Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0007647

Physical Location & Seq

Genomic Coordinates Reverse (-)

11672064 .. 11675232

Gene Structure 3169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G011580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGTATCTTCTGAGGAGAAAATCTCAGAACCCTGTGGAGGATGATTCTGCACAAAAAGAGGCACAGAAAGAAGCTCAGAAAGAAGCAAAGATCAAAGAACTCAGGGCTGCACTCGGCCCGTTATCTGGGCGTAGTTTGAAGTACTGCACAGATGCATGCCTTGGGAGATATCTGGAAGCAAGGAACTGGAATCTTGAGAAGGCGAAGAAAATGATAGAGGAGACACTCAGGTGGAGGGCAAGTTATAAGCCTGAAGAAATCCGTTGGCATGAAGTAGCACATGAAGGTGAGACTGGCAAAGTGTCGAGAGCAAATTTTCATGATCGACTTGGGAGGACTGTACTTATAATGAGGCCAGCAATGCAGAACACAAATTCACCGGAAGGCAATGTTCGCCATTTAGTCTATCTTATAGAAAATGGTATCCTCAACCTTCGTGAAGGTCAAGAACAAATGTCATGGTTGATTGACTTCACTGGCTTCTCACTGAACACCAATGTTTCTGTCAAGACAGCTCGTGAATGTATCAACATTCTGCAGAACCATTACCCCGAGAGGCTTGCAGTTGCATTTCTTTACAACCCACCTAGGATTTTTCAGGCATTCTGGAAGGCTGTCAAGTACTTCCTGGATGCCAAGACATTTCAGAAGGTGAAGTTTGTTTACCCCAAAGGTAAGGAAAGTGTGGAGCTCATGAAGACTTTCTTTGATGTTGACAATCTTCCAGTCGAGTTTGGGGGACAGACCACCCTAAAGTACGATCACGAGGAGTTTTCACGTATGATGGCCCAGGATGATGTGAAAACTGCCAAGTTATGGGGACTTGATGAGAAGCCATGCAACATAGCAAATGGACATATGGGAGCAGAGGTGGCACCAGAGCCTATTGCAACCGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

299

Amino Acids

34.46

Weight (kDa)

8.7

Isoelectric Point (pI)

50.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_N	PF03765	48 - 74	6.8e-07	CRAL/TRIO, N-terminal domain
CRAL_TRIO	PF00650	100 - 247	4.6e-34	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	127 - 256	1.1e-08	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36640 AT4G36640 AT4G36640
fragaria_vesca	FvH4_1g13330 FvH4_1g13330 FvH4_1g13330
malus_domestica	MD02G1148100.v1.1 MD15G1262300.v1.1
prunus_persica	Prupe.7G154300_v2.0.a1 Prupe.7G154300_v2.0.a1
pyrus_communis	pycom02g11680 pycom15g22920
rosa_chinensis	RchiOBHm_Chr2g0101611
rosa_laevigata	RLG00000017094
rosa_multiflora	Rmu_sc0006153.1_g000004
rosa_roxburghii	Rroxscaffold_2G00141150
rosa_rugosa	Rorug02G0101100 Rorug02G0101200 Rorug02G0101300
rosa_samantha	Rh2AG148400 Rh2BG153800 Rh2CG154200 Rh2DG154000
rosa_wichuraiana	Rw2G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	246, 347
AccB1I	GGYRCC	1 cut(s)	874
AccB7I	CCANNNNNTGG	1 cut(s)	816
AciI	CCGC	1 cut(s)	894
AcsI	RAATTY	2 cut(s)	313, 373
AcuI	CTGAAG	1 cut(s)	273
AfaI	GTAC	4 cut(s)	143, 342, 623, 758
AfiI	CCNNNNNNNGG	3 cut(s)	37, 125, 816
AgsI	TTSAA	1 cut(s)	139
AjnI	CCWGG	2 cut(s)	627, 789
AleI	CACNNNNGTG	1 cut(s)	229
AluBI	AGCT	3 cut(s)	74, 515, 691
AluI	AGCT	3 cut(s)	74, 515, 691
Alw21I	GWGCWC	1 cut(s)	693
Alw26I	GTCTC	2 cut(s)	215, 284
Ama87I	CYCGRG	1 cut(s)	551
AoxI	GGCC	3 cut(s)	115, 353, 786
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	2 cut(s)	313, 373
Asp700I	GAANNNNTTC	1 cut(s)	701
AspA2I	CCTAGG	1 cut(s)	587
AspS9I	GGNCC	2 cut(s)	116, 787
AsuHPI	GGTGA	3 cut(s)	299, 369, 664
AvaI	CYCGRG	1 cut(s)	551
AvrII	CCTAGG	1 cut(s)	587
BanI	GGYRCC	1 cut(s)	874
BanII	GRGCYC	1 cut(s)	693
BarI	GAAGNNNNNNTAC	2 cut(s)	647, 679
BauI	CACGAG	2 cut(s)	516, 764
BbsI	GAAGAC	1 cut(s)	704
Bbv12I	GWGCWC	1 cut(s)	693
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	1 cut(s)	778
BcgI	CGANNNNNNTGC	2 cut(s)	542, 576
BciT130I	CCWGG	2 cut(s)	629, 791
BciVI	GTATCC	1 cut(s)	434
BcoDI	GTCTC	2 cut(s)	215, 284
BfaI	CTAG	1 cut(s)	588
BfmI	CTRYAG	1 cut(s)	536
BfuI	GTATCC	1 cut(s)	434
BisI	GCNGC	1 cut(s)	108
BlnI	CCTAGG	1 cut(s)	587
BlsI	GCNGC	1 cut(s)	109
BmcAI	AGTACT	2 cut(s)	143, 623
Bme1390I	CCNGG	2 cut(s)	629, 791
BmeT110I	CYCGRG	1 cut(s)	551
BmgT120I	GGNCC	2 cut(s)	116, 787
BmiI	GGNNCC	1 cut(s)	876
BmrFI	CCNGG	2 cut(s)	629, 791
BmsI	GCATC	2 cut(s)	142, 622
BpiI	GAAGAC	1 cut(s)	704
BplI	GAGNNNNNCTC	2 cut(s)	7, 39
BpuEI	CTTGAG	1 cut(s)	215
BsaAI	YACGTR	1 cut(s)	779
BsaJI	CCNNGG	3 cut(s)	160, 587, 789
BsaWI	WCCGGW	1 cut(s)	379
BsaXI	ACNNNNNCTCC	4 cut(s)	226, 256, 855, 885
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 125, 816
Bse1I	ACTGG	4 cut(s)	191, 298, 481, 725
Bse3DI	GCAATG	2 cut(s)	366, 394
BseBI	CCWGG	2 cut(s)	629, 791
BseDI	CCNNGG	3 cut(s)	160, 587, 789
BseGI	GGATG	3 cut(s)	46, 637, 799
BseLI	CCNNNNNNNGG	3 cut(s)	37, 125, 816
BseMI	GCAATG	2 cut(s)	366, 394
BseMII	CTCAG	4 cut(s)	38, 89, 115, 241
BseNI	ACTGG	4 cut(s)	191, 298, 481, 725
BseRI	GAGGAG	3 cut(s)	28, 233, 782
BseXI	GCAGC	1 cut(s)	94
BsgI	GTGCAG	3 cut(s)	33, 93, 130
BshFI	GGCC	3 cut(s)	117, 355, 788
BshNI	GGYRCC	1 cut(s)	874
BsiHKAI	GWGCWC	1 cut(s)	693
BsiHKCI	CYCGRG	1 cut(s)	551
BsiSI	CCGG	1 cut(s)	380
BslFI	GGGAC	2 cut(s)	753, 834
BslI	CCNNNNNNNGG	3 cut(s)	37, 125, 816
BsmAI	GTCTC	2 cut(s)	215, 284
BsmFI	GGGAC	2 cut(s)	753, 834
BsmI	GAATGC	1 cut(s)	602
BsnI	GGCC	3 cut(s)	117, 355, 788
BsoBI	CYCGRG	1 cut(s)	551
Bsp1286I	GDGCHC	1 cut(s)	693
Bsp143I	GATC	3 cut(s)	90, 322, 760
BspACI	CCGC	1 cut(s)	894
BspANI	GGCC	3 cut(s)	117, 355, 788
BspCNI	CTCAG	4 cut(s)	37, 88, 114, 240
BspHI	TCATGA	2 cut(s)	319, 693
BspLI	GGNNCC	1 cut(s)	876
BspMAI	CTGCAG	1 cut(s)	540
BspT107I	GGYRCC	1 cut(s)	874
BsrDI	GCAATG	2 cut(s)	366, 394
BsrI	ACTGG	4 cut(s)	191, 298, 481, 725
BssECI	CCNNGG	3 cut(s)	160, 587, 789
BssMI	GATC	3 cut(s)	90, 322, 760
BssSI	CACGAG	2 cut(s)	516, 764
BssT1I	CCWWGG	2 cut(s)	160, 587
Bst2BI	CACGAG	2 cut(s)	516, 764
Bst2UI	CCWGG	2 cut(s)	629, 791
Bst4CI	ACNGT	1 cut(s)	340
BstBAI	YACGTR	1 cut(s)	779
BstC8I	GCNNGC	3 cut(s)	157, 357, 561
BstDEI	CTNAG	5 cut(s)	11, 24, 75, 101, 227
BstF5I	GGATG	3 cut(s)	46, 637, 799
BstKTI	GATC	3 cut(s)	93, 325, 763
BstMAI	GTCTC	2 cut(s)	215, 284
BstMBI	GATC	3 cut(s)	90, 322, 760
BstMWI	GCNNNNNNNGC	3 cut(s)	361, 393, 872
BstNI	CCWGG	2 cut(s)	629, 791
BstNSI	RCATGY	1 cut(s)	159
BstSCI	CCNGG	2 cut(s)	627, 789
BstSFI	CTRYAG	1 cut(s)	536
BstV1I	GCAGC	1 cut(s)	94
BstV2I	GAAGAC	1 cut(s)	704
BsuI	GTATCC	1 cut(s)	434
BsuRI	GGCC	3 cut(s)	117, 355, 788
BtsCI	GGATG	3 cut(s)	46, 637, 799
BtsIMutI	CAGTG	2 cut(s)	474, 485
Cac8I	GCNNGC	3 cut(s)	157, 357, 561
CciI	TCATGA	2 cut(s)	319, 693
Cfr13I	GGNCC	2 cut(s)	116, 787
Csp6I	GTAC	4 cut(s)	142, 341, 622, 757
CviAII	CATG	7 cut(s)	156, 269, 281, 320, 459, 694, 837
CviQI	GTAC	4 cut(s)	142, 341, 622, 757
DdeI	CTNAG	5 cut(s)	11, 24, 75, 101, 227
DpnI	GATC	3 cut(s)	92, 324, 762
DpnII	GATC	3 cut(s)	90, 322, 760
Ecl136II	GAGCTC	1 cut(s)	691
Eco130I	CCWWGG	2 cut(s)	160, 587
Eco24I	GRGCYC	1 cut(s)	693
Eco32I	GATATC	1 cut(s)	170
Eco53kI	GAGCTC	1 cut(s)	691
Eco57I	CTGAAG	1 cut(s)	273
Eco88I	CYCGRG	1 cut(s)	551
EcoICRI	GAGCTC	1 cut(s)	691
EcoRII	CCWGG	2 cut(s)	627, 789
EcoRV	GATATC	1 cut(s)	170
EcoT14I	CCWWGG	2 cut(s)	160, 587
EcoT22I	ATGCAT	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	693
ErhI	CCWWGG	2 cut(s)	160, 587
FaeI	CATG	7 cut(s)	159, 272, 284, 323, 462, 697, 840
FalI	AAGNNNNNCTT	2 cut(s)	689, 721
FaqI	GGGAC	2 cut(s)	753, 834
FatI	CATG	7 cut(s)	155, 268, 280, 319, 458, 693, 836
FauNDI	CATATG	1 cut(s)	858
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	3 cut(s)	53, 644, 806
FriOI	GRGCYC	1 cut(s)	693
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	1 cut(s)	588
GluI	GCNGC	1 cut(s)	108
HaeIII	GGCC	3 cut(s)	117, 355, 788
HapII	CCGG	1 cut(s)	380
Hin1II	CATG	7 cut(s)	159, 272, 284, 323, 462, 697, 840
HincII	GTYRAC	1 cut(s)	715
HindII	GTYRAC	1 cut(s)	715
HinfI	GANTC	2 cut(s)	44, 190
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	3 cut(s)	299, 369, 664
Hpy166II	GTNNAC	2 cut(s)	664, 715
Hpy188I	TCNGA	4 cut(s)	12, 27, 78, 648
Hpy8I	GTNNAC	2 cut(s)	664, 715
HpyAV	CCTTC	7 cut(s)	193, 278, 377, 434, 443, 604, 643
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4IV	ACGT	1 cut(s)	778
HpyF10VI	GCNNNNNNNGC	3 cut(s)	361, 393, 872
HpyF3I	CTNAG	5 cut(s)	11, 24, 75, 101, 227
HpySE526I	ACGT	1 cut(s)	778
Hsp92II	CATG	7 cut(s)	159, 272, 284, 323, 462, 697, 840
Kzo9I	GATC	3 cut(s)	90, 322, 760
LmnI	GCTCC	2 cut(s)	688, 863
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	2 cut(s)	142, 622
MaeI	CTAG	1 cut(s)	588
MaeII	ACGT	1 cut(s)	778
MalI	GATC	3 cut(s)	92, 324, 762
MboI	GATC	3 cut(s)	90, 322, 760
MboII	GAAGA	4 cut(s)	217, 266, 709, 713
MhlI	GDGCHC	1 cut(s)	693
MluCI	AATT	2 cut(s)	313, 373
Mph1103I	ATGCAT	1 cut(s)	157
MroXI	GAANNNNTTC	1 cut(s)	701
MslI	CAYNNNNRTG	2 cut(s)	229, 285
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	2 cut(s)	629, 791
Mva1269I	GAATGC	1 cut(s)	602
MvaI	CCWGG	2 cut(s)	629, 791
MwoI	GCNNNNNNNGC	3 cut(s)	361, 393, 872
NdeI	CATATG	1 cut(s)	858
NdeII	GATC	3 cut(s)	90, 322, 760
NlaIII	CATG	7 cut(s)	159, 272, 284, 323, 462, 697, 840
NlaIV	GGNNCC	1 cut(s)	876
NmeAIII	GCCGAG	1 cut(s)	93
NsiI	ATGCAT	1 cut(s)	157
NspI	RCATGY	1 cut(s)	159
OliI	CACNNNNGTG	1 cut(s)	229
PaeI	GCATGC	1 cut(s)	159
PagI	TCATGA	2 cut(s)	319, 693
PctI	GAATGC	1 cut(s)	602
PdmI	GAANNNNTTC	1 cut(s)	701
PfeI	GAWTC	2 cut(s)	44, 190
PflMI	CCANNNNNTGG	1 cut(s)	816
PfoI	TCCNGGA	1 cut(s)	627
PkrI	GCNGC	1 cut(s)	109
Ppu21I	YACGTR	1 cut(s)	779
PsiI	TTATAA	2 cut(s)	246, 347
Psp124BI	GAGCTC	1 cut(s)	693
Psp6I	CCWGG	2 cut(s)	627, 789
PspGI	CCWGG	2 cut(s)	627, 789
PspN4I	GGNNCC	1 cut(s)	876
PspPI	GGNCC	2 cut(s)	116, 787
PstI	CTGCAG	1 cut(s)	540
RsaI	GTAC	4 cut(s)	143, 342, 623, 758
RsaNI	GTAC	4 cut(s)	142, 341, 622, 757
RseI	CAYNNNNRTG	2 cut(s)	229, 285
SacI	GAGCTC	1 cut(s)	693
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	3 cut(s)	90, 322, 760
Sau96I	GGNCC	2 cut(s)	116, 787
ScaI	AGTACT	2 cut(s)	143, 623
ScrFI	CCNGG	2 cut(s)	629, 791
SduI	GDGCHC	1 cut(s)	693
SfaNI	GCATC	2 cut(s)	142, 622
SfcI	CTRYAG	1 cut(s)	536
SmiMI	CAYNNNNRTG	2 cut(s)	229, 285
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SphI	GCATGC	1 cut(s)	159
Sse9I	AATT	2 cut(s)	313, 373
SsiI	CCGC	1 cut(s)	894
SspMI	CTAG	1 cut(s)	588
SstI	GAGCTC	1 cut(s)	693
StyD4I	CCNGG	2 cut(s)	627, 789
StyI	CCWWGG	2 cut(s)	160, 587
TaaI	ACNGT	1 cut(s)	340
TaiI	ACGT	1 cut(s)	781
TaqI	TCGA	3 cut(s)	305, 325, 729
TasI	AATT	2 cut(s)	313, 373
TatI	WGTACW	3 cut(s)	141, 340, 621
TfiI	GAWTC	2 cut(s)	44, 190
TscAI	CASTG	2 cut(s)	481, 492
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	4 cut(s)	285, 297, 308, 710
TspGWI	ACGGA	1 cut(s)	251
TspRI	CASTG	2 cut(s)	481, 492
Van91I	CCANNNNNTGG	1 cut(s)	816
XapI	RAATTY	2 cut(s)	313, 373
XceI	RCATGY	1 cut(s)	159
XmaJI	CCTAGG	1 cut(s)	587
XmnI	GAANNNNTTC	1 cut(s)	701
XspI	CTAG	1 cut(s)	588
ZrmI	AGTACT	2 cut(s)	143, 623
Zsp2I	ATGCAT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.