Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007647

Physical Location & Seq

Genomic Coordinates Reverse (-)

13159884 .. 13162972

Gene Structure 3089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47620

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGTATCTTCTGAGGAGAAAAACTCAGAACCCTGTGGAGGATGATTCTGCACAAAAAGAGGCACAGAAAGAAGCAAAGATCAAAGAACTCAGGGCTGCACTCGGCCCGTTATCTGGGCGTAGTTTGAAGTACTGCACGGATGCATGCCTTGGGAGATATCTGGAAGCAAGGAACTGGAATCTTGAGAAGGCGAAGAAAATGATAGAGGAGACACTCAGGTGGAGGGCAAGTTATAAGCCTGAAGAAATCCGTTGGCATGAAGTAGCACATGAAGGTGAGACTGGCAAAGTGTCGAGAGCAAATTTTCATGATCGACTTGGGAGGACTGTACTTATAATGAGGCCAGCCATGCAGAACACAAATTCACCGGAAGGCAATGTTCGCCATTTAGTCTATCTTATAGAAAATGGTATCCTCAACCTTCGTGAAGGTCAAGAACAAATGTCATGGTTGATTGACTTCACTGGCTTCTCACTGAACACCAATGTTTCTGTCAAGACAGCTCGTGAATGTATCAACATTCTACAGAACCATTACCCTGAGAGGCTTGCAGTTGCATTTCTTTACAACCCACCTAGGATTTTTCAGGCATTCTGGAAGGCTGTCAAGTACTTCCTGGATGCCAAGACATTTCAGAAGGTGAAGTTTGTTTACCCCAAAGGTAAGGAAAGTGTGGAGCTCATGAAAACTTTCTTTGATGTTGACAATCTTCCAGTCGAGTTTGGGGGACAGACCACCCTAAAGTACGATCACGAGGAGTTTTCACGTATGATGGCCCAGGATGATGTGAAAACTGCCAAGTTATGGGGACTTGATGAGAAGCCATGCAATATAGCAAATGGACATATGGGAGCAGAGGTGGCACCAGAGCCTATTGCAACCGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

295

Amino Acids

34.02

Weight (kDa)

8.71

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_N	PF03765	44 - 70	6.6e-07	CRAL/TRIO, N-terminal domain
CRAL_TRIO	PF00650	96 - 243	4.4e-34	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	123 - 252	1.1e-08	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36640 AT4G36640 AT4G36640
fragaria_vesca	FvH4_1g13330 FvH4_1g13330 FvH4_1g13330
malus_domestica	MD02G1148100.v1.1 MD15G1262300.v1.1
prunus_persica	Prupe.7G154300_v2.0.a1 Prupe.7G154300_v2.0.a1
pyrus_communis	pycom02g11680 pycom15g22920
rosa_chinensis	RchiOBHm_Chr2g0101611
rosa_laevigata	RLG00000017094
rosa_multiflora	Rmu_sc0006153.1_g000004
rosa_roxburghii	Rroxscaffold_2G00141150
rosa_rugosa	Rorug02G0101100 Rorug02G0101200 Rorug02G0101300
rosa_samantha	Rh2AG148400 Rh2BG153800 Rh2CG154200 Rh2DG154000
rosa_wichuraiana	Rw2G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	234, 335
AccB1I	GGYRCC	1 cut(s)	862
AccB7I	CCANNNNNTGG	1 cut(s)	804
AciI	CCGC	1 cut(s)	882
AcsI	RAATTY	2 cut(s)	301, 361
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	4 cut(s)	131, 330, 611, 746
AfiI	CCNNNNNNNGG	3 cut(s)	37, 113, 804
AgsI	TTSAA	1 cut(s)	127
AjnI	CCWGG	2 cut(s)	615, 777
AleI	CACNNNNGTG	1 cut(s)	217
AluBI	AGCT	2 cut(s)	503, 679
AluI	AGCT	2 cut(s)	503, 679
Alw21I	GWGCWC	1 cut(s)	681
Alw26I	GTCTC	2 cut(s)	203, 272
AoxI	GGCC	3 cut(s)	103, 341, 774
ApeKI	GCWGC	1 cut(s)	95
ApoI	RAATTY	2 cut(s)	301, 361
Asp700I	GAANNNNTTC	1 cut(s)	689
AspA2I	CCTAGG	1 cut(s)	575
AspS9I	GGNCC	2 cut(s)	104, 775
AsuHPI	GGTGA	3 cut(s)	287, 357, 652
AvrII	CCTAGG	1 cut(s)	575
BanI	GGYRCC	1 cut(s)	862
BanII	GRGCYC	1 cut(s)	681
BarI	GAAGNNNNNNTAC	2 cut(s)	635, 667
BauI	CACGAG	2 cut(s)	504, 752
Bbv12I	GWGCWC	1 cut(s)	681
BbvI	GCAGC	1 cut(s)	82
BccI	CCATC	1 cut(s)	766
BciT130I	CCWGG	2 cut(s)	617, 779
BciVI	GTATCC	1 cut(s)	422
BcoDI	GTCTC	2 cut(s)	203, 272
BfaI	CTAG	1 cut(s)	576
BfmI	CTRYAG	1 cut(s)	524
BfuI	GTATCC	1 cut(s)	422
BisI	GCNGC	1 cut(s)	96
BlnI	CCTAGG	1 cut(s)	575
BlsI	GCNGC	1 cut(s)	97
BmcAI	AGTACT	2 cut(s)	131, 611
Bme1390I	CCNGG	2 cut(s)	617, 779
BmgT120I	GGNCC	2 cut(s)	104, 775
BmiI	GGNNCC	1 cut(s)	864
BmrFI	CCNGG	2 cut(s)	617, 779
BmsI	GCATC	2 cut(s)	130, 610
BplI	GAGNNNNNCTC	2 cut(s)	7, 39
BpuEI	CTTGAG	1 cut(s)	203
BsaAI	YACGTR	1 cut(s)	767
BsaJI	CCNNGG	3 cut(s)	148, 575, 777
BsaWI	WCCGGW	1 cut(s)	367
BsaXI	ACNNNNNCTCC	4 cut(s)	214, 244, 843, 873
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 113, 804
Bse1I	ACTGG	4 cut(s)	179, 286, 469, 713
Bse3DI	GCAATG	1 cut(s)	382
BseBI	CCWGG	2 cut(s)	617, 779
BseDI	CCNNGG	3 cut(s)	148, 575, 777
BseGI	GGATG	4 cut(s)	46, 145, 625, 787
BseLI	CCNNNNNNNGG	3 cut(s)	37, 113, 804
BseMI	GCAATG	1 cut(s)	382
BseMII	CTCAG	4 cut(s)	38, 103, 229, 531
BseNI	ACTGG	4 cut(s)	179, 286, 469, 713
BseRI	GAGGAG	3 cut(s)	28, 221, 770
BseXI	GCAGC	1 cut(s)	82
BsgI	GTGCAG	3 cut(s)	33, 81, 118
BshFI	GGCC	3 cut(s)	105, 343, 776
BshNI	GGYRCC	1 cut(s)	862
BsiHKAI	GWGCWC	1 cut(s)	681
BsiSI	CCGG	1 cut(s)	368
BslFI	GGGAC	2 cut(s)	741, 822
BslI	CCNNNNNNNGG	3 cut(s)	37, 113, 804
BsmAI	GTCTC	2 cut(s)	203, 272
BsmFI	GGGAC	2 cut(s)	741, 822
BsmI	GAATGC	1 cut(s)	590
BsnI	GGCC	3 cut(s)	105, 343, 776
Bsp1286I	GDGCHC	1 cut(s)	681
Bsp143I	GATC	3 cut(s)	78, 310, 748
BspACI	CCGC	1 cut(s)	882
BspANI	GGCC	3 cut(s)	105, 343, 776
BspCNI	CTCAG	4 cut(s)	37, 102, 228, 532
BspHI	TCATGA	2 cut(s)	307, 681
BspLI	GGNNCC	1 cut(s)	864
BspT107I	GGYRCC	1 cut(s)	862
BsrDI	GCAATG	1 cut(s)	382
BsrI	ACTGG	4 cut(s)	179, 286, 469, 713
BssECI	CCNNGG	3 cut(s)	148, 575, 777
BssMI	GATC	3 cut(s)	78, 310, 748
BssSI	CACGAG	2 cut(s)	504, 752
BssT1I	CCWWGG	2 cut(s)	148, 575
Bst2BI	CACGAG	2 cut(s)	504, 752
Bst2UI	CCWGG	2 cut(s)	617, 779
Bst4CI	ACNGT	1 cut(s)	328
BstBAI	YACGTR	1 cut(s)	767
BstC8I	GCNNGC	3 cut(s)	145, 345, 549
BstDEI	CTNAG	5 cut(s)	11, 24, 89, 215, 540
BstF5I	GGATG	4 cut(s)	46, 145, 625, 787
BstKTI	GATC	3 cut(s)	81, 313, 751
BstMAI	GTCTC	2 cut(s)	203, 272
BstMBI	GATC	3 cut(s)	78, 310, 748
BstMWI	GCNNNNNNNGC	3 cut(s)	349, 381, 860
BstNI	CCWGG	2 cut(s)	617, 779
BstNSI	RCATGY	1 cut(s)	147
BstSCI	CCNGG	2 cut(s)	615, 777
BstSFI	CTRYAG	1 cut(s)	524
BstV1I	GCAGC	1 cut(s)	82
BsuI	GTATCC	1 cut(s)	422
BsuRI	GGCC	3 cut(s)	105, 343, 776
BtsCI	GGATG	4 cut(s)	46, 145, 625, 787
BtsIMutI	CAGTG	2 cut(s)	462, 473
Cac8I	GCNNGC	3 cut(s)	145, 345, 549
CciI	TCATGA	2 cut(s)	307, 681
Cfr13I	GGNCC	2 cut(s)	104, 775
Csp6I	GTAC	4 cut(s)	130, 329, 610, 745
CviAII	CATG	8 cut(s)	144, 257, 269, 308, 349, 447, 682, 825
CviQI	GTAC	4 cut(s)	130, 329, 610, 745
DdeI	CTNAG	5 cut(s)	11, 24, 89, 215, 540
DpnI	GATC	3 cut(s)	80, 312, 750
DpnII	GATC	3 cut(s)	78, 310, 748
Ecl136II	GAGCTC	1 cut(s)	679
Eco130I	CCWWGG	2 cut(s)	148, 575
Eco24I	GRGCYC	1 cut(s)	681
Eco32I	GATATC	1 cut(s)	158
Eco53kI	GAGCTC	1 cut(s)	679
Eco57I	CTGAAG	1 cut(s)	261
EcoICRI	GAGCTC	1 cut(s)	679
EcoRII	CCWGG	2 cut(s)	615, 777
EcoRV	GATATC	1 cut(s)	158
EcoT14I	CCWWGG	2 cut(s)	148, 575
EcoT22I	ATGCAT	1 cut(s)	145
EcoT38I	GRGCYC	1 cut(s)	681
ErhI	CCWWGG	2 cut(s)	148, 575
FaeI	CATG	8 cut(s)	147, 260, 272, 311, 352, 450, 685, 828
FaqI	GGGAC	2 cut(s)	741, 822
FatI	CATG	8 cut(s)	143, 256, 268, 307, 348, 446, 681, 824
FauNDI	CATATG	1 cut(s)	846
Fnu4HI	GCNGC	1 cut(s)	96
FokI	GGATG	4 cut(s)	53, 152, 632, 794
FriOI	GRGCYC	1 cut(s)	681
Fsp4HI	GCNGC	1 cut(s)	96
FspBI	CTAG	1 cut(s)	576
GluI	GCNGC	1 cut(s)	96
HaeIII	GGCC	3 cut(s)	105, 343, 776
HapII	CCGG	1 cut(s)	368
Hin1II	CATG	8 cut(s)	147, 260, 272, 311, 352, 450, 685, 828
HincII	GTYRAC	1 cut(s)	703
HindII	GTYRAC	1 cut(s)	703
HinfI	GANTC	2 cut(s)	44, 178
HpaII	CCGG	1 cut(s)	368
HphI	GGTGA	3 cut(s)	287, 357, 652
Hpy166II	GTNNAC	2 cut(s)	652, 703
Hpy188I	TCNGA	3 cut(s)	12, 27, 636
Hpy8I	GTNNAC	2 cut(s)	652, 703
HpyAV	CCTTC	7 cut(s)	181, 266, 365, 422, 431, 592, 631
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4IV	ACGT	1 cut(s)	766
HpyCH4V	TGCA	9 cut(s)	50, 98, 135, 143, 352, 551, 557, 828, 878
HpyF10VI	GCNNNNNNNGC	3 cut(s)	349, 381, 860
HpyF3I	CTNAG	5 cut(s)	11, 24, 89, 215, 540
HpySE526I	ACGT	1 cut(s)	766
Hsp92II	CATG	8 cut(s)	147, 260, 272, 311, 352, 450, 685, 828
Kzo9I	GATC	3 cut(s)	78, 310, 748
LmnI	GCTCC	2 cut(s)	676, 851
Lsp1109I	GCAGC	1 cut(s)	82
LweI	GCATC	2 cut(s)	130, 610
MaeI	CTAG	1 cut(s)	576
MaeII	ACGT	1 cut(s)	766
MalI	GATC	3 cut(s)	80, 312, 750
MboI	GATC	3 cut(s)	78, 310, 748
MboII	GAAGA	3 cut(s)	205, 254, 701
MhlI	GDGCHC	1 cut(s)	681
MluCI	AATT	2 cut(s)	301, 361
Mph1103I	ATGCAT	1 cut(s)	145
MroXI	GAANNNNTTC	1 cut(s)	689
MslI	CAYNNNNRTG	2 cut(s)	217, 273
MspI	CCGG	1 cut(s)	368
MspR9I	CCNGG	2 cut(s)	617, 779
Mva1269I	GAATGC	1 cut(s)	590
MvaI	CCWGG	2 cut(s)	617, 779
MwoI	GCNNNNNNNGC	3 cut(s)	349, 381, 860
NdeI	CATATG	1 cut(s)	846
NdeII	GATC	3 cut(s)	78, 310, 748
NlaIII	CATG	8 cut(s)	147, 260, 272, 311, 352, 450, 685, 828
NlaIV	GGNNCC	1 cut(s)	864
NmeAIII	GCCGAG	1 cut(s)	81
NsiI	ATGCAT	1 cut(s)	145
NspI	RCATGY	1 cut(s)	147
OliI	CACNNNNGTG	1 cut(s)	217
PaeI	GCATGC	1 cut(s)	147
PagI	TCATGA	2 cut(s)	307, 681
PctI	GAATGC	1 cut(s)	590
PdmI	GAANNNNTTC	1 cut(s)	689
PfeI	GAWTC	2 cut(s)	44, 178
PflMI	CCANNNNNTGG	1 cut(s)	804
PfoI	TCCNGGA	1 cut(s)	615
PkrI	GCNGC	1 cut(s)	97
Ppu21I	YACGTR	1 cut(s)	767
PsiI	TTATAA	2 cut(s)	234, 335
Psp124BI	GAGCTC	1 cut(s)	681
Psp6I	CCWGG	2 cut(s)	615, 777
PspGI	CCWGG	2 cut(s)	615, 777
PspN4I	GGNNCC	1 cut(s)	864
PspPI	GGNCC	2 cut(s)	104, 775
RsaI	GTAC	4 cut(s)	131, 330, 611, 746
RsaNI	GTAC	4 cut(s)	130, 329, 610, 745
RseI	CAYNNNNRTG	2 cut(s)	217, 273
SacI	GAGCTC	1 cut(s)	681
SatI	GCNGC	1 cut(s)	96
Sau3AI	GATC	3 cut(s)	78, 310, 748
Sau96I	GGNCC	2 cut(s)	104, 775
ScaI	AGTACT	2 cut(s)	131, 611
ScrFI	CCNGG	2 cut(s)	617, 779
SduI	GDGCHC	1 cut(s)	681
SfaNI	GCATC	2 cut(s)	130, 610
SfcI	CTRYAG	1 cut(s)	524
SmiMI	CAYNNNNRTG	2 cut(s)	217, 273
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
SphI	GCATGC	1 cut(s)	147
Sse9I	AATT	2 cut(s)	301, 361
SsiI	CCGC	1 cut(s)	882
SspMI	CTAG	1 cut(s)	576
SstI	GAGCTC	1 cut(s)	681
StyD4I	CCNGG	2 cut(s)	615, 777
StyI	CCWWGG	2 cut(s)	148, 575
TaaI	ACNGT	1 cut(s)	328
TaiI	ACGT	1 cut(s)	769
TaqI	TCGA	3 cut(s)	293, 313, 717
TasI	AATT	2 cut(s)	301, 361
TatI	WGTACW	3 cut(s)	129, 328, 609
TfiI	GAWTC	2 cut(s)	44, 178
TscAI	CASTG	2 cut(s)	469, 480
TseI	GCWGC	1 cut(s)	95
TspDTI	ATGAA	4 cut(s)	273, 285, 296, 698
TspGWI	ACGGA	2 cut(s)	152, 239
TspRI	CASTG	2 cut(s)	469, 480
Van91I	CCANNNNNTGG	1 cut(s)	804
XapI	RAATTY	2 cut(s)	301, 361
XceI	RCATGY	1 cut(s)	147
XmaJI	CCTAGG	1 cut(s)	575
XmnI	GAANNNNTTC	1 cut(s)	689
XspI	CTAG	1 cut(s)	576
ZrmI	AGTACT	2 cut(s)	131, 611
Zsp2I	ATGCAT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.