Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007647

Physical Location & Seq

Genomic Coordinates Forward (+)

8593871 .. 8596142

Gene Structure 2272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0101300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGACGAGATTCTTGATCATTTTTTCAGTTCCTCATCATGGACAGATGTGGATGTAAAGGAAAGATCATCTTTGGACTGTTACGAAAATCCACCAACAAACGAAATGTTTCTCAGTTCACTTGGAGTAATTGAAGATGACAGCAATAACTCTGCTACAAATCTGAGCAACTCAAACCACAGCATGGAGAGCATGGCTGCACAGTCTGCTAATTCATCTGTTGCTCATGATTTTGAGTCTGATGCACAAGACAATTGCAACAATTGCGCGGCCAACTTCTCGATTAATGATCAAATGGGCCTGCAATATGATTTGGATGGTAACATGGCGAGATCAACATCTGTTTCGTCCCTAGAGCCACAAAATGTGGGAGGCAATTGTTGTGAACAGTCTGTCTTTCAGAGACTCAATGGAGATATTGAAACCCTTTCTCCAATTTCTCAGCTGTGGCCTCTTCAAGCTTATGAGGGTGTCTCTTCTCCTCTTTGTCCTCCTGGTATGGGACAACAGAAGCTGTGCAGCTTTGGTAGTAATGATATTTATGAGTTATCTGATTTAATCACCACAGAGAAGGTAAGCCAGGAGATGGGAAATTATCCTTTGCCCTCTTTTGCTTCTGGGCCTCAGATTCCAATGGCAATGACTGGATTGCAGTCTTTCCCACAGACTACATCAACTAACCCCTCTGCTGAATGTACTGGACCTAGAAAGCCTCGTATGAGGGCTCGCCGAGGCCAGGCAACTGATCCACACAGTATTGCTGAACGGCTTCGGAGAGAGAAAATTGCTGATAGAATGAAGAATCTGCAAGAACTTGTACCAAAGTCTAACAAGACTGACAAGGCATCTATGCTTGATGAAATCATCGAGTATGTCAAGTTTCTTCAGCAACAACTCAAGGTTCTAAGCGCACGCAGATTGGGAGCTACAGGGGCAGTTATCTTGGATAATCAGGCTAAGGGGACCAATGGGATTTCACAGTCTCCATCACTTGGTCAAGTAGCTCATGACATTTCTTTCAATGAAATTGCTTTTGAACAAGTACTGAAACTGATGGAAACCGATGTAACCAAGGCAATGCATTATCTCCAAAGCAAAGGTCTCTGCATGATGCCCGTCGCTCTTGCCAATGCCATATTGGCCGAAAAGGAATCATCACCGGCTCCTGATTCTGCCGAGAATTTGAAGAACTCCGGTTTTACTGATGATGGTTTTGTTCACAACCCCAGCAGCAGCAGTAGCAGTAACAGCAACACCTTGCCTGGCACCGACAAAACGGCTGTCAATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

430

Amino Acids

46.66

Weight (kDa)

4.7

Isoelectric Point (pI)

55.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	251 - 296	3.5e-10	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	255 - 301	7.3e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36640 AT4G36640 AT4G36640
fragaria_vesca	FvH4_1g13330 FvH4_1g13330 FvH4_1g13330
malus_domestica	MD02G1148100.v1.1 MD15G1262300.v1.1
prunus_persica	Prupe.7G154300_v2.0.a1 Prupe.7G154300_v2.0.a1
pyrus_communis	pycom02g11680 pycom15g22920
rosa_chinensis	RchiOBHm_Chr2g0101611
rosa_laevigata	RLG00000017094
rosa_multiflora	Rmu_sc0006153.1_g000004
rosa_roxburghii	Rroxscaffold_2G00141150
rosa_rugosa	Rorug02G0101100 Rorug02G0101200 Rorug02G0101300
rosa_samantha	Rh2AG148400 Rh2BG153800 Rh2CG154200 Rh2DG154000
rosa_wichuraiana	Rw2G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1265
AccB7I	CCANNNNNTGG	3 cut(s)	184, 586, 992
AccII	CGCG	1 cut(s)	269
AciI	CCGC	1 cut(s)	269
AclWI	GGATC	1 cut(s)	740
AcoI	YGGCCR	2 cut(s)	270, 1140
AcsI	RAATTY	1 cut(s)	1180
AcuI	CTGAAG	1 cut(s)	869
AfaI	GTAC	3 cut(s)	697, 819, 1044
AfiI	CCNNNNNNNGG	6 cut(s)	39, 184, 500, 586, 736, 992
AgsI	TTSAA	6 cut(s)	134, 422, 458, 1021, 1037, 1186
AjnI	CCWGG	4 cut(s)	493, 579, 735, 1261
AluBI	AGCT	6 cut(s)	445, 461, 514, 522, 926, 1004
AluI	AGCT	6 cut(s)	445, 461, 514, 522, 926, 1004
Alw26I	GTCTC	4 cut(s)	397, 478, 987, 1106
AlwI	GGATC	1 cut(s)	740
AlwNI	CAGNNNCTG	1 cut(s)	514
AoxI	GGCC	6 cut(s)	270, 298, 449, 620, 733, 1140
ApeKI	GCWGC	4 cut(s)	197, 519, 1230, 1233
ApoI	RAATTY	1 cut(s)	1180
ArsI	GACNNNNNNTTYG	3 cut(s)	1084, 1116, 1266
AseI	ATTAAT	1 cut(s)	285
Asp700I	GAANNNNTTC	2 cut(s)	108, 768
AspLEI	GCGC	2 cut(s)	269, 911
AspS9I	GGNCC	4 cut(s)	298, 620, 701, 963
AsuHPI	GGTGA	2 cut(s)	553, 1149
AvaII	GGWCC	2 cut(s)	701, 963
BanI	GGYRCC	1 cut(s)	1265
BanII	GRGCYC	1 cut(s)	727
BbvI	GCAGC	4 cut(s)	184, 531, 1242, 1245
BccI	CCATC	5 cut(s)	311, 580, 994, 1048, 1202
BceAI	ACGGC	1 cut(s)	782
BciT130I	CCWGG	4 cut(s)	495, 581, 737, 1263
BclI	TGATCA	2 cut(s)	16, 289
BcoDI	GTCTC	4 cut(s)	397, 478, 987, 1106
BfaI	CTAG	2 cut(s)	353, 705
BfmI	CTRYAG	1 cut(s)	927
BglI	GCCNNNNNGGC	1 cut(s)	1139
BisI	GCNGC	5 cut(s)	198, 270, 520, 1231, 1234
BlsI	GCNGC	5 cut(s)	199, 271, 521, 1232, 1235
BmcAI	AGTACT	1 cut(s)	1044
Bme1390I	CCNGG	4 cut(s)	495, 581, 737, 1263
Bme18I	GGWCC	2 cut(s)	701, 963
BmgT120I	GGNCC	4 cut(s)	298, 620, 701, 963
BmiI	GGNNCC	3 cut(s)	964, 1164, 1267
BmrFI	CCNGG	4 cut(s)	495, 581, 737, 1263
BmsI	GCATC	3 cut(s)	232, 854, 1101
BplI	GAGNNNNNCTC	2 cut(s)	458, 490
Bpu10I	CCTNAGC	1 cut(s)	957
BpuEI	CTTGAG	1 cut(s)	881
BsaBI	GATNNNNATC	1 cut(s)	337
BsaI	GGTCTC	1 cut(s)	1106
BsaJI	CCNNGG	2 cut(s)	730, 1071
BsaWI	WCCGGW	1 cut(s)	1193
BsaXI	ACNNNNNCTCC	2 cut(s)	415, 445
Bsc4I	CCNNNNNNNGG	6 cut(s)	39, 184, 500, 586, 736, 992
Bse118I	RCCGGY	1 cut(s)	1159
Bse1I	ACTGG	2 cut(s)	649, 703
Bse3DI	GCAATG	2 cut(s)	645, 1083
Bse8I	GATNNNNATC	1 cut(s)	337
BseBI	CCWGG	4 cut(s)	495, 581, 737, 1263
BseDI	CCNNGG	2 cut(s)	730, 1071
BseGI	GGATG	2 cut(s)	58, 322
BseJI	GATNNNNATC	1 cut(s)	337
BseLI	CCNNNNNNNGG	6 cut(s)	39, 184, 500, 586, 736, 992
BseMI	GCAATG	2 cut(s)	645, 1083
BseMII	CTCAG	4 cut(s)	127, 155, 455, 638
BseNI	ACTGG	2 cut(s)	649, 703
BseRI	GAGGAG	1 cut(s)	471
BseXI	GCAGC	4 cut(s)	184, 531, 1242, 1245
BseYI	CCCAGC	1 cut(s)	1226
BsgI	GTGCAG	2 cut(s)	183, 538
Bsh1236I	CGCG	1 cut(s)	269
BshFI	GGCC	6 cut(s)	272, 300, 451, 622, 735, 1142
BshNI	GGYRCC	1 cut(s)	1265
BsiSI	CCGG	2 cut(s)	1160, 1194
BslFI	GGGAC	3 cut(s)	334, 516, 976
BslI	CCNNNNNNNGG	6 cut(s)	39, 184, 500, 586, 736, 992
BsmAI	GTCTC	4 cut(s)	397, 478, 987, 1106
BsmFI	GGGAC	3 cut(s)	334, 516, 976
BsnI	GGCC	6 cut(s)	272, 300, 451, 622, 735, 1142
Bso31I	GGTCTC	1 cut(s)	1106
Bsp1286I	GDGCHC	1 cut(s)	727
Bsp143I	GATC	5 cut(s)	16, 65, 289, 332, 745
BspACI	CCGC	1 cut(s)	269
BspANI	GGCC	6 cut(s)	272, 300, 451, 622, 735, 1142
BspCNI	CTCAG	4 cut(s)	126, 156, 454, 637
BspFNI	CGCG	1 cut(s)	269
BspHI	TCATGA	2 cut(s)	226, 1006
BspLI	GGNNCC	3 cut(s)	964, 1164, 1267
BspPI	GGATC	1 cut(s)	740
BspT107I	GGYRCC	1 cut(s)	1265
BspTNI	GGTCTC	1 cut(s)	1106
BsrDI	GCAATG	2 cut(s)	645, 1083
BsrFI	RCCGGY	1 cut(s)	1159
BsrI	ACTGG	2 cut(s)	649, 703
BssAI	RCCGGY	1 cut(s)	1159
BssECI	CCNNGG	2 cut(s)	730, 1071
BssMI	GATC	5 cut(s)	16, 65, 289, 332, 745
BssT1I	CCWWGG	1 cut(s)	1071
Bst2UI	CCWGG	4 cut(s)	495, 581, 737, 1263
Bst4CI	ACNGT	5 cut(s)	80, 204, 390, 755, 981
Bst6I	CTCTTC	2 cut(s)	459, 481
BstAPI	GCANNNNNTGC	2 cut(s)	206, 264
BstC8I	GCNNGC	3 cut(s)	302, 727, 913
BstDEI	CTNAG	6 cut(s)	113, 164, 441, 624, 905, 957
BstF5I	GGATG	2 cut(s)	58, 322
BstFNI	CGCG	1 cut(s)	269
BstHHI	GCGC	2 cut(s)	269, 911
BstKTI	GATC	5 cut(s)	19, 68, 292, 335, 748
BstMAI	GTCTC	4 cut(s)	397, 478, 987, 1106
BstMBI	GATC	5 cut(s)	16, 65, 289, 332, 745
BstMWI	GCNNNNNNNGC	7 cut(s)	189, 206, 264, 932, 1139, 1239, 1248
BstNI	CCWGG	4 cut(s)	495, 581, 737, 1263
BstSCI	CCNGG	4 cut(s)	493, 579, 735, 1261
BstSFI	CTRYAG	1 cut(s)	927
BstUI	CGCG	1 cut(s)	269
BstV1I	GCAGC	4 cut(s)	184, 531, 1242, 1245
BsuRI	GGCC	6 cut(s)	272, 300, 451, 622, 735, 1142
BtsCI	GGATG	2 cut(s)	58, 322
Cac8I	GCNNGC	3 cut(s)	302, 727, 913
CaiI	CAGNNNCTG	1 cut(s)	514
CciI	TCATGA	2 cut(s)	226, 1006
CfoI	GCGC	2 cut(s)	269, 911
Cfr10I	RCCGGY	1 cut(s)	1159
Cfr13I	GGNCC	4 cut(s)	298, 620, 701, 963
Csp6I	GTAC	3 cut(s)	696, 818, 1043
CviAII	CATG	8 cut(s)	39, 184, 193, 227, 325, 1007, 1108, 1290
CviQI	GTAC	3 cut(s)	696, 818, 1043
DdeI	CTNAG	6 cut(s)	113, 164, 441, 624, 905, 957
DpnI	GATC	5 cut(s)	18, 67, 291, 334, 747
DpnII	GATC	5 cut(s)	16, 65, 289, 332, 745
EaeI	YGGCCR	2 cut(s)	270, 1140
Eam1104I	CTCTTC	2 cut(s)	459, 481
EarI	CTCTTC	2 cut(s)	459, 481
Eco130I	CCWWGG	1 cut(s)	1071
Eco24I	GRGCYC	1 cut(s)	727
Eco31I	GGTCTC	1 cut(s)	1106
Eco47I	GGWCC	2 cut(s)	701, 963
Eco57I	CTGAAG	1 cut(s)	869
EcoRII	CCWGG	4 cut(s)	493, 579, 735, 1261
EcoT14I	CCWWGG	1 cut(s)	1071
EcoT22I	ATGCAT	1 cut(s)	1083
EcoT38I	GRGCYC	1 cut(s)	727
ErhI	CCWWGG	1 cut(s)	1071
FaeI	CATG	8 cut(s)	42, 187, 196, 230, 328, 1010, 1111, 1293
FalI	AAGNNNNNCTT	2 cut(s)	55, 87
FaqI	GGGAC	3 cut(s)	334, 516, 976
FatI	CATG	8 cut(s)	38, 183, 192, 226, 324, 1006, 1107, 1289
FbaI	TGATCA	2 cut(s)	16, 289
Fnu4HI	GCNGC	5 cut(s)	198, 270, 520, 1231, 1234
FokI	GGATG	2 cut(s)	65, 329
FriOI	GRGCYC	1 cut(s)	727
Fsp4HI	GCNGC	5 cut(s)	198, 270, 520, 1231, 1234
FspBI	CTAG	2 cut(s)	353, 705
GlaI	GCGC	2 cut(s)	268, 910
GluI	GCNGC	5 cut(s)	198, 270, 520, 1231, 1234
GsaI	CCCAGC	1 cut(s)	1230
HaeIII	GGCC	6 cut(s)	272, 300, 451, 622, 735, 1142
HapII	CCGG	2 cut(s)	1160, 1194
HhaI	GCGC	2 cut(s)	269, 911
Hin1II	CATG	8 cut(s)	42, 187, 196, 230, 328, 1010, 1111, 1293
Hin6I	GCGC	2 cut(s)	267, 909
HinP1I	GCGC	2 cut(s)	267, 909
HindIII	AAGCTT	1 cut(s)	459
HinfI	GANTC	7 cut(s)	10, 236, 405, 628, 802, 1151, 1169
HpaII	CCGG	2 cut(s)	1160, 1194
HphI	GGTGA	2 cut(s)	553, 1149
Hpy166II	GTNNAC	3 cut(s)	119, 386, 1219
Hpy188I	TCNGA	6 cut(s)	165, 241, 402, 553, 627, 774
Hpy188III	TCNNGA	5 cut(s)	14, 227, 280, 1007, 1166
Hpy8I	GTNNAC	3 cut(s)	119, 386, 1219
Hpy99I	CGWCG	1 cut(s)	1121
HpyAV	CCTTC	1 cut(s)	565
HpyCH4III	ACNGT	5 cut(s)	80, 204, 390, 755, 981
HpyCH4V	TGCA	9 cut(s)	200, 245, 258, 304, 519, 652, 808, 1081, 1107
HpyF10VI	GCNNNNNNNGC	7 cut(s)	189, 206, 264, 932, 1139, 1239, 1248
HpyF3I	CTNAG	6 cut(s)	113, 164, 441, 624, 905, 957
Hsp92II	CATG	8 cut(s)	42, 187, 196, 230, 328, 1010, 1111, 1293
HspAI	GCGC	2 cut(s)	267, 909
Ksp22I	TGATCA	2 cut(s)	16, 289
Kzo9I	GATC	5 cut(s)	16, 65, 289, 332, 745
LmnI	GCTCC	2 cut(s)	923, 1168
Lsp1109I	GCAGC	4 cut(s)	184, 531, 1242, 1245
LweI	GCATC	3 cut(s)	232, 854, 1101
MaeI	CTAG	2 cut(s)	353, 705
MaeIII	GTNAC	4 cut(s)	80, 320, 1066, 1244
MalI	GATC	5 cut(s)	18, 67, 291, 334, 747
MboI	GATC	5 cut(s)	16, 65, 289, 332, 745
MboII	GAAGA	6 cut(s)	146, 446, 468, 811, 875, 1198
MfeI	CAATTG	3 cut(s)	253, 262, 376
MhlI	GDGCHC	1 cut(s)	727
MlyI	GAGTC	2 cut(s)	245, 399
Mph1103I	ATGCAT	1 cut(s)	1083
MroXI	GAANNNNTTC	2 cut(s)	108, 768
MseI	TTAA	2 cut(s)	285, 557
MspA1I	CMGCKG	1 cut(s)	445
MspI	CCGG	2 cut(s)	1160, 1194
MspR9I	CCNGG	4 cut(s)	495, 581, 737, 1263
MunI	CAATTG	3 cut(s)	253, 262, 376
MvaI	CCWGG	4 cut(s)	495, 581, 737, 1263
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	7 cut(s)	189, 206, 264, 932, 1139, 1239, 1248
NdeII	GATC	5 cut(s)	16, 65, 289, 332, 745
NlaIII	CATG	8 cut(s)	42, 187, 196, 230, 328, 1010, 1111, 1293
NlaIV	GGNNCC	3 cut(s)	964, 1164, 1267
NmeAIII	GCCGAG	2 cut(s)	755, 1201
NsiI	ATGCAT	1 cut(s)	1083
PagI	TCATGA	2 cut(s)	226, 1006
PdmI	GAANNNNTTC	2 cut(s)	108, 768
PfeI	GAWTC	5 cut(s)	10, 628, 802, 1151, 1169
PflMI	CCANNNNNTGG	3 cut(s)	184, 586, 992
PkrI	GCNGC	5 cut(s)	199, 271, 521, 1232, 1235
PleI	GAGTC	2 cut(s)	244, 399
PpsI	GAGTC	2 cut(s)	244, 399
PshBI	ATTAAT	1 cut(s)	285
Psp6I	CCWGG	4 cut(s)	493, 579, 735, 1261
PspFI	CCCAGC	1 cut(s)	1226
PspGI	CCWGG	4 cut(s)	493, 579, 735, 1261
PspN4I	GGNNCC	3 cut(s)	964, 1164, 1267
PspPI	GGNCC	4 cut(s)	298, 620, 701, 963
PstNI	CAGNNNCTG	1 cut(s)	514
PvuII	CAGCTG	1 cut(s)	445
RsaI	GTAC	3 cut(s)	697, 819, 1044
RsaNI	GTAC	3 cut(s)	696, 818, 1043
SaqAI	TTAA	2 cut(s)	285, 557
SatI	GCNGC	5 cut(s)	198, 270, 520, 1231, 1234
Sau3AI	GATC	5 cut(s)	16, 65, 289, 332, 745
Sau96I	GGNCC	4 cut(s)	298, 620, 701, 963
ScaI	AGTACT	1 cut(s)	1044
SchI	GAGTC	2 cut(s)	245, 399
ScrFI	CCNGG	4 cut(s)	495, 581, 737, 1263
SduI	GDGCHC	1 cut(s)	727
SfaNI	GCATC	3 cut(s)	232, 854, 1101
SfcI	CTRYAG	1 cut(s)	927
SinI	GGWCC	2 cut(s)	701, 963
SmlI	CTYRAG	1 cut(s)	896
SmoI	CTYRAG	1 cut(s)	896
SsiI	CCGC	1 cut(s)	269
SspMI	CTAG	2 cut(s)	353, 705
StyD4I	CCNGG	4 cut(s)	493, 579, 735, 1261
StyI	CCWWGG	1 cut(s)	1071
TaaI	ACNGT	5 cut(s)	80, 204, 390, 755, 981
TaqI	TCGA	2 cut(s)	281, 867
TatI	WGTACW	2 cut(s)	695, 1042
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	5 cut(s)	10, 628, 802, 1151, 1169
Tru1I	TTAA	2 cut(s)	285, 557
Tru9I	TTAA	2 cut(s)	285, 557
TseI	GCWGC	4 cut(s)	197, 519, 1230, 1233
TspDTI	ATGAA	4 cut(s)	204, 812, 873, 1038
Van91I	CCANNNNNTGG	3 cut(s)	184, 586, 992
VpaK11BI	GGWCC	2 cut(s)	701, 963
VspI	ATTAAT	1 cut(s)	285
XapI	RAATTY	1 cut(s)	1180
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1135
XmnI	GAANNNNTTC	2 cut(s)	108, 768
XspI	CTAG	2 cut(s)	353, 705
ZrmI	AGTACT	1 cut(s)	1044
Zsp2I	ATGCAT	1 cut(s)	1083

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.