Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0007647

Physical Location & Seq

Genomic Coordinates Reverse (-)

7307811 .. 7310662

Gene Structure 2852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g13330.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGTATCTTCTGAGAAGAAAATCTCAAAGCCCTGTGGAGGATGAGTCTGCACAAAAGGAGGCACAGAATGAAGCAAAGATCAAAGAACTCAGGGCTGCACTTGGCCCGTTATCTGGGCGTAGTTTGCAGTACTGCACGGATGCATGCCTTGGGAGATATCTGGAAGCAAGGAACTGGAACCTCGAGAAGGCGAAGAAAATGATAGAGGAGACACTCAGGTGGAGGGCTAGTTATAAGCCTGAAGAAATCCGTTGGCATGAAGTAGCACATGAAGGTGAGACCGGCAAAGTGTCGAGAGCAAACTTTCATGATCGACTTGGGAGGACTGTACTTATAATGAGGCCAGCAAAGCAGAACACAAATTCACCGGAAGGCAATGTTCGCCATTTAGTCTATTGTATAGAAAATGGTATCCTCAACCTCCGTGAAGGTCAAGAACAAATGTCTTGGTTGATTGACTTCACTGGCTTCTCATTGAACACCAATGTTTCCGTCAAGACAGCTCGTGACTGTATCAACATTCTGCAGAACCATTACCCCGAGAGGCTTGCTGTTGCATTTCTTTACAACCCACCTAGGATTTTTCAGGCATTCTGGAAGGCTGTGAAGTACTTCCTGGATGCCAAGACATTTCAGAAAGTGAAGTTTGTTTACCCCAAAAGTAAGGAAAGCGTGGAGCTCATGAAGACTTTCTTTGATGTTGAAAATCTTCCAGTCGAGTTTGGGGGAAAGACCACCCTAAAGTACGATCACGAGGAGTTTTCACGTATGATGGCCCAGGATGATGTGAAAACTGCCAAGCTATGGGGACTTGATGAGAAGCCATGCAACATAGCAAATGGACATATGGGAGCAGAGGTGGCACCAGAGCCTATTGCAACCGCAGCTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

298

Amino Acids

34.15

Weight (kDa)

8.66

Isoelectric Point (pI)

55.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_N	PF03765	42 - 70	5.5e-07	CRAL/TRIO, N-terminal domain
CRAL_TRIO	PF00650	96 - 243	1.9e-34	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	110 - 252	1.6e-09	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36640 AT4G36640 AT4G36640
fragaria_vesca	FvH4_1g13330 FvH4_1g13330 FvH4_1g13330
malus_domestica	MD02G1148100.v1.1 MD15G1262300.v1.1
prunus_persica	Prupe.7G154300_v2.0.a1 Prupe.7G154300_v2.0.a1
pyrus_communis	pycom02g11680 pycom15g22920
rosa_chinensis	RchiOBHm_Chr2g0101611
rosa_laevigata	RLG00000017094
rosa_multiflora	Rmu_sc0006153.1_g000004
rosa_roxburghii	Rroxscaffold_2G00141150
rosa_rugosa	Rorug02G0101100 Rorug02G0101200 Rorug02G0101300
rosa_samantha	Rh2AG148400 Rh2BG153800 Rh2CG154200 Rh2DG154000
rosa_wichuraiana	Rw2G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	234, 335
AccB1I	GGYRCC	1 cut(s)	862
AccB7I	CCANNNNNTGG	1 cut(s)	804
AciI	CCGC	1 cut(s)	882
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	4 cut(s)	131, 330, 611, 746
AfiI	CCNNNNNNNGG	4 cut(s)	37, 113, 187, 804
AgsI	TTSAA	2 cut(s)	478, 704
AjnI	CCWGG	2 cut(s)	615, 777
AleI	CACNNNNGTG	1 cut(s)	217
AluBI	AGCT	5 cut(s)	503, 679, 802, 887, 891
AluI	AGCT	5 cut(s)	503, 679, 802, 887, 891
Alw21I	GWGCWC	1 cut(s)	681
Alw26I	GTCTC	2 cut(s)	203, 272
Ama87I	CYCGRG	2 cut(s)	182, 539
AoxI	GGCC	3 cut(s)	103, 341, 774
ApeKI	GCWGC	2 cut(s)	95, 884
ApoI	RAATTY	1 cut(s)	361
Asp700I	GAANNNNTTC	3 cut(s)	611, 689, 708
AspA2I	CCTAGG	1 cut(s)	575
AspS9I	GGNCC	2 cut(s)	104, 775
AsuHPI	GGTGA	2 cut(s)	287, 357
AsuNHI	GCTAGC	1 cut(s)	887
AvaI	CYCGRG	2 cut(s)	182, 539
AvrII	CCTAGG	1 cut(s)	575
BanI	GGYRCC	1 cut(s)	862
BanII	GRGCYC	1 cut(s)	681
BarI	GAAGNNNNNNTAC	2 cut(s)	635, 667
BauI	CACGAG	2 cut(s)	504, 752
BbsI	GAAGAC	1 cut(s)	692
Bbv12I	GWGCWC	1 cut(s)	681
BbvI	GCAGC	1 cut(s)	82
BccI	CCATC	1 cut(s)	766
BcgI	CGANNNNNNTGC	2 cut(s)	530, 564
BciT130I	CCWGG	2 cut(s)	617, 779
BciVI	GTATCC	1 cut(s)	422
BcoDI	GTCTC	2 cut(s)	203, 272
BfaI	CTAG	3 cut(s)	228, 576, 888
BfmI	CTRYAG	1 cut(s)	524
BfuI	GTATCC	1 cut(s)	422
BisI	GCNGC	2 cut(s)	96, 885
BlnI	CCTAGG	1 cut(s)	575
BlsI	GCNGC	2 cut(s)	97, 886
BmcAI	AGTACT	2 cut(s)	131, 611
Bme1390I	CCNGG	2 cut(s)	617, 779
BmeT110I	CYCGRG	2 cut(s)	182, 539
BmgT120I	GGNCC	2 cut(s)	104, 775
BmiI	GGNNCC	2 cut(s)	179, 864
BmrFI	CCNGG	2 cut(s)	617, 779
BmsI	GCATC	2 cut(s)	130, 610
BmtI	GCTAGC	1 cut(s)	891
BpiI	GAAGAC	1 cut(s)	692
BsaAI	YACGTR	1 cut(s)	767
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	3 cut(s)	148, 575, 777
BsaWI	WCCGGW	1 cut(s)	367
BsaXI	ACNNNNNCTCC	6 cut(s)	29, 59, 214, 244, 843, 873
Bsc4I	CCNNNNNNNGG	4 cut(s)	37, 113, 187, 804
Bse118I	RCCGGY	1 cut(s)	281
Bse1I	ACTGG	3 cut(s)	179, 469, 713
Bse3DI	GCAATG	1 cut(s)	382
BseBI	CCWGG	2 cut(s)	617, 779
BseDI	CCNNGG	3 cut(s)	148, 575, 777
BseGI	GGATG	4 cut(s)	46, 145, 625, 787
BseLI	CCNNNNNNNGG	4 cut(s)	37, 113, 187, 804
BseMI	GCAATG	1 cut(s)	382
BseMII	CTCAG	2 cut(s)	103, 229
BseNI	ACTGG	3 cut(s)	179, 469, 713
BseRI	GAGGAG	2 cut(s)	221, 770
BseXI	GCAGC	1 cut(s)	82
BsgI	GTGCAG	3 cut(s)	33, 81, 118
BshFI	GGCC	3 cut(s)	105, 343, 776
BshNI	GGYRCC	1 cut(s)	862
BsiHKAI	GWGCWC	1 cut(s)	681
BsiHKCI	CYCGRG	2 cut(s)	182, 539
BsiSI	CCGG	2 cut(s)	282, 368
BslFI	GGGAC	1 cut(s)	822
BslI	CCNNNNNNNGG	4 cut(s)	37, 113, 187, 804
BsmAI	GTCTC	2 cut(s)	203, 272
BsmFI	GGGAC	1 cut(s)	822
BsmI	GAATGC	1 cut(s)	590
BsnI	GGCC	3 cut(s)	105, 343, 776
Bso31I	GGTCTC	1 cut(s)	272
BsoBI	CYCGRG	2 cut(s)	182, 539
Bsp1286I	GDGCHC	1 cut(s)	681
Bsp143I	GATC	3 cut(s)	78, 310, 748
BspACI	CCGC	1 cut(s)	882
BspANI	GGCC	3 cut(s)	105, 343, 776
BspCNI	CTCAG	2 cut(s)	102, 228
BspHI	TCATGA	2 cut(s)	307, 681
BspLI	GGNNCC	2 cut(s)	179, 864
BspMAI	CTGCAG	1 cut(s)	528
BspOI	GCTAGC	1 cut(s)	891
BspT107I	GGYRCC	1 cut(s)	862
BspTNI	GGTCTC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	382
BsrFI	RCCGGY	1 cut(s)	281
BsrI	ACTGG	3 cut(s)	179, 469, 713
BssAI	RCCGGY	1 cut(s)	281
BssECI	CCNNGG	3 cut(s)	148, 575, 777
BssMI	GATC	3 cut(s)	78, 310, 748
BssSI	CACGAG	2 cut(s)	504, 752
BssT1I	CCWWGG	2 cut(s)	148, 575
Bst2BI	CACGAG	2 cut(s)	504, 752
Bst2UI	CCWGG	2 cut(s)	617, 779
Bst4CI	ACNGT	2 cut(s)	328, 512
BstBAI	YACGTR	1 cut(s)	767
BstC8I	GCNNGC	4 cut(s)	145, 345, 549, 889
BstDEI	CTNAG	3 cut(s)	11, 89, 215
BstENI	CCTNNNNNAGG	1 cut(s)	185
BstF5I	GGATG	4 cut(s)	46, 145, 625, 787
BstKTI	GATC	3 cut(s)	81, 313, 751
BstMAI	GTCTC	2 cut(s)	203, 272
BstMBI	GATC	3 cut(s)	78, 310, 748
BstMWI	GCNNNNNNNGC	5 cut(s)	124, 349, 381, 860, 884
BstNI	CCWGG	2 cut(s)	617, 779
BstNSI	RCATGY	1 cut(s)	147
BstSCI	CCNGG	2 cut(s)	615, 777
BstSFI	CTRYAG	1 cut(s)	524
BstV1I	GCAGC	1 cut(s)	82
BstV2I	GAAGAC	1 cut(s)	692
BsuI	GTATCC	1 cut(s)	422
BsuRI	GGCC	3 cut(s)	105, 343, 776
BtsCI	GGATG	4 cut(s)	46, 145, 625, 787
BtsIMutI	CAGTG	1 cut(s)	462
Cac8I	GCNNGC	4 cut(s)	145, 345, 549, 889
CciI	TCATGA	2 cut(s)	307, 681
Cfr10I	RCCGGY	1 cut(s)	281
Cfr13I	GGNCC	2 cut(s)	104, 775
Csp6I	GTAC	4 cut(s)	130, 329, 610, 745
CviAII	CATG	6 cut(s)	144, 257, 269, 308, 682, 825
CviQI	GTAC	4 cut(s)	130, 329, 610, 745
DdeI	CTNAG	3 cut(s)	11, 89, 215
DpnI	GATC	3 cut(s)	80, 312, 750
DpnII	GATC	3 cut(s)	78, 310, 748
Ecl136II	GAGCTC	1 cut(s)	679
Eco130I	CCWWGG	2 cut(s)	148, 575
Eco24I	GRGCYC	1 cut(s)	681
Eco31I	GGTCTC	1 cut(s)	272
Eco32I	GATATC	1 cut(s)	158
Eco53kI	GAGCTC	1 cut(s)	679
Eco57I	CTGAAG	1 cut(s)	261
Eco88I	CYCGRG	2 cut(s)	182, 539
EcoICRI	GAGCTC	1 cut(s)	679
EcoNI	CCTNNNNNAGG	1 cut(s)	185
EcoRII	CCWGG	2 cut(s)	615, 777
EcoRV	GATATC	1 cut(s)	158
EcoT14I	CCWWGG	2 cut(s)	148, 575
EcoT22I	ATGCAT	1 cut(s)	145
EcoT38I	GRGCYC	1 cut(s)	681
ErhI	CCWWGG	2 cut(s)	148, 575
FaeI	CATG	6 cut(s)	147, 260, 272, 311, 685, 828
FalI	AAGNNNNNCTT	2 cut(s)	677, 709
FaqI	GGGAC	1 cut(s)	822
FatI	CATG	6 cut(s)	143, 256, 268, 307, 681, 824
FauNDI	CATATG	1 cut(s)	846
Fnu4HI	GCNGC	2 cut(s)	96, 885
FokI	GGATG	4 cut(s)	53, 152, 632, 794
FriOI	GRGCYC	1 cut(s)	681
Fsp4HI	GCNGC	2 cut(s)	96, 885
FspBI	CTAG	3 cut(s)	228, 576, 888
GluI	GCNGC	2 cut(s)	96, 885
HaeIII	GGCC	3 cut(s)	105, 343, 776
HapII	CCGG	2 cut(s)	282, 368
Hin1II	CATG	6 cut(s)	147, 260, 272, 311, 685, 828
HinfI	GANTC	1 cut(s)	44
HpaII	CCGG	2 cut(s)	282, 368
HphI	GGTGA	2 cut(s)	287, 357
Hpy166II	GTNNAC	1 cut(s)	652
Hpy188I	TCNGA	2 cut(s)	12, 636
Hpy8I	GTNNAC	1 cut(s)	652
HpyAV	CCTTC	5 cut(s)	181, 266, 365, 422, 592
HpyCH4III	ACNGT	2 cut(s)	328, 512
HpyCH4IV	ACGT	1 cut(s)	766
HpyCH4V	TGCA	9 cut(s)	50, 98, 127, 135, 143, 526, 557, 828, 878
HpyF10VI	GCNNNNNNNGC	5 cut(s)	124, 349, 381, 860, 884
HpyF3I	CTNAG	3 cut(s)	11, 89, 215
HpySE526I	ACGT	1 cut(s)	766
Hsp92II	CATG	6 cut(s)	147, 260, 272, 311, 685, 828
Kzo9I	GATC	3 cut(s)	78, 310, 748
LmnI	GCTCC	2 cut(s)	676, 851
Lsp1109I	GCAGC	1 cut(s)	82
LweI	GCATC	2 cut(s)	130, 610
MaeI	CTAG	3 cut(s)	228, 576, 888
MaeII	ACGT	1 cut(s)	766
MaeIII	GTNAC	1 cut(s)	506
MalI	GATC	3 cut(s)	80, 312, 750
MboI	GATC	3 cut(s)	78, 310, 748
MboII	GAAGA	5 cut(s)	27, 205, 254, 697, 701
MhlI	GDGCHC	1 cut(s)	681
MluCI	AATT	1 cut(s)	361
MlyI	GAGTC	1 cut(s)	53
Mph1103I	ATGCAT	1 cut(s)	145
MroXI	GAANNNNTTC	3 cut(s)	611, 689, 708
MslI	CAYNNNNRTG	2 cut(s)	217, 273
MspI	CCGG	2 cut(s)	282, 368
MspR9I	CCNGG	2 cut(s)	617, 779
Mva1269I	GAATGC	1 cut(s)	590
MvaI	CCWGG	2 cut(s)	617, 779
MwoI	GCNNNNNNNGC	5 cut(s)	124, 349, 381, 860, 884
NdeI	CATATG	1 cut(s)	846
NdeII	GATC	3 cut(s)	78, 310, 748
NheI	GCTAGC	1 cut(s)	887
NlaIII	CATG	6 cut(s)	147, 260, 272, 311, 685, 828
NlaIV	GGNNCC	2 cut(s)	179, 864
NmuCI	GTSAC	1 cut(s)	506
NsiI	ATGCAT	1 cut(s)	145
NspI	RCATGY	1 cut(s)	147
OliI	CACNNNNGTG	1 cut(s)	217
PaeI	GCATGC	1 cut(s)	147
PaeR7I	CTCGAG	1 cut(s)	182
PagI	TCATGA	2 cut(s)	307, 681
PctI	GAATGC	1 cut(s)	590
PdmI	GAANNNNTTC	3 cut(s)	611, 689, 708
PflMI	CCANNNNNTGG	1 cut(s)	804
PfoI	TCCNGGA	1 cut(s)	615
PkrI	GCNGC	2 cut(s)	97, 886
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
Ppu21I	YACGTR	1 cut(s)	767
PsiI	TTATAA	2 cut(s)	234, 335
Psp124BI	GAGCTC	1 cut(s)	681
Psp6I	CCWGG	2 cut(s)	615, 777
PspGI	CCWGG	2 cut(s)	615, 777
PspN4I	GGNNCC	2 cut(s)	179, 864
PspPI	GGNCC	2 cut(s)	104, 775
PstI	CTGCAG	1 cut(s)	528
RsaI	GTAC	4 cut(s)	131, 330, 611, 746
RsaNI	GTAC	4 cut(s)	130, 329, 610, 745
RseI	CAYNNNNRTG	2 cut(s)	217, 273
SacI	GAGCTC	1 cut(s)	681
SatI	GCNGC	2 cut(s)	96, 885
Sau3AI	GATC	3 cut(s)	78, 310, 748
Sau96I	GGNCC	2 cut(s)	104, 775
ScaI	AGTACT	2 cut(s)	131, 611
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	2 cut(s)	617, 779
SduI	GDGCHC	1 cut(s)	681
SfaNI	GCATC	2 cut(s)	130, 610
SfcI	CTRYAG	1 cut(s)	524
Sfr274I	CTCGAG	1 cut(s)	182
SlaI	CTCGAG	1 cut(s)	182
SmiMI	CAYNNNNRTG	2 cut(s)	217, 273
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
SphI	GCATGC	1 cut(s)	147
Sse9I	AATT	1 cut(s)	361
SsiI	CCGC	1 cut(s)	882
SspMI	CTAG	3 cut(s)	228, 576, 888
SstI	GAGCTC	1 cut(s)	681
StyD4I	CCNGG	2 cut(s)	615, 777
StyI	CCWWGG	2 cut(s)	148, 575
TaaI	ACNGT	2 cut(s)	328, 512
TaiI	ACGT	1 cut(s)	769
TaqI	TCGA	4 cut(s)	183, 293, 313, 717
TasI	AATT	1 cut(s)	361
TatI	WGTACW	3 cut(s)	129, 328, 609
TscAI	CASTG	1 cut(s)	469
TseFI	GTSAC	1 cut(s)	506
TseI	GCWGC	2 cut(s)	95, 884
Tsp45I	GTSAC	1 cut(s)	506
TspDTI	ATGAA	5 cut(s)	84, 273, 285, 296, 698
TspGWI	ACGGA	4 cut(s)	152, 239, 413, 481
TspRI	CASTG	1 cut(s)	469
Van91I	CCANNNNNTGG	1 cut(s)	804
XagI	CCTNNNNNAGG	1 cut(s)	185
XapI	RAATTY	1 cut(s)	361
XceI	RCATGY	1 cut(s)	147
XhoI	CTCGAG	1 cut(s)	182
XmaJI	CCTAGG	1 cut(s)	575
XmnI	GAANNNNTTC	3 cut(s)	611, 689, 708
XspI	CTAG	3 cut(s)	228, 576, 888
ZrmI	AGTACT	2 cut(s)	131, 611
Zsp2I	ATGCAT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.