Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007647

Physical Location & Seq

Genomic Coordinates Reverse (-)

22402487 .. 22405674

Gene Structure 3188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1262300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTATCTTTTGAGAAGACAATCTCAAAAACCAACCCCTGAGGATGATTCTGCACAAAAAGATGCCAAGGTCAAAGAACTCAGGGCTGCACTTGGCCCCCTATCTGGACGTAATTTGAAGTACTGCACTGATGCATGCCTTCGGAGATATTTGGAAGCTCGGAGCTGGAACCTTGATAAGGCGAAGAAAATGCTTGAAGAGACACTGAGGTGGAGGGCAACTTATAAGCCGGAAGAAACCCGTTGGCATGAAATAGCGCATGAAGGTGAGACTGGCAAAGTATCTAGAGCTACTTTCCATGATCGACTTGGGAGAAGCGTGCTTATAATGAGGCCAGCAAAGCAGAACACAAACTCGCCCGAAGATAATATCCGCCATTTAGTCTATCTTATAGAAAATGGTATCCTCAACCTTCCTGAAGGTCAAGAACAAATGTCGTGGTTGGTTGACTTCACTGGATTCTCAATCAACACCAATGTCACCGTCAAGACAGCCCGGGATATTATTAACATTCTACAGAACCATTACCCCGAGAGGCTTGCGGTTGCATTCCTGTATAACCCGCCAAGAATTTTTCAGGCATTCTGGAAGGCTGTCAAGTACTTCCTGGATCCCAAGACCTTTCAGAAGGTGAAGTTTGTATACCCTAAAGGTAAAGAAAGTGTGGAGCTCATGAAGACATTCTTTGATGTTGAAAATCTTCCGAGCGAGCTTGGGGGACAAGCCACCCTCAAGTATGACCATGAGGAGTTTTCACGAATGATGGCGGAGGATGATGTGAAAACTGCCAAGTTCTGGGGATTTGACGAGAAGCCTTGCCATATAACAAATGGGCATTCTGGAGCAGAGGTGGCACCGGAGCCTCTCCCCGTCGCACCTGCGGCTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

297

Amino Acids

34.11

Weight (kDa)

8.57

Isoelectric Point (pI)

62.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_N	PF03765	42 - 67	1.7e-06	CRAL/TRIO, N-terminal domain
CRAL_TRIO	PF00650	100 - 240	3e-35	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	104 - 249	4.4e-11	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36640 AT4G36640 AT4G36640
fragaria_vesca	FvH4_1g13330 FvH4_1g13330 FvH4_1g13330
malus_domestica	MD02G1148100.v1.1 MD15G1262300.v1.1
prunus_persica	Prupe.7G154300_v2.0.a1 Prupe.7G154300_v2.0.a1
pyrus_communis	pycom02g11680 pycom15g22920
rosa_chinensis	RchiOBHm_Chr2g0101611
rosa_laevigata	RLG00000017094
rosa_multiflora	Rmu_sc0006153.1_g000004
rosa_roxburghii	Rroxscaffold_2G00141150
rosa_rugosa	Rorug02G0101100 Rorug02G0101200 Rorug02G0101300
rosa_samantha	Rh2AG148400 Rh2BG153800 Rh2CG154200 Rh2DG154000
rosa_wichuraiana	Rw2G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	225, 326
AarI	CACCTGC	1 cut(s)	886
Acc36I	ACCTGC	1 cut(s)	886
AccB1I	GGYRCC	1 cut(s)	853
AccB7I	CCANNNNNTGG	1 cut(s)	795
AccI	GTMKAC	1 cut(s)	642
AciI	CCGC	5 cut(s)	373, 542, 563, 767, 881
AclWI	GGATC	2 cut(s)	605, 618
AcsI	RAATTY	1 cut(s)	570
AcuI	CTGAAG	1 cut(s)	438
AfaI	GTAC	2 cut(s)	122, 602
AfiI	CCNNNNNNNGG	3 cut(s)	104, 178, 795
AgsI	TTSAA	3 cut(s)	118, 197, 695
AjnI	CCWGG	1 cut(s)	606
AleI	CACNNNNGTG	1 cut(s)	208
AluBI	AGCT	6 cut(s)	158, 165, 290, 670, 712, 888
AluI	AGCT	6 cut(s)	158, 165, 290, 670, 712, 888
Alw21I	GWGCWC	1 cut(s)	672
Alw26I	GTCTC	2 cut(s)	194, 263
AlwI	GGATC	2 cut(s)	605, 618
Ama87I	CYCGRG	2 cut(s)	495, 530
AoxI	GGCC	2 cut(s)	94, 332
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	1 cut(s)	570
Asp700I	GAANNNNTTC	2 cut(s)	680, 699
AspLEI	GCGC	1 cut(s)	259
AspS9I	GGNCC	1 cut(s)	95
AsuC2I	CCSGG	2 cut(s)	496, 497
AsuHPI	GGTGA	3 cut(s)	278, 472, 643
AsuNHI	GCTAGC	1 cut(s)	884
AvaI	CYCGRG	2 cut(s)	495, 530
AxyI	CCTNAGG	1 cut(s)	39
BamHI	GGATCC	1 cut(s)	610
BanI	GGYRCC	1 cut(s)	853
BanII	GRGCYC	1 cut(s)	672
BarI	GAAGNNNNNNTAC	2 cut(s)	626, 658
BbsI	GAAGAC	2 cut(s)	22, 683
Bbv12I	GWGCWC	1 cut(s)	672
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	1 cut(s)	757
BcgI	CGANNNNNNTGC	4 cut(s)	172, 206, 521, 555
BciT130I	CCWGG	1 cut(s)	608
BciVI	GTATCC	1 cut(s)	413
BcnI	CCSGG	2 cut(s)	496, 497
BcoDI	GTCTC	2 cut(s)	194, 263
BfaI	CTAG	2 cut(s)	285, 885
BfmI	CTRYAG	1 cut(s)	515
BfuAI	ACCTGC	1 cut(s)	886
BfuI	GTATCC	1 cut(s)	413
BisI	GCNGC	2 cut(s)	87, 882
BlsI	GCNGC	2 cut(s)	88, 883
BmcAI	AGTACT	2 cut(s)	122, 602
Bme1390I	CCNGG	3 cut(s)	496, 497, 608
BmeT110I	CYCGRG	2 cut(s)	495, 530
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	5 cut(s)	97, 170, 612, 855, 861
BmrFI	CCNGG	3 cut(s)	496, 497, 608
BmsI	GCATC	2 cut(s)	52, 121
BmtI	GCTAGC	1 cut(s)	888
BpiI	GAAGAC	2 cut(s)	22, 683
BpmI	CTGGAG	1 cut(s)	861
BpuEI	CTTGAG	1 cut(s)	716
BpuMI	CCSGG	2 cut(s)	496, 497
BsaJI	CCNNGG	2 cut(s)	66, 495
BsaWI	WCCGGW	1 cut(s)	856
BsaXI	ACNNNNNCTCC	2 cut(s)	834, 864
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 178, 795
Bse1I	ACTGG	2 cut(s)	277, 460
Bse21I	CCTNAGG	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	608
BseDI	CCNNGG	2 cut(s)	66, 495
BseGI	GGATG	2 cut(s)	49, 778
BseLI	CCNNNNNNNGG	3 cut(s)	104, 178, 795
BseMII	CTCAG	3 cut(s)	30, 94, 197
BseNI	ACTGG	2 cut(s)	277, 460
BseRI	GAGGAG	1 cut(s)	761
BseXI	GCAGC	1 cut(s)	73
BsgI	GTGCAG	3 cut(s)	36, 72, 109
BshFI	GGCC	2 cut(s)	96, 334
BshNI	GGYRCC	1 cut(s)	853
BsiHKAI	GWGCWC	1 cut(s)	672
BsiHKCI	CYCGRG	2 cut(s)	495, 530
BsiSI	CCGG	3 cut(s)	230, 496, 857
BslFI	GGGAC	1 cut(s)	732
BslI	CCNNNNNNNGG	3 cut(s)	104, 178, 795
BsmAI	GTCTC	2 cut(s)	194, 263
BsmFI	GGGAC	1 cut(s)	732
BsmI	GAATGC	3 cut(s)	548, 581, 835
BsnI	GGCC	2 cut(s)	96, 334
BsoBI	CYCGRG	2 cut(s)	495, 530
Bsp1286I	GDGCHC	1 cut(s)	672
Bsp143I	GATC	2 cut(s)	301, 610
BspACI	CCGC	5 cut(s)	373, 542, 563, 767, 881
BspANI	GGCC	2 cut(s)	96, 334
BspCNI	CTCAG	3 cut(s)	31, 93, 198
BspHI	TCATGA	1 cut(s)	672
BspLI	GGNNCC	5 cut(s)	97, 170, 612, 855, 861
BspMI	ACCTGC	1 cut(s)	886
BspOI	GCTAGC	1 cut(s)	888
BspPI	GGATC	2 cut(s)	605, 618
BspT107I	GGYRCC	1 cut(s)	853
BsrI	ACTGG	2 cut(s)	277, 460
BssECI	CCNNGG	2 cut(s)	66, 495
BssMI	GATC	2 cut(s)	301, 610
BssNAI	GTATAC	1 cut(s)	643
BssT1I	CCWWGG	1 cut(s)	66
Bst1107I	GTATAC	1 cut(s)	643
Bst2UI	CCWGG	1 cut(s)	608
Bst4CI	ACNGT	1 cut(s)	484
Bst6I	CTCTTC	1 cut(s)	192
BstC8I	GCNNGC	6 cut(s)	136, 320, 336, 540, 710, 886
BstDEI	CTNAG	3 cut(s)	39, 80, 206
BstENI	CCTNNNNNAGG	1 cut(s)	176
BstF5I	GGATG	2 cut(s)	49, 778
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	2 cut(s)	304, 613
BstMAI	GTCTC	2 cut(s)	194, 263
BstMBI	GATC	2 cut(s)	301, 610
BstMWI	GCNNNNNNNGC	3 cut(s)	340, 851, 881
BstNI	CCWGG	1 cut(s)	608
BstNSI	RCATGY	1 cut(s)	138
BstSCI	CCNGG	3 cut(s)	494, 495, 606
BstSFI	CTRYAG	1 cut(s)	515
BstV1I	GCAGC	1 cut(s)	73
BstV2I	GAAGAC	2 cut(s)	22, 683
BstX2I	RGATCY	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	610
BstZ17I	GTATAC	1 cut(s)	643
Bsu36I	CCTNAGG	1 cut(s)	39
BsuI	GTATCC	1 cut(s)	413
BsuRI	GGCC	2 cut(s)	96, 334
BtsCI	GGATG	2 cut(s)	49, 778
BtsIMutI	CAGTG	3 cut(s)	126, 203, 453
BveI	ACCTGC	1 cut(s)	886
Cac8I	GCNNGC	6 cut(s)	136, 320, 336, 540, 710, 886
CciI	TCATGA	1 cut(s)	672
CfoI	GCGC	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	95
Cfr9I	CCCGGG	1 cut(s)	495
Csp6I	GTAC	2 cut(s)	121, 601
CspCI	CAANNNNNGTGG	2 cut(s)	419, 454
CviAII	CATG	6 cut(s)	135, 248, 260, 299, 673, 743
CviQI	GTAC	2 cut(s)	121, 601
DdeI	CTNAG	3 cut(s)	39, 80, 206
DpnI	GATC	2 cut(s)	303, 612
DpnII	GATC	2 cut(s)	301, 610
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
EciI	GGCGGA	2 cut(s)	362, 782
Ecl136II	GAGCTC	1 cut(s)	670
Eco130I	CCWWGG	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	672
Eco53kI	GAGCTC	1 cut(s)	670
Eco57I	CTGAAG	1 cut(s)	438
Eco81I	CCTNAGG	1 cut(s)	39
Eco88I	CYCGRG	2 cut(s)	495, 530
EcoICRI	GAGCTC	1 cut(s)	670
EcoNI	CCTNNNNNAGG	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	606
EcoT14I	CCWWGG	1 cut(s)	66
EcoT22I	ATGCAT	1 cut(s)	136
EcoT38I	GRGCYC	1 cut(s)	672
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	6 cut(s)	138, 251, 263, 302, 676, 746
FalI	AAGNNNNNCTT	2 cut(s)	668, 700
FaqI	GGGAC	1 cut(s)	732
FatI	CATG	6 cut(s)	134, 247, 259, 298, 672, 742
FauI	CCCGC	1 cut(s)	570
FblI	GTMKAC	1 cut(s)	642
Fnu4HI	GCNGC	2 cut(s)	87, 882
FokI	GGATG	2 cut(s)	56, 785
FriOI	GRGCYC	1 cut(s)	672
Fsp4HI	GCNGC	2 cut(s)	87, 882
FspBI	CTAG	2 cut(s)	285, 885
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	2 cut(s)	87, 882
GsuI	CTGGAG	1 cut(s)	861
HaeIII	GGCC	2 cut(s)	96, 334
HapII	CCGG	3 cut(s)	230, 496, 857
HhaI	GCGC	1 cut(s)	259
Hin1II	CATG	6 cut(s)	138, 251, 263, 302, 676, 746
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HinfI	GANTC	2 cut(s)	47, 459
HpaII	CCGG	3 cut(s)	230, 496, 857
HphI	GGTGA	3 cut(s)	278, 472, 643
Hpy166II	GTNNAC	2 cut(s)	448, 643
Hpy188I	TCNGA	4 cut(s)	144, 162, 627, 705
Hpy188III	TCNNGA	9 cut(s)	105, 285, 416, 425, 487, 586, 673, 756, 840
Hpy8I	GTNNAC	2 cut(s)	448, 643
Hpy99I	CGWCG	1 cut(s)	875
HpyAV	CCTTC	6 cut(s)	149, 257, 413, 422, 583, 622
HpyCH4III	ACNGT	1 cut(s)	484
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	5 cut(s)	53, 89, 126, 134, 548
HpyF10VI	GCNNNNNNNGC	3 cut(s)	340, 851, 881
HpyF3I	CTNAG	3 cut(s)	39, 80, 206
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	6 cut(s)	138, 251, 263, 302, 676, 746
HspAI	GCGC	1 cut(s)	257
Kzo9I	GATC	2 cut(s)	301, 610
LmnI	GCTCC	4 cut(s)	162, 667, 842, 859
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	2 cut(s)	52, 121
MaeI	CTAG	2 cut(s)	285, 885
MaeII	ACGT	1 cut(s)	109
MaeIII	GTNAC	1 cut(s)	478
MalI	GATC	2 cut(s)	303, 612
MboI	GATC	2 cut(s)	301, 610
MboII	GAAGA	7 cut(s)	27, 196, 209, 245, 374, 688, 692
MflI	RGATCY	1 cut(s)	610
MhlI	GDGCHC	1 cut(s)	672
MluCI	AATT	2 cut(s)	112, 570
Mph1103I	ATGCAT	1 cut(s)	136
MroXI	GAANNNNTTC	2 cut(s)	680, 699
MseI	TTAA	1 cut(s)	507
MslI	CAYNNNNRTG	2 cut(s)	208, 264
MspI	CCGG	3 cut(s)	230, 496, 857
MspR9I	CCNGG	3 cut(s)	496, 497, 608
Mva1269I	GAATGC	3 cut(s)	548, 581, 835
MvaI	CCWGG	1 cut(s)	608
MwoI	GCNNNNNNNGC	3 cut(s)	340, 851, 881
NciI	CCSGG	2 cut(s)	496, 497
NdeII	GATC	2 cut(s)	301, 610
NheI	GCTAGC	1 cut(s)	884
NlaIII	CATG	6 cut(s)	138, 251, 263, 302, 676, 746
NlaIV	GGNNCC	5 cut(s)	97, 170, 612, 855, 861
NmuCI	GTSAC	1 cut(s)	478
NsiI	ATGCAT	1 cut(s)	136
NspI	RCATGY	1 cut(s)	138
OliI	CACNNNNGTG	1 cut(s)	208
PaeI	GCATGC	1 cut(s)	138
PagI	TCATGA	1 cut(s)	672
PaqCI	CACCTGC	1 cut(s)	886
PctI	GAATGC	3 cut(s)	548, 581, 835
PdmI	GAANNNNTTC	2 cut(s)	680, 699
PfeI	GAWTC	2 cut(s)	47, 459
PflMI	CCANNNNNTGG	1 cut(s)	795
PfoI	TCCNGGA	1 cut(s)	606
PkrI	GCNGC	2 cut(s)	88, 883
PsiI	TTATAA	2 cut(s)	225, 326
Psp124BI	GAGCTC	1 cut(s)	672
Psp6I	CCWGG	1 cut(s)	606
PspGI	CCWGG	1 cut(s)	606
PspN4I	GGNNCC	5 cut(s)	97, 170, 612, 855, 861
PspPI	GGNCC	1 cut(s)	95
PsuI	RGATCY	1 cut(s)	610
RsaI	GTAC	2 cut(s)	122, 602
RsaNI	GTAC	2 cut(s)	121, 601
RseI	CAYNNNNRTG	2 cut(s)	208, 264
SacI	GAGCTC	1 cut(s)	672
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	2 cut(s)	87, 882
Sau3AI	GATC	2 cut(s)	301, 610
Sau96I	GGNCC	1 cut(s)	95
ScaI	AGTACT	2 cut(s)	122, 602
ScrFI	CCNGG	3 cut(s)	496, 497, 608
SduI	GDGCHC	1 cut(s)	672
SfaNI	GCATC	2 cut(s)	52, 121
SfcI	CTRYAG	1 cut(s)	515
SmaI	CCCGGG	1 cut(s)	497
SmiMI	CAYNNNNRTG	2 cut(s)	208, 264
SmlI	CTYRAG	1 cut(s)	731
SmoI	CTYRAG	1 cut(s)	731
SphI	GCATGC	1 cut(s)	138
Sse9I	AATT	2 cut(s)	112, 570
SsiI	CCGC	5 cut(s)	373, 542, 563, 767, 881
SspMI	CTAG	2 cut(s)	285, 885
SstI	GAGCTC	1 cut(s)	672
StyD4I	CCNGG	3 cut(s)	494, 495, 606
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	484
TaiI	ACGT	1 cut(s)	112
TaqI	TCGA	1 cut(s)	304
TasI	AATT	2 cut(s)	112, 570
TatI	WGTACW	2 cut(s)	120, 600
TauI	GCSGC	1 cut(s)	884
TfiI	GAWTC	2 cut(s)	47, 459
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	3 cut(s)	133, 210, 460
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	3 cut(s)	264, 276, 689
TspMI	CCCGGG	1 cut(s)	495
TspRI	CASTG	3 cut(s)	133, 210, 460
Van91I	CCANNNNNTGG	1 cut(s)	795
XagI	CCTNNNNNAGG	1 cut(s)	176
XapI	RAATTY	1 cut(s)	570
XbaI	TCTAGA	1 cut(s)	284
XceI	RCATGY	1 cut(s)	138
XcmI	CCANNNNNNNNNTGG	2 cut(s)	305, 827
XmaI	CCCGGG	1 cut(s)	495
XmiI	GTMKAC	1 cut(s)	642
XmnI	GAANNNNTTC	2 cut(s)	680, 699
XspI	CTAG	2 cut(s)	285, 885
ZrmI	AGTACT	2 cut(s)	122, 602
Zsp2I	ATGCAT	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.