cut(s)	215, 1035, 1145, 1206, 1315, 2591, 2883, 3169
MfeI	CAATTG	2 cut(s)	198, 1375
MflI	RGATCY	6 cut(s)	1178, 1421, 2326, 2443, 2581, 2888
MhlI	GDGCHC	3 cut(s)	14, 222, 691
MlsI	TGGCCA	1 cut(s)	3094
MluNI	TGGCCA	1 cut(s)	3094
Mly113I	GGCGCC	1 cut(s)	2402
MlyI	GAGTC	8 cut(s)	130, 314, 855, 1360, 1837, 1918, 2755, 2808
MmeI	TCCRAC	2 cut(s)	407, 446
Mox20I	TGGCCA	1 cut(s)	3094
Mph1103I	ATGCAT	3 cut(s)	293, 1461, 1638
MroXI	GAANNNNTTC	3 cut(s)	1310, 1731, 1781
MscI	TGGCCA	1 cut(s)	3094
MslI	CAYNNNNRTG	5 cut(s)	253, 1604, 1637, 1650, 3324
Msp20I	TGGCCA	1 cut(s)	3094
MspA1I	CMGCKG	2 cut(s)	2493, 3278
MspCI	CTTAAG	1 cut(s)	2093
MspI	CCGG	1 cut(s)	3019
MspR9I	CCNGG	5 cut(s)	960, 1518, 2847, 2916, 3264
MunI	CAATTG	2 cut(s)	198, 1375
Mva1269I	GAATGC	3 cut(s)	293, 1657, 2653
MvaI	CCWGG	5 cut(s)	960, 1518, 2847, 2916, 3264
MvnI	CGCG	1 cut(s)	235
MwoI	GCNNNNNNNGC	6 cut(s)	1522, 2617, 2746, 2951, 3100, 3284
NarI	GGCGCC	1 cut(s)	2402
NcoI	CCATGG	1 cut(s)	3355
NdeI	CATATG	1 cut(s)	827
NheI	GCTAGC	1 cut(s)	1159
NlaIV	GGNNCC	8 cut(s)	833, 834, 2328, 2403, 2685, 3013, 3310, 3375
NmuCI	GTSAC	4 cut(s)	776, 1788, 1829, 1898
NruI	TCGCGA	1 cut(s)	235
NsiI	ATGCAT	3 cut(s)	293, 1461, 1638
NspI	RCATGY	3 cut(s)	397, 1329, 1640
NspV	TTCGAA	1 cut(s)	2466
PaeI	GCATGC	1 cut(s)	1329
PagI	TCATGA	2 cut(s)	709, 838
PciI	ACATGT	1 cut(s)	393
PctI	GAATGC	3 cut(s)	293, 1657, 2653
PdmI	GAANNNNTTC	3 cut(s)	1310, 1731, 1781
PflMI	CCANNNNNTGG	2 cut(s)	2397, 2884
PkrI	GCNGC	8 cut(s)	315, 2266, 2495, 2610, 3117, 3274, 3277, 3334
PleI	GAGTC	8 cut(s)	129, 313, 854, 1360, 1836, 1917, 2755, 2807
PluTI	GGCGCC	1 cut(s)	2405
PpsI	GAGTC	8 cut(s)	129, 313, 854, 1360, 1836, 1917, 2755, 2807
Ppu21I	YACGTR	1 cut(s)	1292
PpuMI	RGGWCCY	2 cut(s)	832, 883
PscI	ACATGT	1 cut(s)	393
PshBI	ATTAAT	1 cut(s)	1890
Psp124BI	GAGCTC	2 cut(s)	14, 691
Psp5II	RGGWCCY	2 cut(s)	832, 883
Psp6I	CCWGG	5 cut(s)	958, 1516, 2845, 2914, 3262
PspEI	GGTNACC	1 cut(s)	3350
PspFI	CCCAGC	1 cut(s)	2740
PspGI	CCWGG	5 cut(s)	958, 1516, 2845, 2914, 3262
PspN4I	GGNNCC	8 cut(s)	833, 834, 2328, 2403, 2685, 3013, 3310, 3375
PspPI	GGNCC	3 cut(s)	832, 883, 916
PspPPI	RGGWCCY	2 cut(s)	832, 883
PstI	CTGCAG	1 cut(s)	3289
PstNI	CAGNNNCTG	1 cut(s)	3278
PsuI	RGATCY	6 cut(s)	1178, 1421, 2326, 2443, 2581, 2888
PvuII	CAGCTG	2 cut(s)	2493, 3278
RruI	TCGCGA	1 cut(s)	235
RseI	CAYNNNNRTG	5 cut(s)	253, 1604, 1637, 1650, 3324
SacI	GAGCTC	2 cut(s)	14, 691
SatI	GCNGC	8 cut(s)	314, 2265, 2494, 2609, 3116, 3273, 3276, 3333
Sau96I	GGNCC	3 cut(s)	832, 883, 916
SchI	GAGTC	8 cut(s)	130, 314, 855, 1360, 1837, 1918, 2755, 2808
ScrFI	CCNGG	5 cut(s)	960, 1518, 2847, 2916, 3264
SduI	GDGCHC	3 cut(s)	14, 222, 691
SfaNI	GCATC	5 cut(s)	334, 1446, 2276, 2687, 3052
SfcI	CTRYAG	2 cut(s)	2755, 3285
SfoI	GGCGCC	1 cut(s)	2403
SfuI	TTCGAA	1 cut(s)	2466
SinI	GGWCC	3 cut(s)	832, 883, 916
SmiMI	CAYNNNNRTG	5 cut(s)	253, 1604, 1637, 1650, 3324
SmlI	CTYRAG	6 cut(s)	1053, 1564, 2035, 2093, 2119, 2792
SmoI	CTYRAG	6 cut(s)	1053, 1564, 2035, 2093, 2119, 2792
SphI	GCATGC	1 cut(s)	1329
SsiI	CCGC	4 cut(s)	82, 1157, 1380, 3115
SspDI	GGCGCC	1 cut(s)	2401
SspI	AATATT	1 cut(s)	1781
SspMI	CTAG	5 cut(s)	984, 1160, 2012, 2418, 2541
SstI	GAGCTC	2 cut(s)	14, 691
StyD4I	CCNGG	5 cut(s)	958, 1516, 2845, 2914, 3262
StyI	CCWWGG	4 cut(s)	1114, 2279, 3095, 3355
TaaI	ACNGT	4 cut(s)	603, 1286, 1435, 1980
TaiI	ACGT	4 cut(s)	1132, 1294, 1554, 2910
TaqI	TCGA	5 cut(s)	209, 501, 557, 1498, 2466
TatI	WGTACW	5 cut(s)	105, 2045, 2056, 2931, 3060
TauI	GCSGC	1 cut(s)	3118
TscAI	CASTG	5 cut(s)	115, 315, 858, 1547, 2077
TseFI	GTSAC	4 cut(s)	776, 1788, 1829, 1898
TseI	GCWGC	7 cut(s)	313, 2264, 2493, 2608, 3272, 3275, 3332
Tsp45I	GTSAC	4 cut(s)	776, 1788, 1829, 1898
TspGWI	ACGGA	1 cut(s)	2199
TspRI	CASTG	5 cut(s)	115, 315, 858, 1547, 2077
Van91I	CCANNNNNTGG	2 cut(s)	2397, 2884
Vha464I	CTTAAG	1 cut(s)	2093
VpaK11BI	GGWCC	3 cut(s)	832, 883, 916
VspI	ATTAAT	1 cut(s)	1890
XagI	CCTNNNNNAGG	1 cut(s)	840
XbaI	TCTAGA	1 cut(s)	2011
XceI	RCATGY	3 cut(s)	397, 1329, 1640
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1624
XmiI	GTMKAC	3 cut(s)	1288, 1975, 2904
XmnI	GAANNNNTTC	3 cut(s)	1310, 1731, 1781
XspI	CTAG	5 cut(s)	984, 1160, 2012, 2418, 2541
Zsp2I	ATGCAT	3 cut(s)	293, 1461, 1638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.