Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0007647

Physical Location & Seq

Genomic Coordinates Reverse (-)

8237231 .. 8239264

Gene Structure 2034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g11680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTATCTTCTGAGAAGGCAATCTCAAAAACCAACCCCTGAGGATGATTCTGCACAAAAAGATGCAAAGGTCAAAGAACTCAGGGCAGCACTTGGGCCCCTGTCTGGACGCAATTTGAAGTACTGCACCGATGGATGCCTTCGGAGATATTTGGAAGCTCGGAGCTGGAATCTTGAGAAGGCGAAGAAAATGGTTGAAGAGACACTGAAGTGGAGGGCAATTTATAAGCCTGAAGAAACCCGTTGGCATGAAATAGCGCATGAAGGTGAGACTGGCAAAGTATTTAGAGCTAAGTTCCATGATCGACTTGGGAGGAGCGTGCTTATAATGAGGCCAGCACAGCAGAACACAAACTCGCCCGAAGATAATATCCGCCATTTAGTCTATCTTATAGAAAATGGTATCCTCAACCTTCCCGAAGGTCAAGAACAGATGTCATGGTTGGTTGACTTCACTGGATTCTCAATCAACACCAATGTCAGTGTCAAGACAGCCCGGGATATTATTAACATTCTACAGAACCATTACCCCGAGAGGCTTGCGGTTGCATTTCTATATAACCCACCAAGAATTTTTCAGGCATTCTGGAAGGCTGTCAAATACTTCCTGGATGCCAAGACCTCTCAGAAGGTGAAGTTTGTATACCCGAAAGGTAAAGAAAGTGTGGAGCTCATGAAGACATTCTTTGATGCTGAAAATCTTCCGAGCGAGTTTGGGGGACAAGCCACCCTAAAGTATGACCACGAGGAGTTTTCACGAATGATGGCGGAGGATGATGTGAAAACTGCCAAGTTCTGGGGATTTGATGAGAAGCCTTTCCATATAACAAATGGGCATTCTGGAGCAGAGGTGGCACCGCAGCCTCTCCCCGTTGCACCCGTGGCTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

297

Amino Acids

34.14

Weight (kDa)

8.83

Isoelectric Point (pI)

58.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	91 - 240	3.8e-36	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	104 - 249	3.7e-11	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36640 AT4G36640 AT4G36640
fragaria_vesca	FvH4_1g13330 FvH4_1g13330 FvH4_1g13330
malus_domestica	MD02G1148100.v1.1 MD15G1262300.v1.1
prunus_persica	Prupe.7G154300_v2.0.a1 Prupe.7G154300_v2.0.a1
pyrus_communis	pycom02g11680 pycom15g22920
rosa_chinensis	RchiOBHm_Chr2g0101611
rosa_laevigata	RLG00000017094
rosa_multiflora	Rmu_sc0006153.1_g000004
rosa_roxburghii	Rroxscaffold_2G00141150
rosa_rugosa	Rorug02G0101100 Rorug02G0101200 Rorug02G0101300
rosa_samantha	Rh2AG148400 Rh2BG153800 Rh2CG154200 Rh2DG154000
rosa_wichuraiana	Rw2G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	225, 326
AccB1I	GGYRCC	1 cut(s)	853
AccB7I	CCANNNNNTGG	1 cut(s)	795
AccI	GTMKAC	1 cut(s)	642
AciI	CCGC	4 cut(s)	373, 542, 767, 857
AcsI	RAATTY	1 cut(s)	570
AcuI	CTGAAG	2 cut(s)	227, 252
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	2 cut(s)	104, 795
AgsI	TTSAA	2 cut(s)	118, 197
AjnI	CCWGG	1 cut(s)	606
AleI	CACNNNNGTG	1 cut(s)	208
AluBI	AGCT	5 cut(s)	158, 165, 290, 670, 888
AluI	AGCT	5 cut(s)	158, 165, 290, 670, 888
Alw21I	GWGCWC	1 cut(s)	672
Alw26I	GTCTC	2 cut(s)	194, 263
Ama87I	CYCGRG	2 cut(s)	495, 530
AoxI	GGCC	2 cut(s)	95, 332
ApaI	GGGCCC	1 cut(s)	99
ApeKI	GCWGC	2 cut(s)	86, 859
ApoI	RAATTY	1 cut(s)	570
Asp700I	GAANNNNTTC	3 cut(s)	680, 699, 815
AspLEI	GCGC	1 cut(s)	259
AspS9I	GGNCC	2 cut(s)	95, 96
AsuC2I	CCSGG	2 cut(s)	496, 497
AsuHPI	GGTGA	2 cut(s)	278, 643
AsuNHI	GCTAGC	1 cut(s)	884
AvaI	CYCGRG	2 cut(s)	495, 530
AxyI	CCTNAGG	1 cut(s)	39
BaeGI	GKGCMC	1 cut(s)	99
BanI	GGYRCC	1 cut(s)	853
BanII	GRGCYC	2 cut(s)	99, 672
BarI	GAAGNNNNNNTAC	2 cut(s)	626, 658
BauI	CACGAG	1 cut(s)	743
BbsI	GAAGAC	1 cut(s)	683
Bbv12I	GWGCWC	1 cut(s)	672
BbvI	GCAGC	2 cut(s)	98, 871
BccI	CCATC	2 cut(s)	125, 757
BcgI	CGANNNNNNTGC	2 cut(s)	521, 555
BciT130I	CCWGG	1 cut(s)	608
BciVI	GTATCC	1 cut(s)	413
BcnI	CCSGG	2 cut(s)	496, 497
BcoDI	GTCTC	2 cut(s)	194, 263
BfaI	CTAG	1 cut(s)	885
BfmI	CTRYAG	1 cut(s)	515
BfuI	GTATCC	1 cut(s)	413
BisI	GCNGC	2 cut(s)	87, 860
BlsI	GCNGC	2 cut(s)	88, 861
BmcAI	AGTACT	1 cut(s)	122
Bme1390I	CCNGG	3 cut(s)	496, 497, 608
BmeT110I	CYCGRG	2 cut(s)	495, 530
BmgT120I	GGNCC	2 cut(s)	95, 96
BmiI	GGNNCC	3 cut(s)	97, 98, 855
BmrFI	CCNGG	3 cut(s)	496, 497, 608
BmsI	GCATC	4 cut(s)	52, 125, 601, 679
BmtI	GCTAGC	1 cut(s)	888
BpiI	GAAGAC	1 cut(s)	683
BpmI	CTGGAG	1 cut(s)	861
BpuEI	CTTGAG	1 cut(s)	194
BpuMI	CCSGG	2 cut(s)	496, 497
BsaJI	CCNNGG	2 cut(s)	495, 879
BsaXI	ACNNNNNCTCC	2 cut(s)	834, 864
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 795
Bse1I	ACTGG	2 cut(s)	277, 460
Bse21I	CCTNAGG	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	608
BseDI	CCNNGG	2 cut(s)	495, 879
BseGI	GGATG	4 cut(s)	49, 140, 616, 778
BseLI	CCNNNNNNNGG	2 cut(s)	104, 795
BseMII	CTCAG	3 cut(s)	30, 94, 638
BseNI	ACTGG	2 cut(s)	277, 460
BseRI	GAGGAG	2 cut(s)	328, 761
BseSI	GKGCMC	1 cut(s)	99
BseXI	GCAGC	2 cut(s)	98, 871
BsgI	GTGCAG	2 cut(s)	36, 109
BshFI	GGCC	2 cut(s)	97, 334
BshNI	GGYRCC	1 cut(s)	853
BsiHKAI	GWGCWC	1 cut(s)	672
BsiHKCI	CYCGRG	2 cut(s)	495, 530
BsiSI	CCGG	1 cut(s)	496
BslFI	GGGAC	1 cut(s)	732
BslI	CCNNNNNNNGG	2 cut(s)	104, 795
BsmAI	GTCTC	2 cut(s)	194, 263
BsmFI	GGGAC	1 cut(s)	732
BsmI	GAATGC	2 cut(s)	581, 835
BsnI	GGCC	2 cut(s)	97, 334
BsoBI	CYCGRG	2 cut(s)	495, 530
Bsp120I	GGGCCC	1 cut(s)	95
Bsp1286I	GDGCHC	2 cut(s)	99, 672
Bsp143I	GATC	1 cut(s)	301
BspACI	CCGC	4 cut(s)	373, 542, 767, 857
BspANI	GGCC	2 cut(s)	97, 334
BspCNI	CTCAG	3 cut(s)	31, 93, 637
BspHI	TCATGA	1 cut(s)	672
BspLI	GGNNCC	3 cut(s)	97, 98, 855
BspOI	GCTAGC	1 cut(s)	888
BspT107I	GGYRCC	1 cut(s)	853
BsrI	ACTGG	2 cut(s)	277, 460
BssECI	CCNNGG	2 cut(s)	495, 879
BssMI	GATC	1 cut(s)	301
BssNAI	GTATAC	1 cut(s)	643
BssSI	CACGAG	1 cut(s)	743
Bst1107I	GTATAC	1 cut(s)	643
Bst2BI	CACGAG	1 cut(s)	743
Bst2UI	CCWGG	1 cut(s)	608
Bst6I	CTCTTC	1 cut(s)	192
BstC8I	GCNNGC	4 cut(s)	320, 336, 540, 886
BstDEI	CTNAG	5 cut(s)	11, 39, 80, 291, 624
BstDSI	CCRYGG	1 cut(s)	879
BstF5I	GGATG	4 cut(s)	49, 140, 616, 778
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	1 cut(s)	304
BstMAI	GTCTC	2 cut(s)	194, 263
BstMBI	GATC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	3 cut(s)	340, 851, 881
BstNI	CCWGG	1 cut(s)	608
BstSCI	CCNGG	3 cut(s)	494, 495, 606
BstSFI	CTRYAG	1 cut(s)	515
BstSLI	GKGCMC	1 cut(s)	99
BstV1I	GCAGC	2 cut(s)	98, 871
BstV2I	GAAGAC	1 cut(s)	683
BstZ17I	GTATAC	1 cut(s)	643
Bsu36I	CCTNAGG	1 cut(s)	39
BsuI	GTATCC	1 cut(s)	413
BsuRI	GGCC	2 cut(s)	97, 334
BtgI	CCRYGG	1 cut(s)	879
BtsCI	GGATG	4 cut(s)	49, 140, 616, 778
BtsIMutI	CAGTG	3 cut(s)	203, 453, 487
Cac8I	GCNNGC	4 cut(s)	320, 336, 540, 886
CciI	TCATGA	1 cut(s)	672
CfoI	GCGC	1 cut(s)	259
Cfr13I	GGNCC	2 cut(s)	95, 96
Cfr9I	CCCGGG	1 cut(s)	495
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	5 cut(s)	248, 260, 299, 438, 673
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	5 cut(s)	11, 39, 80, 291, 624
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
EciI	GGCGGA	2 cut(s)	362, 782
Ecl136II	GAGCTC	1 cut(s)	670
Eco24I	GRGCYC	2 cut(s)	99, 672
Eco53kI	GAGCTC	1 cut(s)	670
Eco57I	CTGAAG	2 cut(s)	227, 252
Eco81I	CCTNAGG	1 cut(s)	39
Eco88I	CYCGRG	2 cut(s)	495, 530
EcoICRI	GAGCTC	1 cut(s)	670
EcoO109I	RGGNCCY	1 cut(s)	96
EcoRII	CCWGG	1 cut(s)	606
EcoT38I	GRGCYC	2 cut(s)	99, 672
FaeI	CATG	5 cut(s)	251, 263, 302, 441, 676
FalI	AAGNNNNNCTT	2 cut(s)	668, 700
FaqI	GGGAC	1 cut(s)	732
FatI	CATG	5 cut(s)	247, 259, 298, 437, 672
FblI	GTMKAC	1 cut(s)	642
Fnu4HI	GCNGC	2 cut(s)	87, 860
FokI	GGATG	4 cut(s)	56, 147, 623, 785
FriOI	GRGCYC	2 cut(s)	99, 672
Fsp4HI	GCNGC	2 cut(s)	87, 860
FspBI	CTAG	1 cut(s)	885
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	2 cut(s)	87, 860
GsuI	CTGGAG	1 cut(s)	861
HaeIII	GGCC	2 cut(s)	97, 334
HapII	CCGG	1 cut(s)	496
HgaI	GACGC	1 cut(s)	117
HhaI	GCGC	1 cut(s)	259
Hin1II	CATG	5 cut(s)	251, 263, 302, 441, 676
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HinfI	GANTC	3 cut(s)	47, 169, 459
HpaII	CCGG	1 cut(s)	496
HphI	GGTGA	2 cut(s)	278, 643
Hpy166II	GTNNAC	2 cut(s)	448, 643
Hpy188I	TCNGA	5 cut(s)	12, 144, 162, 627, 705
Hpy188III	TCNNGA	9 cut(s)	105, 173, 416, 425, 487, 586, 673, 756, 840
Hpy8I	GTNNAC	2 cut(s)	448, 643
HpyAV	CCTTC	8 cut(s)	9, 149, 172, 257, 413, 422, 583, 622
HpyCH4V	TGCA	5 cut(s)	53, 65, 126, 548, 875
HpyF10VI	GCNNNNNNNGC	3 cut(s)	340, 851, 881
HpyF3I	CTNAG	5 cut(s)	11, 39, 80, 291, 624
Hsp92II	CATG	5 cut(s)	251, 263, 302, 441, 676
HspAI	GCGC	1 cut(s)	257
Kzo9I	GATC	1 cut(s)	301
LmnI	GCTCC	4 cut(s)	162, 315, 667, 842
Lsp1109I	GCAGC	2 cut(s)	98, 871
LweI	GCATC	4 cut(s)	52, 125, 601, 679
MaeI	CTAG	1 cut(s)	885
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MboII	GAAGA	6 cut(s)	196, 209, 245, 374, 688, 692
MhlI	GDGCHC	2 cut(s)	99, 672
MluCI	AATT	3 cut(s)	112, 219, 570
MroXI	GAANNNNTTC	3 cut(s)	680, 699, 815
MseI	TTAA	1 cut(s)	507
MslI	CAYNNNNRTG	2 cut(s)	208, 264
MspI	CCGG	1 cut(s)	496
MspR9I	CCNGG	3 cut(s)	496, 497, 608
Mva1269I	GAATGC	2 cut(s)	581, 835
MvaI	CCWGG	1 cut(s)	608
MwoI	GCNNNNNNNGC	3 cut(s)	340, 851, 881
NciI	CCSGG	2 cut(s)	496, 497
NdeII	GATC	1 cut(s)	301
NheI	GCTAGC	1 cut(s)	884
NlaIII	CATG	5 cut(s)	251, 263, 302, 441, 676
NlaIV	GGNNCC	3 cut(s)	97, 98, 855
OliI	CACNNNNGTG	1 cut(s)	208
PagI	TCATGA	1 cut(s)	672
PctI	GAATGC	2 cut(s)	581, 835
PdmI	GAANNNNTTC	3 cut(s)	680, 699, 815
PfeI	GAWTC	3 cut(s)	47, 169, 459
PflMI	CCANNNNNTGG	1 cut(s)	795
PfoI	TCCNGGA	1 cut(s)	606
PkrI	GCNGC	2 cut(s)	88, 861
PsiI	TTATAA	2 cut(s)	225, 326
Psp124BI	GAGCTC	1 cut(s)	672
Psp6I	CCWGG	1 cut(s)	606
PspGI	CCWGG	1 cut(s)	606
PspN4I	GGNNCC	3 cut(s)	97, 98, 855
PspOMI	GGGCCC	1 cut(s)	95
PspPI	GGNCC	2 cut(s)	95, 96
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
RseI	CAYNNNNRTG	2 cut(s)	208, 264
SacI	GAGCTC	1 cut(s)	672
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	2 cut(s)	87, 860
Sau3AI	GATC	1 cut(s)	301
Sau96I	GGNCC	2 cut(s)	95, 96
ScaI	AGTACT	1 cut(s)	122
ScrFI	CCNGG	3 cut(s)	496, 497, 608
SduI	GDGCHC	2 cut(s)	99, 672
SfaNI	GCATC	4 cut(s)	52, 125, 601, 679
SfcI	CTRYAG	1 cut(s)	515
SmaI	CCCGGG	1 cut(s)	497
SmiMI	CAYNNNNRTG	2 cut(s)	208, 264
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	3 cut(s)	112, 219, 570
SsiI	CCGC	4 cut(s)	373, 542, 767, 857
SspMI	CTAG	1 cut(s)	885
SstI	GAGCTC	1 cut(s)	672
StyD4I	CCNGG	3 cut(s)	494, 495, 606
TaqI	TCGA	1 cut(s)	304
TasI	AATT	3 cut(s)	112, 219, 570
TatI	WGTACW	1 cut(s)	120
TfiI	GAWTC	3 cut(s)	47, 169, 459
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	3 cut(s)	210, 460, 487
TseI	GCWGC	2 cut(s)	86, 859
TspDTI	ATGAA	3 cut(s)	264, 276, 689
TspMI	CCCGGG	1 cut(s)	495
TspRI	CASTG	3 cut(s)	210, 460, 487
Van91I	CCANNNNNTGG	1 cut(s)	795
XapI	RAATTY	1 cut(s)	570
XcmI	CCANNNNNNNNNTGG	2 cut(s)	305, 827
XmaI	CCCGGG	1 cut(s)	495
XmiI	GTMKAC	1 cut(s)	642
XmnI	GAANNNNTTC	3 cut(s)	680, 699, 815
XspI	CTAG	1 cut(s)	885
ZrmI	AGTACT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.