Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0011662

Physical Location & Seq

Genomic Coordinates Reverse (-)

16820611 .. 16821438

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G158500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGTGAAGAAGACTAGGGGTCGCCAAAAGGTTGATATGGTGAAAATGGAGAATGACAGCCATCTCCAAGTCACCTTCTCTAAGAGAAGGTCAGGCCTTTTCAAAAAGGCCAGCGAGCTCTGCACTCTGTGTGGTGCAGAGATCGCAATCATTGTCTTCTCACCAGGCAAGAAGGTATTTTGCTTTGGCCACCCGGGCATTGAGACATTGTTGGACAGGTTCGAGGGCACAGTCCCGCGTCAGATCTTGAATTCCGAAACGCAGAAGCTTATTGACGGGTACCGGATTGCAGGCCTGTGTGAGATCACTGATGAGCTCACACGGGTGCTAGAGGTCCTCGAGGAAGAAAGAAAATGGGGGGATGTGCTGACCCAGTCCATGAAGGCCAACAAAGAGGGGAAGTGGTGGCAGGGACCAGTGGAGGAGATGGAATTGGATCAGCTGGAGGCTTTGAAGGCTTCTCTTCTGGAGTTGAAGTCCAAAGTGGCTGATGAAGCTAAATTGAGACTTTCTGCTGCCGAAAGTGCAAACCTTGAACACAACCCTAATTTTTTTGTGGGGAGCTCCTCTTCTAGTGCTGCTGCCCAAAATGCAAACCCTGCTCACAATAATTTTTTTGTGGGGAGCTCTTCTTCCCTTGCTGCTGCTGGGCCCTCTGGCCTCCAAGGTTTGGTTAATCCTGATTTTAACAATGTTGGGTTTAATTTTAATGGAATTGATCATGTGATGCAGGCTCCTCATCAGCCTAACAATGTTGGGTTCAATGGCAATCCTAATGCCATGCCTCTCAGTGGATGGAACCCTAACCTCGGTGGAGGCTTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

276

Amino Acids

29.99

Weight (kDa)

6.1

Isoelectric Point (pI)

34.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36590 AT5G60440
fragaria_vesca	FvH4_2g03030
malus_domestica	MD05G1107900.v1.1 MD05G1114100.v1.1 MD10G1112300.v1.1
prunus_persica	Prupe.8G151900_v2.0.a1 Prupe.8G158400_v2.0.a1 Prupe.8G158500_v2.0.a1
pyrus_communis	pycom05g10880
rosa_chinensis	RchiOBHm_Chr6g0247821
rosa_laevigata	RLG00000015176
rosa_multiflora	Rmu_sc0001048.1_g000003
rosa_roxburghii	Rroxscaffold_180G00433220 Rroxscaffold_7G00213620
rosa_rugosa	Rorug05G0529300
rosa_samantha	Rh6AG044000 Rh6BG038700 Rh6CG037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	338
Acc65I	GGTACC	1 cut(s)	279
AccB1I	GGYRCC	1 cut(s)	279
AccB7I	CCANNNNNTGG	1 cut(s)	670
AccII	CGCG	1 cut(s)	238
AciI	CCGC	1 cut(s)	236
AclWI	GGATC	1 cut(s)	444
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	1 cut(s)	250
AdeI	CACNNNGTG	1 cut(s)	129
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	3 cut(s)	670, 791, 809
AgsI	TTSAA	6 cut(s)	103, 250, 454, 475, 536, 763
AhdI	GACNNNNNGTC	1 cut(s)	18
AjnI	CCWGG	1 cut(s)	163
AleI	CACNNNNGTG	1 cut(s)	323
AluBI	AGCT	7 cut(s)	118, 268, 316, 442, 497, 564, 627
AluI	AGCT	7 cut(s)	118, 268, 316, 442, 497, 564, 627
Alw21I	GWGCWC	4 cut(s)	120, 318, 566, 629
Alw26I	GTCTC	2 cut(s)	197, 499
AlwI	GGATC	1 cut(s)	444
Ama87I	CYCGRG	2 cut(s)	193, 338
AoxI	GGCC	7 cut(s)	94, 108, 187, 292, 384, 650, 658
ApaI	GGGCCC	1 cut(s)	654
ApeKI	GCWGC	5 cut(s)	515, 578, 581, 641, 644
ApoI	RAATTY	1 cut(s)	250
Asp718I	GGTACC	1 cut(s)	279
AspS9I	GGNCC	4 cut(s)	334, 413, 650, 651
AsuC2I	CCSGG	2 cut(s)	194, 195
AsuHPI	GGTGA	4 cut(s)	16, 52, 64, 153
AvaI	CYCGRG	2 cut(s)	193, 338
AvaII	GGWCC	2 cut(s)	334, 413
BaeGI	GKGCMC	2 cut(s)	230, 654
BalI	TGGCCA	1 cut(s)	189
BanI	GGYRCC	1 cut(s)	279
BanII	GRGCYC	5 cut(s)	120, 318, 566, 629, 654
BbsI	GAAGAC	2 cut(s)	17, 148
Bbv12I	GWGCWC	4 cut(s)	120, 318, 566, 629
BbvI	GCAGC	5 cut(s)	502, 565, 568, 628, 631
BccI	CCATC	3 cut(s)	69, 421, 789
BciT130I	CCWGG	1 cut(s)	165
BclI	TGATCA	1 cut(s)	718
BcnI	CCSGG	2 cut(s)	194, 195
BcoDI	GTCTC	2 cut(s)	197, 499
BfaI	CTAG	3 cut(s)	15, 329, 573
BglI	GCCNNNNNGGC	1 cut(s)	195
BglII	AGATCT	1 cut(s)	243
BisI	GCNGC	5 cut(s)	516, 579, 582, 642, 645
BlsI	GCNGC	5 cut(s)	517, 580, 583, 643, 646
Bme1390I	CCNGG	3 cut(s)	165, 194, 195
Bme18I	GGWCC	2 cut(s)	334, 413
BmeRI	GACNNNNNGTC	1 cut(s)	18
BmeT110I	CYCGRG	2 cut(s)	193, 338
BmgT120I	GGNCC	4 cut(s)	334, 413, 650, 651
BmiI	GGNNCC	5 cut(s)	281, 414, 652, 735, 800
BmrFI	CCNGG	3 cut(s)	165, 194, 195
BmrI	ACTGGG	1 cut(s)	367
BmsI	GCATC	1 cut(s)	717
BmuI	ACTGGG	1 cut(s)	367
BpiI	GAAGAC	2 cut(s)	17, 148
BplI	GAGNNNNNCTC	1 cut(s)	807
BpmI	CTGGAG	2 cut(s)	464, 488
BpuMI	CCSGG	2 cut(s)	194, 195
BsaBI	GATNNNNATC	1 cut(s)	146
BsaJI	CCNNGG	3 cut(s)	193, 664, 808
BsaWI	WCCGGW	1 cut(s)	282
BsaXI	ACNNNNNCTCC	2 cut(s)	461, 491
Bsc4I	CCNNNNNNNGG	3 cut(s)	670, 791, 809
Bse1I	ACTGG	2 cut(s)	373, 416
Bse8I	GATNNNNATC	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	165
BseDI	CCNNGG	3 cut(s)	193, 664, 808
BseGI	GGATG	2 cut(s)	367, 800
BseJI	GATNNNNATC	1 cut(s)	146
BseLI	CCNNNNNNNGG	3 cut(s)	670, 791, 809
BseMII	CTCAG	1 cut(s)	802
BseNI	ACTGG	2 cut(s)	373, 416
BseRI	GAGGAG	3 cut(s)	437, 556, 726
BseSI	GKGCMC	2 cut(s)	230, 654
BseXI	GCAGC	5 cut(s)	502, 565, 568, 628, 631
BseYI	CCCAGC	1 cut(s)	647
BsgI	GTGCAG	2 cut(s)	106, 156
Bsh1236I	CGCG	1 cut(s)	238
BshFI	GGCC	7 cut(s)	96, 110, 189, 294, 386, 652, 660
BshNI	GGYRCC	1 cut(s)	279
BsiHKAI	GWGCWC	4 cut(s)	120, 318, 566, 629
BsiHKCI	CYCGRG	2 cut(s)	193, 338
BsiSI	CCGG	2 cut(s)	194, 283
BslFI	GGGAC	2 cut(s)	218, 426
BslI	CCNNNNNNNGG	3 cut(s)	670, 791, 809
BsmAI	GTCTC	2 cut(s)	197, 499
BsmFI	GGGAC	2 cut(s)	218, 426
BsnI	GGCC	7 cut(s)	96, 110, 189, 294, 386, 652, 660
BsoBI	CYCGRG	2 cut(s)	193, 338
Bsp120I	GGGCCC	1 cut(s)	650
Bsp1286I	GDGCHC	6 cut(s)	120, 230, 318, 566, 629, 654
Bsp143I	GATC	5 cut(s)	141, 243, 303, 436, 718
BspACI	CCGC	1 cut(s)	236
BspANI	GGCC	7 cut(s)	96, 110, 189, 294, 386, 652, 660
BspCNI	CTCAG	1 cut(s)	801
BspFNI	CGCG	1 cut(s)	238
BspLI	GGNNCC	5 cut(s)	281, 414, 652, 735, 800
BspPI	GGATC	1 cut(s)	444
BspQI	GCTCTTC	1 cut(s)	634
BspT107I	GGYRCC	1 cut(s)	279
BsrI	ACTGG	2 cut(s)	373, 416
BssECI	CCNNGG	3 cut(s)	193, 664, 808
BssMI	GATC	5 cut(s)	141, 243, 303, 436, 718
BssT1I	CCWWGG	1 cut(s)	664
Bst2UI	CCWGG	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	232
Bst6I	CTCTTC	3 cut(s)	468, 574, 634
BstAPI	GCANNNNNTGC	1 cut(s)	599
BstC8I	GCNNGC	4 cut(s)	112, 116, 292, 732
BstDEI	CTNAG	2 cut(s)	81, 788
BstF5I	GGATG	2 cut(s)	367, 800
BstFNI	CGCG	1 cut(s)	238
BstKTI	GATC	5 cut(s)	144, 246, 306, 439, 721
BstMAI	GTCTC	2 cut(s)	197, 499
BstMBI	GATC	5 cut(s)	141, 243, 303, 436, 718
BstMWI	GCNNNNNNNGC	8 cut(s)	120, 143, 195, 455, 494, 524, 590, 599
BstNI	CCWGG	1 cut(s)	165
BstSCI	CCNGG	3 cut(s)	163, 192, 193
BstSLI	GKGCMC	2 cut(s)	230, 654
BstUI	CGCG	1 cut(s)	238
BstV1I	GCAGC	5 cut(s)	502, 565, 568, 628, 631
BstV2I	GAAGAC	2 cut(s)	17, 148
BstX2I	RGATCY	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	243
BsuRI	GGCC	7 cut(s)	96, 110, 189, 294, 386, 652, 660
BtsCI	GGATG	2 cut(s)	367, 800
BtsIMutI	CAGTG	3 cut(s)	306, 423, 796
Cac8I	GCNNGC	4 cut(s)	112, 116, 292, 732
Cfr13I	GGNCC	4 cut(s)	334, 413, 650, 651
Cfr9I	CCCGGG	1 cut(s)	193
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	3 cut(s)	379, 722, 781
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	2 cut(s)	81, 788
DpnI	GATC	5 cut(s)	143, 245, 305, 438, 720
DpnII	GATC	5 cut(s)	141, 243, 303, 436, 718
DraIII	CACNNNGTG	1 cut(s)	129
DriI	GACNNNNNGTC	1 cut(s)	18
EaeI	YGGCCR	1 cut(s)	187
Eam1104I	CTCTTC	3 cut(s)	468, 574, 634
Eam1105I	GACNNNNNGTC	1 cut(s)	18
EarI	CTCTTC	3 cut(s)	468, 574, 634
Ecl136II	GAGCTC	4 cut(s)	118, 316, 564, 627
Eco130I	CCWWGG	1 cut(s)	664
Eco147I	AGGCCT	2 cut(s)	96, 294
Eco24I	GRGCYC	5 cut(s)	120, 318, 566, 629, 654
Eco47I	GGWCC	2 cut(s)	334, 413
Eco53kI	GAGCTC	4 cut(s)	118, 316, 564, 627
Eco88I	CYCGRG	2 cut(s)	193, 338
EcoICRI	GAGCTC	4 cut(s)	118, 316, 564, 627
EcoO109I	RGGNCCY	2 cut(s)	334, 651
EcoRI	GAATTC	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	664
EcoT38I	GRGCYC	5 cut(s)	120, 318, 566, 629, 654
ErhI	CCWWGG	1 cut(s)	664
FaeI	CATG	3 cut(s)	382, 725, 784
FaiI	YATR	4 cut(s)	38, 380, 723, 782
FaqI	GGGAC	2 cut(s)	218, 426
FatI	CATG	3 cut(s)	378, 721, 780
FauI	CCCGC	1 cut(s)	243
FbaI	TGATCA	1 cut(s)	718
Fnu4HI	GCNGC	5 cut(s)	516, 579, 582, 642, 645
FokI	GGATG	2 cut(s)	374, 807
FriOI	GRGCYC	5 cut(s)	120, 318, 566, 629, 654
Fsp4HI	GCNGC	5 cut(s)	516, 579, 582, 642, 645
FspBI	CTAG	3 cut(s)	15, 329, 573
GluI	GCNGC	5 cut(s)	516, 579, 582, 642, 645
GsaI	CCCAGC	1 cut(s)	651
GsuI	CTGGAG	2 cut(s)	464, 488
HaeIII	GGCC	7 cut(s)	96, 110, 189, 294, 386, 652, 660
HapII	CCGG	2 cut(s)	194, 283
HgaI	GACGC	1 cut(s)	227
Hin1II	CATG	3 cut(s)	382, 725, 784
HindIII	AAGCTT	1 cut(s)	266
HpaII	CCGG	2 cut(s)	194, 283
HphI	GGTGA	4 cut(s)	16, 52, 64, 153
Hpy188I	TCNGA	3 cut(s)	243, 256, 827
Hpy188III	TCNNGA	3 cut(s)	247, 467, 680
HpyAV	CCTTC	5 cut(s)	81, 85, 166, 376, 448
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4V	TGCA	6 cut(s)	123, 137, 290, 527, 593, 730
HpyF10VI	GCNNNNNNNGC	8 cut(s)	120, 143, 195, 455, 494, 524, 590, 599
HpyF3I	CTNAG	2 cut(s)	81, 788
Hsp92II	CATG	3 cut(s)	382, 725, 784
KpnI	GGTACC	1 cut(s)	283
Ksp22I	TGATCA	1 cut(s)	718
Kzo9I	GATC	5 cut(s)	141, 243, 303, 436, 718
LguI	GCTCTTC	1 cut(s)	634
LmnI	GCTCC	4 cut(s)	561, 569, 624, 739
Lsp1109I	GCAGC	5 cut(s)	502, 565, 568, 628, 631
LweI	GCATC	1 cut(s)	717
MaeI	CTAG	3 cut(s)	15, 329, 573
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	5 cut(s)	143, 245, 305, 438, 720
MboI	GATC	5 cut(s)	141, 243, 303, 436, 718
MboII	GAAGA	8 cut(s)	19, 22, 148, 356, 455, 561, 621, 624
MflI	RGATCY	1 cut(s)	243
MhlI	GDGCHC	6 cut(s)	120, 230, 318, 566, 629, 654
MlsI	TGGCCA	1 cut(s)	189
MluCI	AATT	7 cut(s)	250, 431, 500, 547, 610, 703, 714
MluNI	TGGCCA	1 cut(s)	189
MmeI	TCCRAC	1 cut(s)	192
Mox20I	TGGCCA	1 cut(s)	189
MscI	TGGCCA	1 cut(s)	189
MseI	TTAA	4 cut(s)	675, 687, 702, 708
MslI	CAYNNNNRTG	1 cut(s)	323
Msp20I	TGGCCA	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	442
MspI	CCGG	2 cut(s)	194, 283
MspR9I	CCNGG	3 cut(s)	165, 194, 195
MvaI	CCWGG	1 cut(s)	165
MvnI	CGCG	1 cut(s)	238
MwoI	GCNNNNNNNGC	8 cut(s)	120, 143, 195, 455, 494, 524, 590, 599
NciI	CCSGG	2 cut(s)	194, 195
NdeII	GATC	5 cut(s)	141, 243, 303, 436, 718
NlaIII	CATG	3 cut(s)	382, 725, 784
NlaIV	GGNNCC	5 cut(s)	281, 414, 652, 735, 800
NmuCI	GTSAC	1 cut(s)	70
OliI	CACNNNNGTG	1 cut(s)	323
PaeR7I	CTCGAG	1 cut(s)	338
PceI	AGGCCT	2 cut(s)	96, 294
PciSI	GCTCTTC	1 cut(s)	634
PflFI	GACNNNGTC	1 cut(s)	373
PflMI	CCANNNNNTGG	1 cut(s)	670
PkrI	GCNGC	5 cut(s)	517, 580, 583, 643, 646
PpuMI	RGGWCCY	1 cut(s)	334
Psp124BI	GAGCTC	4 cut(s)	120, 318, 566, 629
Psp5II	RGGWCCY	1 cut(s)	334
Psp6I	CCWGG	1 cut(s)	163
PspFI	CCCAGC	1 cut(s)	647
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	5 cut(s)	281, 414, 652, 735, 800
PspOMI	GGGCCC	1 cut(s)	650
PspPI	GGNCC	4 cut(s)	334, 413, 650, 651
PspPPI	RGGWCCY	1 cut(s)	334
PspXI	VCTCGAGB	1 cut(s)	338
PsuI	RGATCY	1 cut(s)	243
PsyI	GACNNNGTC	1 cut(s)	373
PvuII	CAGCTG	1 cut(s)	442
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	323
SacI	GAGCTC	4 cut(s)	120, 318, 566, 629
SapI	GCTCTTC	1 cut(s)	634
SaqAI	TTAA	4 cut(s)	675, 687, 702, 708
SatI	GCNGC	5 cut(s)	516, 579, 582, 642, 645
Sau3AI	GATC	5 cut(s)	141, 243, 303, 436, 718
Sau96I	GGNCC	4 cut(s)	334, 413, 650, 651
ScrFI	CCNGG	3 cut(s)	165, 194, 195
SduI	GDGCHC	6 cut(s)	120, 230, 318, 566, 629, 654
SfaNI	GCATC	1 cut(s)	717
Sfr274I	CTCGAG	1 cut(s)	338
SinI	GGWCC	2 cut(s)	334, 413
SlaI	CTCGAG	1 cut(s)	338
SmaI	CCCGGG	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	7 cut(s)	250, 431, 500, 547, 610, 703, 714
SseBI	AGGCCT	2 cut(s)	96, 294
SsiI	CCGC	1 cut(s)	236
SspMI	CTAG	3 cut(s)	15, 329, 573
SstI	GAGCTC	4 cut(s)	120, 318, 566, 629
StuI	AGGCCT	2 cut(s)	96, 294
StyD4I	CCNGG	3 cut(s)	163, 192, 193
StyI	CCWWGG	1 cut(s)	664
TaaI	ACNGT	1 cut(s)	232
TaqI	TCGA	2 cut(s)	222, 339
TasI	AATT	7 cut(s)	250, 431, 500, 547, 610, 703, 714
Tru1I	TTAA	4 cut(s)	675, 687, 702, 708
Tru9I	TTAA	4 cut(s)	675, 687, 702, 708
TscAI	CASTG	3 cut(s)	313, 423, 796
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	5 cut(s)	515, 578, 581, 641, 644
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	2 cut(s)	395, 507
TspMI	CCCGGG	1 cut(s)	193
TspRI	CASTG	3 cut(s)	313, 423, 796
Tth111I	GACNNNGTC	1 cut(s)	373
Van91I	CCANNNNNTGG	1 cut(s)	670
VpaK11BI	GGWCC	2 cut(s)	334, 413
XapI	RAATTY	1 cut(s)	250
XhoI	CTCGAG	1 cut(s)	338
XmaI	CCCGGG	1 cut(s)	193
XspI	CTAG	3 cut(s)	15, 329, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.