Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008316

Physical Location & Seq

Genomic Coordinates Reverse (-)

17390626 .. 17393479

Gene Structure 2854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G36910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGACGCCGTCCTTTACTCTGTTCCACTCTCCTTCACTCCCCTACGCGCATCATCCTCTCCTTCCTCGCCGTATCTTCTTCTGCCGAGGTTTCTCTCCGTTCAGCCATGTCACAAATTCACCTTCTCTCGAAGCTTCCCTTCCAAATCCCGGATTCCCTCAGCTTCTTCCGCCGCCGGTTCCACGTTGATGACGAATTCCTCTTCGCCAAGAAGTGGAGTGTACACTGTTGGTGAGTTCATGACAAAGAAAGAGGACTTGCACGTGGTGAAACCTACGACTACTGTGGATGAAGCTCTGGAACTCCTTGTGGAGAATAGAATCACTGGATTTCCTGTAATTGACGAAGACTGGAAATTGGTTGGGCTTGTTTCAGATTATGACTTGTTGGCTTTGGACTCCATATCTGGTAGTGGAAGAACAGAAAATTCCATGTTCCCTGAGGTTGACAGCACCTGGAAAACTTTCAATGCTGTGCAAAAGCTACTCAGCAAAACCAATGGGAAGCTTGTTGGAGATTTAATGACACCAGCTCCACTAGTTGTTGAGGAAAAAACCAACCTGGAAGATGCTGCTAAAATATTGCTTGAGACAAAATATCGCCGGCTCCCTGTGGTAGATTCTGATGGCAAATTGGTTGGTATCATCACAAGAGGAAACGTGGTTAGAGCCGCGCTTCAAATAAAGCGCTCTGGTGATAGGAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0019725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

236

Amino Acids

25.77

Weight (kDa)

8.59

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	77 - 131	1.7e-14	CBS domain
CBS	PF00571	171 - 225	1.6e-17	CBS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36910
fragaria_vesca	FvH4_1g16360 FvH4_1g16360
malus_domestica	MD02G1176100.v1.1 MD15G1286500.v1.1
prunus_persica	Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1
pyrus_communis	pycom02g14220 pycom15g24980
rosa_chinensis	RchiOBHm_Chr2g0106231
rosa_laevigata	RLG00000017481
rosa_multiflora	Rmu_sc0008603.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137350
rosa_rugosa	Rorug02G0133700
rosa_samantha	Rh2AG184700 Rh2BG195100 Rh2CG189800 Rh2DG191000
rosa_wichuraiana	Rw2G014420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	215
AccII	CGCG	2 cut(s)	48, 674
AciI	CCGC	3 cut(s)	171, 174, 672
AcsI	RAATTY	3 cut(s)	116, 196, 427
AcvI	CACGTG	1 cut(s)	265
AcyI	GRCGYC	1 cut(s)	6
AdeI	CACNNNGTG	1 cut(s)	268
AfaI	GTAC	1 cut(s)	224
AfeI	AGCGCT	1 cut(s)	689
AfiI	CCNNNNNNNGG	2 cut(s)	150, 215
AgsI	TTSAA	2 cut(s)	469, 680
AhlI	ACTAGT	1 cut(s)	538
AjnI	CCWGG	2 cut(s)	455, 561
AluBI	AGCT	6 cut(s)	135, 164, 296, 484, 508, 533
AluI	AGCT	6 cut(s)	135, 164, 296, 484, 508, 533
Alw26I	GTCTC	1 cut(s)	584
AlwNI	CAGNNNCTG	1 cut(s)	456
Aor51HI	AGCGCT	1 cut(s)	689
ApeKI	GCWGC	1 cut(s)	572
ApoI	RAATTY	3 cut(s)	116, 196, 427
Asp700I	GAANNNNTTC	1 cut(s)	464
AspLEI	GCGC	3 cut(s)	50, 676, 690
AsuC2I	CCSGG	1 cut(s)	151
AsuHPI	GGTGA	4 cut(s)	112, 245, 280, 707
AxyI	CCTNAGG	1 cut(s)	441
BbrPI	CACGTG	1 cut(s)	265
BbsI	GAAGAC	1 cut(s)	354
BbvCI	CCTCAGC	1 cut(s)	160
BbvI	GCAGC	1 cut(s)	559
BccI	CCATC	1 cut(s)	620
BceAI	ACGGC	1 cut(s)	55
BciT130I	CCWGG	2 cut(s)	457, 563
BcnI	CCSGG	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	584
BcuI	ACTAGT	1 cut(s)	538
BfaI	CTAG	1 cut(s)	539
BfoI	RGCGCY	1 cut(s)	691
BisI	GCNGC	3 cut(s)	174, 573, 672
BlsI	GCNGC	3 cut(s)	175, 574, 673
Bme1390I	CCNGG	3 cut(s)	151, 457, 563
BmiI	GGNNCC	2 cut(s)	181, 608
BmrFI	CCNGG	3 cut(s)	151, 457, 563
BmsI	GCATC	2 cut(s)	59, 559
BpiI	GAAGAC	1 cut(s)	354
Bpu10I	CCTNAGC	1 cut(s)	160
BpuEI	CTTGAG	1 cut(s)	608
BpuMI	CCSGG	1 cut(s)	151
BsaAI	YACGTR	1 cut(s)	265
BsaHI	GRCGYC	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	86
BsaXI	ACNNNNNCTCC	2 cut(s)	517, 547
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 215
Bse118I	RCCGGY	2 cut(s)	176, 603
Bse1I	ACTGG	2 cut(s)	331, 356
Bse21I	CCTNAGG	1 cut(s)	441
BseBI	CCWGG	2 cut(s)	457, 563
BseDI	CCNNGG	1 cut(s)	86
BseGI	GGATG	2 cut(s)	53, 295
BseLI	CCNNNNNNNGG	2 cut(s)	150, 215
BseMII	CTCAG	3 cut(s)	174, 432, 502
BseNI	ACTGG	2 cut(s)	331, 356
BseXI	GCAGC	1 cut(s)	559
Bsh1236I	CGCG	2 cut(s)	48, 674
BsiSI	CCGG	3 cut(s)	151, 177, 604
BslI	CCNNNNNNNGG	2 cut(s)	150, 215
BsmAI	GTCTC	1 cut(s)	584
BsmI	GAATGC	1 cut(s)	709
Bsp1407I	TGTACA	1 cut(s)	222
BspACI	CCGC	3 cut(s)	171, 174, 672
BspCNI	CTCAG	3 cut(s)	173, 433, 501
BspFNI	CGCG	2 cut(s)	48, 674
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	2 cut(s)	181, 608
BsrFI	RCCGGY	2 cut(s)	176, 603
BsrGI	TGTACA	1 cut(s)	222
BsrI	ACTGG	2 cut(s)	331, 356
BssAI	RCCGGY	2 cut(s)	176, 603
BssECI	CCNNGG	1 cut(s)	86
BssNI	GRCGYC	1 cut(s)	6
Bst2UI	CCWGG	2 cut(s)	457, 563
Bst4CI	ACNGT	2 cut(s)	229, 286
Bst6I	CTCTTC	1 cut(s)	208
BstACI	GRCGYC	1 cut(s)	6
BstAUI	TGTACA	1 cut(s)	222
BstBAI	YACGTR	1 cut(s)	265
BstC8I	GCNNGC	1 cut(s)	605
BstDEI	CTNAG	3 cut(s)	160, 441, 488
BstF5I	GGATG	2 cut(s)	53, 295
BstFNI	CGCG	2 cut(s)	48, 674
BstH2I	RGCGCY	1 cut(s)	691
BstHHI	GCGC	3 cut(s)	50, 676, 690
BstMAI	GTCTC	1 cut(s)	584
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	2 cut(s)	457, 563
BstSCI	CCNGG	3 cut(s)	149, 455, 561
BstUI	CGCG	2 cut(s)	48, 674
BstV1I	GCAGC	1 cut(s)	559
BstV2I	GAAGAC	1 cut(s)	354
Bsu36I	CCTNAGG	1 cut(s)	441
BtsCI	GGATG	2 cut(s)	53, 295
BtsIMutI	CAGTG	2 cut(s)	225, 324
Cac8I	GCNNGC	1 cut(s)	605
CaiI	CAGNNNCTG	1 cut(s)	456
CciI	TCATGA	1 cut(s)	240
CfoI	GCGC	3 cut(s)	50, 676, 690
Cfr10I	RCCGGY	2 cut(s)	176, 603
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	3 cut(s)	108, 241, 433
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	3 cut(s)	160, 441, 488
DraIII	CACNNNGTG	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	208
EciI	GGCGGA	1 cut(s)	160
Eco47III	AGCGCT	1 cut(s)	689
Eco72I	CACGTG	1 cut(s)	265
Eco81I	CCTNAGG	1 cut(s)	441
EcoRI	GAATTC	1 cut(s)	196
EcoRII	CCWGG	2 cut(s)	455, 561
FaeI	CATG	3 cut(s)	111, 244, 436
FaiI	YATR	5 cut(s)	109, 242, 381, 404, 434
FalI	AAGNNNNNCTT	2 cut(s)	124, 156
FatI	CATG	3 cut(s)	107, 240, 432
Fnu4HI	GCNGC	3 cut(s)	174, 573, 672
FokI	GGATG	2 cut(s)	40, 302
Fsp4HI	GCNGC	3 cut(s)	174, 573, 672
FspBI	CTAG	1 cut(s)	539
GlaI	GCGC	3 cut(s)	49, 675, 689
GluI	GCNGC	3 cut(s)	174, 573, 672
HaeII	RGCGCY	1 cut(s)	691
HapII	CCGG	3 cut(s)	151, 177, 604
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	3 cut(s)	50, 676, 690
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	3 cut(s)	111, 244, 436
Hin6I	GCGC	3 cut(s)	48, 674, 688
HinP1I	GCGC	3 cut(s)	48, 674, 688
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HindIII	AAGCTT	2 cut(s)	133, 506
HinfI	GANTC	4 cut(s)	154, 321, 398, 620
HpaII	CCGG	3 cut(s)	151, 177, 604
HphI	GGTGA	4 cut(s)	112, 245, 280, 707
Hpy166II	GTNNAC	3 cut(s)	223, 225, 448
Hpy188I	TCNGA	2 cut(s)	376, 625
Hpy188III	TCNNGA	3 cut(s)	129, 241, 299
Hpy8I	GTNNAC	3 cut(s)	223, 225, 448
HpyAV	CCTTC	4 cut(s)	43, 72, 133, 150
HpyCH4III	ACNGT	2 cut(s)	229, 286
HpyCH4IV	ACGT	3 cut(s)	185, 264, 660
HpyCH4V	TGCA	2 cut(s)	262, 478
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	3 cut(s)	160, 441, 488
HpySE526I	ACGT	3 cut(s)	185, 264, 660
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	3 cut(s)	111, 244, 436
HspAI	GCGC	3 cut(s)	48, 674, 688
KroI	GCCGGC	1 cut(s)	603
KroNI	GCCGGC	1 cut(s)	605
LmnI	GCTCC	2 cut(s)	538, 612
Lsp1109I	GCAGC	1 cut(s)	559
LweI	GCATC	2 cut(s)	59, 559
MaeI	CTAG	1 cut(s)	539
MaeII	ACGT	3 cut(s)	185, 264, 660
MaeIII	GTNAC	1 cut(s)	110
MboII	GAAGA	7 cut(s)	68, 71, 159, 195, 359, 429, 578
MluCI	AATT	6 cut(s)	116, 196, 339, 356, 427, 632
MlyI	GAGTC	1 cut(s)	392
MmeI	TCCRAC	1 cut(s)	493
MnlI	CCTC	9 cut(s)	67, 76, 81, 169, 211, 247, 436, 541, 647
MroNI	GCCGGC	1 cut(s)	603
MroXI	GAANNNNTTC	1 cut(s)	464
MseI	TTAA	1 cut(s)	521
MslI	CAYNNNNRTG	1 cut(s)	188
MspI	CCGG	3 cut(s)	151, 177, 604
MspR9I	CCNGG	3 cut(s)	151, 457, 563
Mva1269I	GAATGC	1 cut(s)	709
MvaI	CCWGG	2 cut(s)	457, 563
MvnI	CGCG	2 cut(s)	48, 674
MwoI	GCNNNNNNNGC	1 cut(s)	170
NaeI	GCCGGC	1 cut(s)	605
NciI	CCSGG	1 cut(s)	151
NgoMIV	GCCGGC	1 cut(s)	603
NlaIII	CATG	3 cut(s)	111, 244, 436
NlaIV	GGNNCC	2 cut(s)	181, 608
NmeAIII	GCCGAG	1 cut(s)	111
NmuCI	GTSAC	1 cut(s)	110
PagI	TCATGA	1 cut(s)	240
PcsI	WCGNNNNNNNCGW	1 cut(s)	191
PctI	GAATGC	1 cut(s)	709
PdiI	GCCGGC	1 cut(s)	605
PdmI	GAANNNNTTC	1 cut(s)	464
PfeI	GAWTC	3 cut(s)	154, 321, 620
PflFI	GACNNNGTC	1 cut(s)	8
PflMI	CCANNNNNTGG	1 cut(s)	215
PfoI	TCCNGGA	1 cut(s)	149
PkrI	GCNGC	3 cut(s)	175, 574, 673
PleI	GAGTC	1 cut(s)	392
PmaCI	CACGTG	1 cut(s)	265
PmlI	CACGTG	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	392
Ppu21I	YACGTR	1 cut(s)	265
Psp6I	CCWGG	2 cut(s)	455, 561
PspCI	CACGTG	1 cut(s)	265
PspGI	CCWGG	2 cut(s)	455, 561
PspN4I	GGNNCC	2 cut(s)	181, 608
PstNI	CAGNNNCTG	1 cut(s)	456
PsyI	GACNNNGTC	1 cut(s)	8
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
RseI	CAYNNNNRTG	1 cut(s)	188
SaqAI	TTAA	1 cut(s)	521
SatI	GCNGC	3 cut(s)	174, 573, 672
SchI	GAGTC	1 cut(s)	392
ScrFI	CCNGG	3 cut(s)	151, 457, 563
SfaNI	GCATC	2 cut(s)	59, 559
SmiMI	CAYNNNNRTG	1 cut(s)	188
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
SpeI	ACTAGT	1 cut(s)	538
Sse9I	AATT	6 cut(s)	116, 196, 339, 356, 427, 632
SsiI	CCGC	3 cut(s)	171, 174, 672
SspI	AATATT	1 cut(s)	582
SspMI	CTAG	1 cut(s)	539
StyD4I	CCNGG	3 cut(s)	149, 455, 561
TaaI	ACNGT	2 cut(s)	229, 286
TaiI	ACGT	3 cut(s)	188, 267, 663
TaqI	TCGA	1 cut(s)	130
TasI	AATT	6 cut(s)	116, 196, 339, 356, 427, 632
TatI	WGTACW	1 cut(s)	222
TauI	GCSGC	2 cut(s)	176, 674
TfiI	GAWTC	3 cut(s)	154, 321, 620
Tru1I	TTAA	1 cut(s)	521
Tru9I	TTAA	1 cut(s)	521
TscAI	CASTG	2 cut(s)	232, 331
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	1 cut(s)	572
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	2 cut(s)	229, 306
TspGWI	ACGGA	1 cut(s)	88
TspRI	CASTG	2 cut(s)	232, 331
Tth111I	GACNNNGTC	1 cut(s)	8
Van91I	CCANNNNNTGG	1 cut(s)	215
XapI	RAATTY	3 cut(s)	116, 196, 427
XmnI	GAANNNNTTC	1 cut(s)	464
XspI	CTAG	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.