Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007647

Physical Location & Seq

Genomic Coordinates Reverse (-)

17276882 .. 17279428

Gene Structure 2547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G36640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGTTCAGAAGAAGGAATGCTCACCAACTCGACAATGATGATTCTCAACAAGATAACAAGGTTAGAGAATTGAAATCCGCGATAGGACCATTATCGGGACATAGTTTAGTTTTCTGCTCTGATGCTTCCTTGAGGAGATTTCTAGATGCTCGTAATTGGGATGTGGAAAAAGCCAAGAAAATGATCCAAGAGACTCTTAAATGGAGATCAACTTATAAACCTCAAGAGATCCGTTGGAATCAAGTAGCACATGAAGGTGAGACCGGAAAAGCTTCAAGAGCTAGTTTTCATGATCGACAAGGTAGAGTAGTGCTTATAATGAGACCAGCCATGCAGAACTCAACATCACAAGAAGGTAATATCAGGCATTTGGTGTATCTTCTTGAAAATGCAATCATAAATCTTCCCAAGGGACAAAAACAAATGTCTTGGCTCATTGATTTCACTGGTTGGTCTATGGCTGTTAATCCTCCTATGAAAACAACACGCGAAATCATTCACATTCTACAGAACTATTACCCTGAGAGACTCGGTATCGCCTTTCTCTACAATCCACCAAGACTCTTCCAAGCAGTCTACAGGGCTGCTAAGTACTTCTTGGACCCACGTACAGCTGAAAAGGTGAAATTTGTGTACCCAAAAGACAAAGCAAGTGATGAACTGATGACGACACATTTTGACGTTGAGAATCTCCCCAAGGAATTCGGAGGTGAAGCAACACTAGAGTATGATCATGAAGATTTCTCACGACAAATGTATGAAGACGATCTCAAAACCGCAAAATACTGGGGACTAGAGGGGAAGCACTATCCGAAAACAAACGGTTTCTCTCCATCCGATGTTGTTCCTGAGCCGGCGATAGAAATCGCATCAGCAGCTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

294

Amino Acids

34.05

Weight (kDa)

8.43

Isoelectric Point (pI)

48.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	97 - 237	2.6e-35	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	119 - 246	3.3e-08	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36640 AT4G36640 AT4G36640
fragaria_vesca	FvH4_1g13330 FvH4_1g13330 FvH4_1g13330
malus_domestica	MD02G1148100.v1.1 MD15G1262300.v1.1
prunus_persica	Prupe.7G154300_v2.0.a1 Prupe.7G154300_v2.0.a1
pyrus_communis	pycom02g11680 pycom15g22920
rosa_chinensis	RchiOBHm_Chr2g0101611
rosa_laevigata	RLG00000017094
rosa_multiflora	Rmu_sc0006153.1_g000004
rosa_roxburghii	Rroxscaffold_2G00141150
rosa_rugosa	Rorug02G0101100 Rorug02G0101200 Rorug02G0101300
rosa_samantha	Rh2AG148400 Rh2BG153800 Rh2CG154200 Rh2DG154000
rosa_wichuraiana	Rw2G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	216, 317
AccI	GTMKAC	1 cut(s)	576
AccII	CGCG	2 cut(s)	80, 489
AciI	CCGC	2 cut(s)	78, 777
AclWI	GGATC	2 cut(s)	178, 223
AcsI	RAATTY	2 cut(s)	626, 701
AfaI	GTAC	3 cut(s)	593, 610, 635
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	3 cut(s)	73, 276, 386
AluBI	AGCT	5 cut(s)	272, 281, 614, 878, 882
AluI	AGCT	5 cut(s)	272, 281, 614, 878, 882
Alw26I	GTCTC	4 cut(s)	185, 254, 316, 520
AlwI	GGATC	2 cut(s)	178, 223
ApeKI	GCWGC	2 cut(s)	584, 875
ApoI	RAATTY	2 cut(s)	626, 701
Asp700I	GAANNNNTTC	2 cut(s)	271, 495
AspS9I	GGNCC	2 cut(s)	86, 601
AsuHPI	GGTGA	4 cut(s)	14, 269, 634, 722
AsuNHI	GCTAGC	1 cut(s)	878
AvaII	GGWCC	2 cut(s)	86, 601
BbsI	GAAGAC	1 cut(s)	768
BbvI	GCAGC	1 cut(s)	571
BccI	CCATC	1 cut(s)	841
BclI	TGATCA	1 cut(s)	730
BcoDI	GTCTC	4 cut(s)	185, 254, 316, 520
BfaI	CTAG	5 cut(s)	143, 282, 722, 794, 879
BfmI	CTRYAG	2 cut(s)	506, 577
BisI	GCNGC	2 cut(s)	585, 876
BlsI	GCNGC	2 cut(s)	586, 877
BmcAI	AGTACT	1 cut(s)	593
Bme18I	GGWCC	2 cut(s)	86, 601
BmgT120I	GGNCC	2 cut(s)	86, 601
BmiI	GGNNCC	1 cut(s)	603
BmrI	ACTGGG	1 cut(s)	796
BmsI	GCATC	3 cut(s)	112, 136, 878
BmtI	GCTAGC	1 cut(s)	882
BmuI	ACTGGG	1 cut(s)	796
BpiI	GAAGAC	1 cut(s)	768
Bpu10I	CCTNAGC	1 cut(s)	849
BpuEI	CTTGAG	2 cut(s)	151, 207
BsaAI	YACGTR	1 cut(s)	608
BsaBI	GATNNNNATC	1 cut(s)	863
BsaI	GGTCTC	2 cut(s)	254, 316
BsaJI	CCNNGG	2 cut(s)	408, 696
BsaWI	WCCGGW	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse118I	RCCGGY	1 cut(s)	853
Bse1I	ACTGG	2 cut(s)	451, 791
Bse8I	GATNNNNATC	1 cut(s)	863
BseDI	CCNNGG	2 cut(s)	408, 696
BseGI	GGATG	2 cut(s)	166, 833
BseJI	GATNNNNATC	1 cut(s)	863
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMII	CTCAG	2 cut(s)	513, 840
BseNI	ACTGG	2 cut(s)	451, 791
BseRI	GAGGAG	1 cut(s)	148
BseXI	GCAGC	1 cut(s)	571
Bsh1236I	CGCG	2 cut(s)	80, 489
BsiSI	CCGG	2 cut(s)	264, 854
BslFI	GGGAC	3 cut(s)	111, 426, 804
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	4 cut(s)	185, 254, 316, 520
BsmFI	GGGAC	3 cut(s)	111, 426, 804
BsmI	GAATGC	1 cut(s)	22
Bso31I	GGTCTC	2 cut(s)	254, 316
Bsp143I	GATC	6 cut(s)	183, 206, 228, 292, 730, 766
BspACI	CCGC	2 cut(s)	78, 777
BspCNI	CTCAG	2 cut(s)	514, 841
BspFNI	CGCG	2 cut(s)	80, 489
BspHI	TCATGA	2 cut(s)	289, 733
BspLI	GGNNCC	1 cut(s)	603
BspOI	GCTAGC	1 cut(s)	882
BspPI	GGATC	2 cut(s)	178, 223
BspTNI	GGTCTC	2 cut(s)	254, 316
BsrFI	RCCGGY	1 cut(s)	853
BsrI	ACTGG	2 cut(s)	451, 791
BssAI	RCCGGY	1 cut(s)	853
BssECI	CCNNGG	2 cut(s)	408, 696
BssMI	GATC	6 cut(s)	183, 206, 228, 292, 730, 766
BssT1I	CCWWGG	2 cut(s)	408, 696
Bst4CI	ACNGT	1 cut(s)	824
Bst6I	CTCTTC	1 cut(s)	569
BstBAI	YACGTR	1 cut(s)	608
BstC8I	GCNNGC	2 cut(s)	855, 880
BstDEI	CTNAG	3 cut(s)	522, 588, 849
BstF5I	GGATG	2 cut(s)	166, 833
BstFNI	CGCG	2 cut(s)	80, 489
BstKTI	GATC	6 cut(s)	186, 209, 231, 295, 733, 769
BstMAI	GTCTC	4 cut(s)	185, 254, 316, 520
BstMBI	GATC	6 cut(s)	183, 206, 228, 292, 730, 766
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 875
BstSFI	CTRYAG	2 cut(s)	506, 577
BstUI	CGCG	2 cut(s)	80, 489
BstV1I	GCAGC	1 cut(s)	571
BstV2I	GAAGAC	1 cut(s)	768
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	166, 833
BtsIMutI	CAGTG	1 cut(s)	444
Cac8I	GCNNGC	2 cut(s)	855, 880
CciI	TCATGA	2 cut(s)	289, 733
Cfr10I	RCCGGY	1 cut(s)	853
Cfr13I	GGNCC	2 cut(s)	86, 601
Csp6I	GTAC	3 cut(s)	592, 609, 634
CviAII	CATG	4 cut(s)	251, 290, 331, 734
CviQI	GTAC	3 cut(s)	592, 609, 634
DdeI	CTNAG	3 cut(s)	522, 588, 849
DpnI	GATC	6 cut(s)	185, 208, 230, 294, 732, 768
DpnII	GATC	6 cut(s)	183, 206, 228, 292, 730, 766
Eam1104I	CTCTTC	1 cut(s)	569
EarI	CTCTTC	1 cut(s)	569
Eco130I	CCWWGG	2 cut(s)	408, 696
Eco31I	GGTCTC	2 cut(s)	254, 316
Eco47I	GGWCC	2 cut(s)	86, 601
EcoRI	GAATTC	1 cut(s)	701
EcoT14I	CCWWGG	2 cut(s)	408, 696
ErhI	CCWWGG	2 cut(s)	408, 696
FaeI	CATG	4 cut(s)	254, 293, 334, 737
FalI	AAGNNNNNCTT	4 cut(s)	180, 212, 581, 613
FaqI	GGGAC	3 cut(s)	111, 426, 804
FatI	CATG	4 cut(s)	250, 289, 330, 733
FbaI	TGATCA	1 cut(s)	730
FblI	GTMKAC	1 cut(s)	576
Fnu4HI	GCNGC	2 cut(s)	585, 876
FokI	GGATG	2 cut(s)	173, 820
Fsp4HI	GCNGC	2 cut(s)	585, 876
FspBI	CTAG	5 cut(s)	143, 282, 722, 794, 879
GluI	GCNGC	2 cut(s)	585, 876
HapII	CCGG	2 cut(s)	264, 854
Hin1II	CATG	4 cut(s)	254, 293, 334, 737
HindIII	AAGCTT	1 cut(s)	270
HinfI	GANTC	6 cut(s)	41, 193, 238, 528, 561, 688
HpaII	CCGG	2 cut(s)	264, 854
HphI	GGTGA	4 cut(s)	14, 269, 634, 722
Hpy166II	GTNNAC	2 cut(s)	577, 634
Hpy188I	TCNGA	5 cut(s)	8, 121, 707, 813, 838
Hpy188III	TCNNGA	9 cut(s)	96, 143, 224, 276, 290, 383, 734, 747, 848
Hpy8I	GTNNAC	2 cut(s)	577, 634
HpyAV	CCTTC	3 cut(s)	6, 248, 347
HpyCH4III	ACNGT	1 cut(s)	824
HpyCH4IV	ACGT	2 cut(s)	607, 681
HpyCH4V	TGCA	2 cut(s)	334, 392
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 875
HpyF3I	CTNAG	3 cut(s)	522, 588, 849
HpySE526I	ACGT	2 cut(s)	607, 681
Hsp92II	CATG	4 cut(s)	254, 293, 334, 737
KroI	GCCGGC	1 cut(s)	853
KroNI	GCCGGC	1 cut(s)	855
Ksp22I	TGATCA	1 cut(s)	730
Kzo9I	GATC	6 cut(s)	183, 206, 228, 292, 730, 766
LpnPI	CCDG	9 cut(s)	277, 339, 349, 432, 534, 565, 772, 861, 867
Lsp1109I	GCAGC	1 cut(s)	571
LweI	GCATC	3 cut(s)	112, 136, 878
MaeI	CTAG	5 cut(s)	143, 282, 722, 794, 879
MaeII	ACGT	2 cut(s)	607, 681
MalI	GATC	6 cut(s)	185, 208, 230, 294, 732, 768
MboI	GATC	6 cut(s)	183, 206, 228, 292, 730, 766
MboII	GAAGA	6 cut(s)	21, 371, 395, 556, 749, 773
MflI	RGATCY	1 cut(s)	228
MluCI	AATT	4 cut(s)	68, 154, 626, 701
MlyI	GAGTC	3 cut(s)	187, 522, 555
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	5 cut(s)	126, 231, 480, 701, 790
MroNI	GCCGGC	1 cut(s)	853
MroXI	GAANNNNTTC	2 cut(s)	271, 495
MseI	TTAA	2 cut(s)	198, 465
MslI	CAYNNNNRTG	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	614
MspI	CCGG	2 cut(s)	264, 854
Mva1269I	GAATGC	1 cut(s)	22
MvnI	CGCG	2 cut(s)	80, 489
MwoI	GCNNNNNNNGC	2 cut(s)	278, 875
NaeI	GCCGGC	1 cut(s)	855
NdeII	GATC	6 cut(s)	183, 206, 228, 292, 730, 766
NgoMIV	GCCGGC	1 cut(s)	853
NheI	GCTAGC	1 cut(s)	878
NlaIII	CATG	4 cut(s)	254, 293, 334, 737
NlaIV	GGNNCC	1 cut(s)	603
PagI	TCATGA	2 cut(s)	289, 733
PctI	GAATGC	1 cut(s)	22
PdiI	GCCGGC	1 cut(s)	855
PdmI	GAANNNNTTC	2 cut(s)	271, 495
PfeI	GAWTC	3 cut(s)	41, 238, 688
PkrI	GCNGC	2 cut(s)	586, 877
PleI	GAGTC	3 cut(s)	187, 522, 555
PpsI	GAGTC	3 cut(s)	187, 522, 555
Ppu21I	YACGTR	1 cut(s)	608
PsiI	TTATAA	2 cut(s)	216, 317
PspN4I	GGNNCC	1 cut(s)	603
PspPI	GGNCC	2 cut(s)	86, 601
PsuI	RGATCY	1 cut(s)	228
PvuII	CAGCTG	1 cut(s)	614
RsaI	GTAC	3 cut(s)	593, 610, 635
RsaNI	GTAC	3 cut(s)	592, 609, 634
RseI	CAYNNNNRTG	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	198, 465
SatI	GCNGC	2 cut(s)	585, 876
Sau3AI	GATC	6 cut(s)	183, 206, 228, 292, 730, 766
Sau96I	GGNCC	2 cut(s)	86, 601
ScaI	AGTACT	1 cut(s)	593
SchI	GAGTC	3 cut(s)	187, 522, 555
SfaNI	GCATC	3 cut(s)	112, 136, 878
SfcI	CTRYAG	2 cut(s)	506, 577
SinI	GGWCC	2 cut(s)	86, 601
SmiMI	CAYNNNNRTG	1 cut(s)	255
SmlI	CTYRAG	2 cut(s)	130, 222
SmoI	CTYRAG	2 cut(s)	130, 222
Sse9I	AATT	4 cut(s)	68, 154, 626, 701
SsiI	CCGC	2 cut(s)	78, 777
SspMI	CTAG	5 cut(s)	143, 282, 722, 794, 879
StyI	CCWWGG	2 cut(s)	408, 696
TaaI	ACNGT	1 cut(s)	824
TaiI	ACGT	2 cut(s)	610, 684
TaqI	TCGA	2 cut(s)	30, 295
TasI	AATT	4 cut(s)	68, 154, 626, 701
TatI	WGTACW	1 cut(s)	591
TfiI	GAWTC	3 cut(s)	41, 238, 688
Tru1I	TTAA	2 cut(s)	198, 465
Tru9I	TTAA	2 cut(s)	198, 465
TscAI	CASTG	1 cut(s)	451
TseI	GCWGC	2 cut(s)	584, 875
TspDTI	ATGAA	6 cut(s)	267, 278, 491, 672, 750, 774
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	1 cut(s)	451
VpaK11BI	GGWCC	2 cut(s)	86, 601
XapI	RAATTY	2 cut(s)	626, 701
XbaI	TCTAGA	1 cut(s)	142
XmiI	GTMKAC	1 cut(s)	576
XmnI	GAANNNNTTC	2 cut(s)	271, 495
XspI	CTAG	5 cut(s)	143, 282, 722, 794, 879
ZrmI	AGTACT	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.