Prupe.7G154300_v2.0.a1

CRAL-TRIO domain-containing protein C23B6.04c-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0007647
Physical Location & Seq
Forward (+)
16403821 .. 16407712
3892 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G154300.1

Sequence Viewer

Length: 891 bp
ATGTATCTTCTGAGAAGACAAGCACAAAAACCATCCCCAGAGGATGATTCTGCACAAAAAGATGCAAAGGTCAAAGAACTTAGGGCTGCACTTGGCCCCCTGTCTGGACGTAATCTGAAGTATTGCACTGATGCATGCCTTCGGAGATATTTGGAAGCTCGGAGCTGGAATCTTGATAAGGCGAAGAAAATGGTGGAAGAGACACTCAGGTGGAGGGCAACTTATAAGCCTGAAGAAACTCGTTGGCATGAAATAGCACATGAAGGTGAGACTGGAAAAGTGTCAAGAGCAAATTTCCATGATAGACTTGGGAGGACTGTGCTTATAATGAGGCCAGCAATGCAGAACACAAACTCACCTGAAGGTAATATCCGCCATTTAGTCTATCTGATAGAAAATGGTATCCTCAACCTTCCTGAAGGTCAAGAACAAATGTCGTGGTTGGTTGACTTCTCTGGATTCTCGTTGAACACCAATGTCTCGGTCAAGACAGCCCGTGATATTATTTACATTCTACAGAACCATTACCCCGAGAGGCTTGCGGTTGCATTTCTTTATAACCCACCAAGGATTTTTCAGGCGTTCTGGAAGGCTGTCAAGTACTTCCTGGATCCCAAGACATTTCAGAAGGTGAAGTTTGTATACCCCAAAGGTAAAGAAAGTGTAGAGCTCATGAAGACATTCTTTGATGTTGAAAATCTTCCAAGCGAGTTCGGGGGTCAAGCCACCCTAAAGTACGACCATGAGGAGTTTTCACGAATGATGGCTGAGGATGATGTGAAAACTGCCAAGTTCTGGGGATTTGATGAGAAGCCTTGCCGCATAAAAAATGGGCTTTCGGGAGCAGAGGTGGTGCCGGAGCCCCTCCCCATTGCACCTATAGCTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

297

Amino Acids

34.19

Weight (kDa)

8.91

Isoelectric Point (pI)

53.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 225, 326, 558
AccB1I GGYRCC 1 cut(s) 853
AccB7I CCANNNNNTGG 1 cut(s) 795
AccI GTMKAC 1 cut(s) 642
AciI CCGC 3 cut(s) 373, 542, 820
AclWI GGATC 2 cut(s) 605, 618
AcsI RAATTY 1 cut(s) 292
AcuI CTGAAG 4 cut(s) 137, 252, 381, 438
AfaI GTAC 2 cut(s) 602, 737
AfiI CCNNNNNNNGG 2 cut(s) 104, 795
AgsI TTSAA 2 cut(s) 469, 695
AjnI CCWGG 1 cut(s) 606
AleI CACNNNNGTG 1 cut(s) 208
AluBI AGCT 5 cut(s) 158, 165, 670, 884, 888
AluI AGCT 5 cut(s) 158, 165, 670, 884, 888
Alw21I GWGCWC 1 cut(s) 672
Alw26I GTCTC 3 cut(s) 194, 263, 484
AlwI GGATC 2 cut(s) 605, 618
Ama87I CYCGRG 1 cut(s) 530
AoxI GGCC 2 cut(s) 94, 332
ApeKI GCWGC 1 cut(s) 86
ApoI RAATTY 1 cut(s) 292
Asp700I GAANNNNTTC 2 cut(s) 680, 699
AspS9I GGNCC 1 cut(s) 95
AsuHPI GGTGA 3 cut(s) 278, 348, 643
AsuNHI GCTAGC 1 cut(s) 884
AvaI CYCGRG 1 cut(s) 530
BamHI GGATCC 1 cut(s) 610
BanI GGYRCC 1 cut(s) 853
BanII GRGCYC 2 cut(s) 672, 864
BarI GAAGNNNNNNTAC 2 cut(s) 626, 658
BbsI GAAGAC 2 cut(s) 22, 683
Bbv12I GWGCWC 1 cut(s) 672
BbvCI CCTCAGC 1 cut(s) 768
BbvI GCAGC 1 cut(s) 73
BccI CCATC 2 cut(s) 40, 757
BcgI CGANNNNNNTGC 2 cut(s) 521, 555
BciT130I CCWGG 1 cut(s) 608
BciVI GTATCC 1 cut(s) 413
BcoDI GTCTC 3 cut(s) 194, 263, 484
BfaI CTAG 1 cut(s) 885
BfmI CTRYAG 2 cut(s) 515, 879
BfuI GTATCC 1 cut(s) 413
BisI GCNGC 2 cut(s) 87, 820
BlsI GCNGC 2 cut(s) 88, 821
BmcAI AGTACT 1 cut(s) 602
Bme1390I CCNGG 1 cut(s) 608
BmeT110I CYCGRG 1 cut(s) 530
BmgT120I GGNCC 1 cut(s) 95
BmiI GGNNCC 4 cut(s) 97, 612, 855, 861
BmrFI CCNGG 1 cut(s) 608
BmsI GCATC 2 cut(s) 52, 121
BmtI GCTAGC 1 cut(s) 888
BpiI GAAGAC 2 cut(s) 22, 683
Bpu10I CCTNAGC 1 cut(s) 768
BsaJI CCNNGG 1 cut(s) 566
BsaXI ACNNNNNCTCC 2 cut(s) 834, 864
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 795
Bse1I ACTGG 1 cut(s) 277
Bse3DI GCAATG 2 cut(s) 345, 870
BseBI CCWGG 1 cut(s) 608
BseDI CCNNGG 1 cut(s) 566
BseGI GGATG 3 cut(s) 32, 49, 778
BseLI CCNNNNNNNGG 2 cut(s) 104, 795
BseMI GCAATG 2 cut(s) 345, 870
BseMII CTCAG 2 cut(s) 220, 759
BseNI ACTGG 1 cut(s) 277
BseRI GAGGAG 1 cut(s) 761
BseXI GCAGC 1 cut(s) 73
BsgI GTGCAG 2 cut(s) 36, 72
BshFI GGCC 2 cut(s) 96, 334
BshNI GGYRCC 1 cut(s) 853
BsiHKAI GWGCWC 1 cut(s) 672
BsiHKCI CYCGRG 1 cut(s) 530
BsiSI CCGG 1 cut(s) 857
BslI CCNNNNNNNGG 2 cut(s) 104, 795
BsmAI GTCTC 3 cut(s) 194, 263, 484
BsnI GGCC 2 cut(s) 96, 334
BsoBI CYCGRG 1 cut(s) 530
Bsp1286I GDGCHC 2 cut(s) 672, 864
Bsp143I GATC 1 cut(s) 610
BspACI CCGC 3 cut(s) 373, 542, 820
BspANI GGCC 2 cut(s) 96, 334
BspCNI CTCAG 2 cut(s) 219, 760
BspHI TCATGA 1 cut(s) 672
BspLI GGNNCC 4 cut(s) 97, 612, 855, 861
BspOI GCTAGC 1 cut(s) 888
BspPI GGATC 2 cut(s) 605, 618
BspT107I GGYRCC 1 cut(s) 853
BsrDI GCAATG 2 cut(s) 345, 870
BsrI ACTGG 1 cut(s) 277
BssECI CCNNGG 1 cut(s) 566
BssMI GATC 1 cut(s) 610
BssNAI GTATAC 1 cut(s) 643
BssT1I CCWWGG 1 cut(s) 566
Bst1107I GTATAC 1 cut(s) 643
Bst2UI CCWGG 1 cut(s) 608
Bst4CI ACNGT 1 cut(s) 319
Bst6I CTCTTC 1 cut(s) 192
BstC8I GCNNGC 4 cut(s) 136, 336, 540, 886
BstDEI CTNAG 4 cut(s) 11, 80, 206, 768
BstF5I GGATG 3 cut(s) 32, 49, 778
BstKTI GATC 1 cut(s) 613
BstMAI GTCTC 3 cut(s) 194, 263, 484
BstMBI GATC 1 cut(s) 610
BstMWI GCNNNNNNNGC 2 cut(s) 340, 881
BstNI CCWGG 1 cut(s) 608
BstNSI RCATGY 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 606
BstSFI CTRYAG 2 cut(s) 515, 879
BstV1I GCAGC 1 cut(s) 73
BstV2I GAAGAC 2 cut(s) 22, 683
BstX2I RGATCY 1 cut(s) 610
BstYI RGATCY 1 cut(s) 610
BstZ17I GTATAC 1 cut(s) 643
BsuI GTATCC 1 cut(s) 413
BsuRI GGCC 2 cut(s) 96, 334
BtsCI GGATG 3 cut(s) 32, 49, 778
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 4 cut(s) 136, 336, 540, 886
CciI TCATGA 1 cut(s) 672
Cfr13I GGNCC 1 cut(s) 95
Csp6I GTAC 2 cut(s) 601, 736
CspCI CAANNNNNGTGG 2 cut(s) 419, 454
CviAII CATG 6 cut(s) 135, 248, 260, 299, 673, 743
CviQI GTAC 2 cut(s) 601, 736
DdeI CTNAG 4 cut(s) 11, 80, 206, 768
DpnI GATC 1 cut(s) 612
DpnII GATC 1 cut(s) 610
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
EciI GGCGGA 1 cut(s) 362
Ecl136II GAGCTC 1 cut(s) 670
Eco130I CCWWGG 1 cut(s) 566
Eco24I GRGCYC 2 cut(s) 672, 864
Eco53kI GAGCTC 1 cut(s) 670
Eco57I CTGAAG 4 cut(s) 137, 252, 381, 438
Eco88I CYCGRG 1 cut(s) 530
EcoICRI GAGCTC 1 cut(s) 670
EcoRII CCWGG 1 cut(s) 606
EcoT14I CCWWGG 1 cut(s) 566
EcoT22I ATGCAT 1 cut(s) 136
EcoT38I GRGCYC 2 cut(s) 672, 864
ErhI CCWWGG 1 cut(s) 566
FaeI CATG 6 cut(s) 138, 251, 263, 302, 676, 746
FalI AAGNNNNNCTT 2 cut(s) 668, 700
FatI CATG 6 cut(s) 134, 247, 259, 298, 672, 742
FblI GTMKAC 1 cut(s) 642
Fnu4HI GCNGC 2 cut(s) 87, 820
FokI GGATG 3 cut(s) 19, 56, 785
FriOI GRGCYC 2 cut(s) 672, 864
Fsp4HI GCNGC 2 cut(s) 87, 820
FspBI CTAG 1 cut(s) 885
GluI GCNGC 2 cut(s) 87, 820
HaeIII GGCC 2 cut(s) 96, 334
HapII CCGG 1 cut(s) 857
Hin1II CATG 6 cut(s) 138, 251, 263, 302, 676, 746
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HinfI GANTC 3 cut(s) 47, 169, 459
HpaII CCGG 1 cut(s) 857
HphI GGTGA 3 cut(s) 278, 348, 643
Hpy166II GTNNAC 2 cut(s) 448, 643
Hpy188I TCNGA 6 cut(s) 12, 117, 144, 162, 390, 627
Hpy8I GTNNAC 2 cut(s) 448, 643
HpyAV CCTTC 7 cut(s) 149, 257, 356, 413, 422, 583, 622
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 8 cut(s) 53, 65, 89, 126, 134, 343, 548, 875
HpyF10VI GCNNNNNNNGC 2 cut(s) 340, 881
HpyF3I CTNAG 4 cut(s) 11, 80, 206, 768
HpySE526I ACGT 1 cut(s) 109
Hsp92II CATG 6 cut(s) 138, 251, 263, 302, 676, 746
Kzo9I GATC 1 cut(s) 610
LmnI GCTCC 3 cut(s) 162, 842, 859
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 2 cut(s) 52, 121
MaeI CTAG 1 cut(s) 885
MaeII ACGT 1 cut(s) 109
MalI GATC 1 cut(s) 612
MboI GATC 1 cut(s) 610
MboII GAAGA 6 cut(s) 27, 196, 209, 245, 688, 692
MflI RGATCY 1 cut(s) 610
MhlI GDGCHC 2 cut(s) 672, 864
MluCI AATT 1 cut(s) 292
Mph1103I ATGCAT 1 cut(s) 136
MroXI GAANNNNTTC 2 cut(s) 680, 699
MslI CAYNNNNRTG 2 cut(s) 208, 264
MspI CCGG 1 cut(s) 857
MspR9I CCNGG 1 cut(s) 608
MvaI CCWGG 1 cut(s) 608
MwoI GCNNNNNNNGC 2 cut(s) 340, 881
NdeII GATC 1 cut(s) 610
NheI GCTAGC 1 cut(s) 884
NlaIII CATG 6 cut(s) 138, 251, 263, 302, 676, 746
NlaIV GGNNCC 4 cut(s) 97, 612, 855, 861
NsiI ATGCAT 1 cut(s) 136
NspI RCATGY 1 cut(s) 138
OliI CACNNNNGTG 1 cut(s) 208
PaeI GCATGC 1 cut(s) 138
PagI TCATGA 1 cut(s) 672
PdmI GAANNNNTTC 2 cut(s) 680, 699
PfeI GAWTC 3 cut(s) 47, 169, 459
PflMI CCANNNNNTGG 1 cut(s) 795
PfoI TCCNGGA 1 cut(s) 606
PkrI GCNGC 2 cut(s) 88, 821
PsiI TTATAA 3 cut(s) 225, 326, 558
Psp124BI GAGCTC 1 cut(s) 672
Psp6I CCWGG 1 cut(s) 606
PspGI CCWGG 1 cut(s) 606
PspN4I GGNNCC 4 cut(s) 97, 612, 855, 861
PspPI GGNCC 1 cut(s) 95
PsuI RGATCY 1 cut(s) 610
RsaI GTAC 2 cut(s) 602, 737
RsaNI GTAC 2 cut(s) 601, 736
RseI CAYNNNNRTG 2 cut(s) 208, 264
SacI GAGCTC 1 cut(s) 672
SatI GCNGC 2 cut(s) 87, 820
Sau3AI GATC 1 cut(s) 610
Sau96I GGNCC 1 cut(s) 95
ScaI AGTACT 1 cut(s) 602
ScrFI CCNGG 1 cut(s) 608
SduI GDGCHC 2 cut(s) 672, 864
SfaNI GCATC 2 cut(s) 52, 121
SfcI CTRYAG 2 cut(s) 515, 879
SmiMI CAYNNNNRTG 2 cut(s) 208, 264
SphI GCATGC 1 cut(s) 138
Sse9I AATT 1 cut(s) 292
SsiI CCGC 3 cut(s) 373, 542, 820
SspMI CTAG 1 cut(s) 885
SstI GAGCTC 1 cut(s) 672
StyD4I CCNGG 1 cut(s) 606
StyI CCWWGG 1 cut(s) 566
TaaI ACNGT 1 cut(s) 319
TaiI ACGT 1 cut(s) 112
TaqII GACCGA 1 cut(s) 472
TasI AATT 1 cut(s) 292
TatI WGTACW 1 cut(s) 600
TauI GCSGC 1 cut(s) 822
TfiI GAWTC 3 cut(s) 47, 169, 459
TscAI CASTG 1 cut(s) 133
TseI GCWGC 1 cut(s) 86
TspDTI ATGAA 3 cut(s) 264, 276, 689
TspRI CASTG 1 cut(s) 133
Van91I CCANNNNNTGG 1 cut(s) 795
XapI RAATTY 1 cut(s) 292
XceI RCATGY 1 cut(s) 138
XcmI CCANNNNNNNNNTGG 1 cut(s) 305
XmiI GTMKAC 1 cut(s) 642
XmnI GAANNNNTTC 2 cut(s) 680, 699
XspI CTAG 1 cut(s) 885
ZrmI AGTACT 1 cut(s) 602
Zsp2I ATGCAT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.