Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0007647

Physical Location & Seq

Genomic Coordinates Reverse (-)

12183265 .. 12186459

Gene Structure 3195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1148100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTATCTTCTGAGAAGACAATCTCAAAAACCAACCCCTGAGGATGATTCTGCACAAAAAGATGCAAAGGTCAAAGAACTCAGGGCAGCGCTTGGCCCCCTGTCTGGACGCAATTTGAAGTACTGCACCGATGGATGCCTTCGGAGATATTTGGAAGCTCGAAGCTGGAATCTTGAGAAGGCGAAGAAAATGGTTGAAGAGACACTGAAGTGGAGGGCAGCTTATAAGCCTGAAGAAACCCGTTGGCATGAAATAGCGCATGAAGGTGAGACTGGCAAAGTATTTAGAGCCAAGTTCCACGATCGACTTGGCAGGAGTGTGCTTATAATGAGGCCAGCACAGCAGAACACAAACTCGCCCGAAGATAATATCCGCCATTTAGTCTATCTTATAGAAAATGGTATCCTCAACCTTCCCGAAGGTCAAGAACAGATGTCATGGTTGGTAGACTTCACTGGATTCTCAATCAACACCAATGTCACTGTCAAGACAGCCCGGGATATTATTAACATTCTACAGAACCATTACCCCGAGAGGCTTGCGGTTGCATTTCTATATAACCCACCAAGAATTTTTCAGGCATTCTGGAAGGCTGTCAAGTACTTCCTGGATGCCAAGACCTTTCAGAAGGTGAAGTTTGTATACCCGAAAGGTAAAGAAAGTGTGGAGCTCATGAAGACATTCTTTGATGCTGAAAATCTTCCGAGCGAGTTTGGGGGACAAGCCACCCTAAAGTATAACCACGAGGAGTTTTCACGAATGATGGCGGAGGATGATGTGAAAACTGCCAAGTTCTGGGGATTTGAGGTGGCACCGGAGCCTCTCCCCGTTGCACCTGTGGCTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

283

Amino Acids

32.68

Weight (kDa)

8.99

Isoelectric Point (pI)

57.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	91 - 240	1.3e-35	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	104 - 249	1.4e-10	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36640 AT4G36640 AT4G36640
fragaria_vesca	FvH4_1g13330 FvH4_1g13330 FvH4_1g13330
malus_domestica	MD02G1148100.v1.1 MD15G1262300.v1.1
prunus_persica	Prupe.7G154300_v2.0.a1 Prupe.7G154300_v2.0.a1
pyrus_communis	pycom02g11680 pycom15g22920
rosa_chinensis	RchiOBHm_Chr2g0101611
rosa_laevigata	RLG00000017094
rosa_multiflora	Rmu_sc0006153.1_g000004
rosa_roxburghii	Rroxscaffold_2G00141150
rosa_rugosa	Rorug02G0101100 Rorug02G0101200 Rorug02G0101300
rosa_samantha	Rh2AG148400 Rh2BG153800 Rh2CG154200 Rh2DG154000
rosa_wichuraiana	Rw2G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	225, 326
AccB1I	GGYRCC	1 cut(s)	811
AccB7I	CCANNNNNTGG	1 cut(s)	795
AccI	GTMKAC	2 cut(s)	447, 642
AciI	CCGC	3 cut(s)	373, 542, 767
AcsI	RAATTY	1 cut(s)	570
AcuI	CTGAAG	2 cut(s)	227, 252
AfaI	GTAC	2 cut(s)	122, 602
AfeI	AGCGCT	1 cut(s)	90
AfiI	CCNNNNNNNGG	2 cut(s)	104, 795
AgsI	TTSAA	2 cut(s)	118, 197
AjnI	CCWGG	1 cut(s)	606
AleI	CACNNNNGTG	1 cut(s)	208
AluBI	AGCT	5 cut(s)	158, 165, 221, 670, 846
AluI	AGCT	5 cut(s)	158, 165, 221, 670, 846
Alw21I	GWGCWC	1 cut(s)	672
Alw26I	GTCTC	2 cut(s)	194, 263
Ama87I	CYCGRG	2 cut(s)	495, 530
Aor51HI	AGCGCT	1 cut(s)	90
AoxI	GGCC	2 cut(s)	94, 332
ApeKI	GCWGC	2 cut(s)	86, 218
ApoI	RAATTY	1 cut(s)	570
Asp700I	GAANNNNTTC	2 cut(s)	680, 699
AspLEI	GCGC	2 cut(s)	91, 259
AspS9I	GGNCC	1 cut(s)	95
AsuC2I	CCSGG	2 cut(s)	496, 497
AsuHPI	GGTGA	2 cut(s)	278, 643
AsuNHI	GCTAGC	1 cut(s)	842
AvaI	CYCGRG	2 cut(s)	495, 530
AxyI	CCTNAGG	1 cut(s)	39
BanI	GGYRCC	1 cut(s)	811
BanII	GRGCYC	1 cut(s)	672
BarI	GAAGNNNNNNTAC	2 cut(s)	626, 658
BauI	CACGAG	1 cut(s)	743
BbsI	GAAGAC	2 cut(s)	22, 683
Bbv12I	GWGCWC	1 cut(s)	672
BbvI	GCAGC	2 cut(s)	98, 230
BccI	CCATC	2 cut(s)	125, 757
BcgI	CGANNNNNNTGC	2 cut(s)	521, 555
BciT130I	CCWGG	1 cut(s)	608
BciVI	GTATCC	1 cut(s)	413
BcnI	CCSGG	2 cut(s)	496, 497
BcoDI	GTCTC	2 cut(s)	194, 263
BfaI	CTAG	1 cut(s)	843
BfmI	CTRYAG	1 cut(s)	515
BfoI	RGCGCY	1 cut(s)	92
BfuI	GTATCC	1 cut(s)	413
BisI	GCNGC	2 cut(s)	87, 219
BlsI	GCNGC	2 cut(s)	88, 220
BmcAI	AGTACT	2 cut(s)	122, 602
Bme1390I	CCNGG	3 cut(s)	496, 497, 608
BmeT110I	CYCGRG	2 cut(s)	495, 530
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	3 cut(s)	97, 813, 819
BmrFI	CCNGG	3 cut(s)	496, 497, 608
BmsI	GCATC	4 cut(s)	52, 125, 601, 679
BmtI	GCTAGC	1 cut(s)	846
BpiI	GAAGAC	2 cut(s)	22, 683
BpuEI	CTTGAG	1 cut(s)	194
BpuMI	CCSGG	2 cut(s)	496, 497
BsaJI	CCNNGG	1 cut(s)	495
BsaWI	WCCGGW	1 cut(s)	814
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 795
Bse1I	ACTGG	2 cut(s)	277, 460
Bse21I	CCTNAGG	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	608
BseDI	CCNNGG	1 cut(s)	495
BseGI	GGATG	4 cut(s)	49, 140, 616, 778
BseLI	CCNNNNNNNGG	2 cut(s)	104, 795
BseMII	CTCAG	2 cut(s)	30, 94
BseNI	ACTGG	2 cut(s)	277, 460
BseRI	GAGGAG	1 cut(s)	761
BseXI	GCAGC	2 cut(s)	98, 230
BsgI	GTGCAG	2 cut(s)	36, 109
Bsh1285I	CGRYCG	1 cut(s)	304
BshFI	GGCC	2 cut(s)	96, 334
BshNI	GGYRCC	1 cut(s)	811
BsiEI	CGRYCG	1 cut(s)	304
BsiHKAI	GWGCWC	1 cut(s)	672
BsiHKCI	CYCGRG	2 cut(s)	495, 530
BsiSI	CCGG	2 cut(s)	496, 815
BslFI	GGGAC	1 cut(s)	732
BslI	CCNNNNNNNGG	2 cut(s)	104, 795
BsmAI	GTCTC	2 cut(s)	194, 263
BsmFI	GGGAC	1 cut(s)	732
BsmI	GAATGC	1 cut(s)	581
BsnI	GGCC	2 cut(s)	96, 334
BsoBI	CYCGRG	2 cut(s)	495, 530
Bsp1286I	GDGCHC	1 cut(s)	672
Bsp143I	GATC	1 cut(s)	301
BspACI	CCGC	3 cut(s)	373, 542, 767
BspANI	GGCC	2 cut(s)	96, 334
BspCNI	CTCAG	2 cut(s)	31, 93
BspHI	TCATGA	1 cut(s)	672
BspLI	GGNNCC	3 cut(s)	97, 813, 819
BspOI	GCTAGC	1 cut(s)	846
BspT107I	GGYRCC	1 cut(s)	811
BsrI	ACTGG	2 cut(s)	277, 460
BssECI	CCNNGG	1 cut(s)	495
BssMI	GATC	1 cut(s)	301
BssNAI	GTATAC	1 cut(s)	643
BssSI	CACGAG	1 cut(s)	743
Bst1107I	GTATAC	1 cut(s)	643
Bst2BI	CACGAG	1 cut(s)	743
Bst2UI	CCWGG	1 cut(s)	608
Bst4CI	ACNGT	1 cut(s)	484
Bst6I	CTCTTC	1 cut(s)	192
BstC8I	GCNNGC	3 cut(s)	336, 540, 844
BstDEI	CTNAG	3 cut(s)	11, 39, 80
BstF5I	GGATG	4 cut(s)	49, 140, 616, 778
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	2 cut(s)	91, 259
BstKTI	GATC	1 cut(s)	304
BstMAI	GTCTC	2 cut(s)	194, 263
BstMBI	GATC	1 cut(s)	301
BstMCI	CGRYCG	1 cut(s)	304
BstMWI	GCNNNNNNNGC	2 cut(s)	340, 839
BstNI	CCWGG	1 cut(s)	608
BstSCI	CCNGG	3 cut(s)	494, 495, 606
BstSFI	CTRYAG	1 cut(s)	515
BstV1I	GCAGC	2 cut(s)	98, 230
BstV2I	GAAGAC	2 cut(s)	22, 683
BstZ17I	GTATAC	1 cut(s)	643
Bsu36I	CCTNAGG	1 cut(s)	39
BsuI	GTATCC	1 cut(s)	413
BsuRI	GGCC	2 cut(s)	96, 334
BtsCI	GGATG	4 cut(s)	49, 140, 616, 778
BtsIMutI	CAGTG	3 cut(s)	203, 453, 480
Cac8I	GCNNGC	3 cut(s)	336, 540, 844
CciI	TCATGA	1 cut(s)	672
CfoI	GCGC	2 cut(s)	91, 259
Cfr13I	GGNCC	1 cut(s)	95
Cfr9I	CCCGGG	1 cut(s)	495
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	2 cut(s)	121, 601
CviAII	CATG	4 cut(s)	248, 260, 438, 673
CviQI	GTAC	2 cut(s)	121, 601
DdeI	CTNAG	3 cut(s)	11, 39, 80
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
EciI	GGCGGA	2 cut(s)	362, 782
Ecl136II	GAGCTC	1 cut(s)	670
Eco24I	GRGCYC	1 cut(s)	672
Eco47III	AGCGCT	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	670
Eco57I	CTGAAG	2 cut(s)	227, 252
Eco81I	CCTNAGG	1 cut(s)	39
Eco88I	CYCGRG	2 cut(s)	495, 530
EcoICRI	GAGCTC	1 cut(s)	670
EcoRII	CCWGG	1 cut(s)	606
EcoT38I	GRGCYC	1 cut(s)	672
FaeI	CATG	4 cut(s)	251, 263, 441, 676
FalI	AAGNNNNNCTT	2 cut(s)	668, 700
FaqI	GGGAC	1 cut(s)	732
FatI	CATG	4 cut(s)	247, 259, 437, 672
FblI	GTMKAC	2 cut(s)	447, 642
Fnu4HI	GCNGC	2 cut(s)	87, 219
FokI	GGATG	4 cut(s)	56, 147, 623, 785
FriOI	GRGCYC	1 cut(s)	672
Fsp4HI	GCNGC	2 cut(s)	87, 219
FspBI	CTAG	1 cut(s)	843
GlaI	GCGC	2 cut(s)	90, 258
GluI	GCNGC	2 cut(s)	87, 219
HaeII	RGCGCY	1 cut(s)	92
HaeIII	GGCC	2 cut(s)	96, 334
HapII	CCGG	2 cut(s)	496, 815
HgaI	GACGC	1 cut(s)	117
HhaI	GCGC	2 cut(s)	91, 259
Hin1II	CATG	4 cut(s)	251, 263, 441, 676
Hin6I	GCGC	2 cut(s)	89, 257
HinP1I	GCGC	2 cut(s)	89, 257
HinfI	GANTC	3 cut(s)	47, 169, 459
HpaII	CCGG	2 cut(s)	496, 815
HphI	GGTGA	2 cut(s)	278, 643
Hpy166II	GTNNAC	2 cut(s)	448, 643
Hpy188I	TCNGA	4 cut(s)	12, 144, 627, 705
Hpy188III	TCNNGA	8 cut(s)	105, 173, 416, 425, 487, 586, 673, 756
Hpy8I	GTNNAC	2 cut(s)	448, 643
HpyAV	CCTTC	7 cut(s)	149, 172, 257, 413, 422, 583, 622
HpyCH4III	ACNGT	1 cut(s)	484
HpyCH4V	TGCA	5 cut(s)	53, 65, 126, 548, 833
HpyF10VI	GCNNNNNNNGC	2 cut(s)	340, 839
HpyF3I	CTNAG	3 cut(s)	11, 39, 80
Hsp92II	CATG	4 cut(s)	251, 263, 441, 676
HspAI	GCGC	2 cut(s)	89, 257
Kzo9I	GATC	1 cut(s)	301
LmnI	GCTCC	2 cut(s)	667, 817
Lsp1109I	GCAGC	2 cut(s)	98, 230
LweI	GCATC	4 cut(s)	52, 125, 601, 679
MaeI	CTAG	1 cut(s)	843
MaeIII	GTNAC	1 cut(s)	478
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MboII	GAAGA	7 cut(s)	27, 196, 209, 245, 374, 688, 692
MhlI	GDGCHC	1 cut(s)	672
MluCI	AATT	2 cut(s)	112, 570
MnlI	CCTC	9 cut(s)	34, 207, 324, 416, 528, 739, 763, 799, 831
MroXI	GAANNNNTTC	2 cut(s)	680, 699
MseI	TTAA	1 cut(s)	507
MslI	CAYNNNNRTG	2 cut(s)	208, 264
MspI	CCGG	2 cut(s)	496, 815
MspR9I	CCNGG	3 cut(s)	496, 497, 608
Mva1269I	GAATGC	1 cut(s)	581
MvaI	CCWGG	1 cut(s)	608
MwoI	GCNNNNNNNGC	2 cut(s)	340, 839
NciI	CCSGG	2 cut(s)	496, 497
NdeII	GATC	1 cut(s)	301
NheI	GCTAGC	1 cut(s)	842
NlaIII	CATG	4 cut(s)	251, 263, 441, 676
NlaIV	GGNNCC	3 cut(s)	97, 813, 819
NmuCI	GTSAC	1 cut(s)	478
OliI	CACNNNNGTG	1 cut(s)	208
PagI	TCATGA	1 cut(s)	672
PctI	GAATGC	1 cut(s)	581
PdmI	GAANNNNTTC	2 cut(s)	680, 699
PfeI	GAWTC	3 cut(s)	47, 169, 459
PflMI	CCANNNNNTGG	1 cut(s)	795
PfoI	TCCNGGA	1 cut(s)	606
PkrI	GCNGC	2 cut(s)	88, 220
Ple19I	CGATCG	1 cut(s)	304
PsiI	TTATAA	2 cut(s)	225, 326
Psp124BI	GAGCTC	1 cut(s)	672
Psp6I	CCWGG	1 cut(s)	606
PspGI	CCWGG	1 cut(s)	606
PspN4I	GGNNCC	3 cut(s)	97, 813, 819
PspPI	GGNCC	1 cut(s)	95
PvuI	CGATCG	1 cut(s)	304
RsaI	GTAC	2 cut(s)	122, 602
RsaNI	GTAC	2 cut(s)	121, 601
RseI	CAYNNNNRTG	2 cut(s)	208, 264
SacI	GAGCTC	1 cut(s)	672
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	2 cut(s)	87, 219
Sau3AI	GATC	1 cut(s)	301
Sau96I	GGNCC	1 cut(s)	95
ScaI	AGTACT	2 cut(s)	122, 602
ScrFI	CCNGG	3 cut(s)	496, 497, 608
SduI	GDGCHC	1 cut(s)	672
SfaNI	GCATC	4 cut(s)	52, 125, 601, 679
SfcI	CTRYAG	1 cut(s)	515
SmaI	CCCGGG	1 cut(s)	497
SmiMI	CAYNNNNRTG	2 cut(s)	208, 264
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	2 cut(s)	112, 570
SsiI	CCGC	3 cut(s)	373, 542, 767
SspMI	CTAG	1 cut(s)	843
SstI	GAGCTC	1 cut(s)	672
StyD4I	CCNGG	3 cut(s)	494, 495, 606
TaaI	ACNGT	1 cut(s)	484
TaqI	TCGA	2 cut(s)	160, 304
TasI	AATT	2 cut(s)	112, 570
TatI	WGTACW	2 cut(s)	120, 600
TfiI	GAWTC	3 cut(s)	47, 169, 459
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	3 cut(s)	210, 460, 487
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	2 cut(s)	86, 218
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	3 cut(s)	264, 276, 689
TspMI	CCCGGG	1 cut(s)	495
TspRI	CASTG	3 cut(s)	210, 460, 487
Van91I	CCANNNNNTGG	1 cut(s)	795
XapI	RAATTY	1 cut(s)	570
XcmI	CCANNNNNNNNNTGG	1 cut(s)	305
XmaI	CCCGGG	1 cut(s)	495
XmiI	GTMKAC	2 cut(s)	447, 642
XmnI	GAANNNNTTC	2 cut(s)	680, 699
XspI	CTAG	1 cut(s)	843
ZrmI	AGTACT	2 cut(s)	122, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.