Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0008316

Physical Location & Seq

Genomic Coordinates Forward (+)

15538900 .. 15542976

Gene Structure 4077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1176100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCCTCGATTTTCGTTCCACAACCTCCGCTCCTCCCTCTCTCCACGCCTTCGGCTTCTGCTCCGGCCGATCGGACGCCGTGCTTGCCGCTGGTAACCCGTCCCGGTCAGAGGCTCTTCCTGGTATCCGTCGCCACTTTGGGGGTTCGGAGGTCCTTCAATGTCGCCGCCTCCGCCACCTTCATGCCTAATTCCGTACCGGAGAAAAATGGAGTTCTTACTGTTGGCGATTTTATGACGAGAAGAGAGGATTTGCACGTGGTGAAGCCTACAACGACTGTCGATGAAGCTATAGAGCTTCTTGTGGATAACAGAATCACTGGTTTTCCGGTGATCGACGATGACTGGACACTGGTCGGTCTTGTCTCGGATTATGACTTGTTAGCACTGGACACTATTTCAGGTAGTGGAAGAACTGACAACAGCATGTTTCCAGAAGTTGACAGCACTTGGAAAACTTTTAACGAGGTACAGAAATTGCTCAGTAAAACCAATGGTCAGGTGGTGGGTGATGTTATGACACCAGCCCCAGTTGTCGTTAGTGAAACCACTAATCTTGAGGGTGTTGCTAGAATGTTGCTCGAGACAAAATATCGAAGACTTCCAGTTGTAAATGAAAGCGGCAAGCTGATTGGAATTATTACAAGAGGAAACATCATAAGAGCTGCCCTTCAAATGAAACATGCTAGTGAATCGAAAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0019725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

235

Amino Acids

25.39

Weight (kDa)

5.75

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	75 - 129	2e-13	CBS domain
CBS	PF00571	169 - 223	1e-16	CBS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36910
fragaria_vesca	FvH4_1g16360 FvH4_1g16360
malus_domestica	MD02G1176100.v1.1 MD15G1286500.v1.1
prunus_persica	Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1
pyrus_communis	pycom02g14220 pycom15g24980
rosa_chinensis	RchiOBHm_Chr2g0106231
rosa_laevigata	RLG00000017481
rosa_multiflora	Rmu_sc0008603.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137350
rosa_rugosa	Rorug02G0133700
rosa_samantha	Rh2AG184700 Rh2BG195100 Rh2CG189800 Rh2DG191000
rosa_wichuraiana	Rw2G014420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	31
AciI	CCGC	5 cut(s)	29, 89, 168, 174, 621
AcoI	YGGCCR	1 cut(s)	66
AcvI	CACGTG	1 cut(s)	259
AcyI	GRCGYC	1 cut(s)	77
AdeI	CACNNNGTG	1 cut(s)	262
AfaI	GTAC	2 cut(s)	198, 471
AfiI	CCNNNNNNNGG	2 cut(s)	111, 141
AgsI	TTSAA	2 cut(s)	160, 674
AjnI	CCWGG	1 cut(s)	120
AluBI	AGCT	4 cut(s)	290, 298, 628, 665
AluI	AGCT	4 cut(s)	290, 298, 628, 665
Alw26I	GTCTC	2 cut(s)	370, 578
Ama87I	CYCGRG	1 cut(s)	581
AoxI	GGCC	2 cut(s)	3, 66
ApeKI	GCWGC	1 cut(s)	665
AspS9I	GGNCC	1 cut(s)	153
AsuC2I	CCSGG	1 cut(s)	105
AsuHPI	GGTGA	3 cut(s)	274, 343, 521
AvaI	CYCGRG	1 cut(s)	581
AvaII	GGWCC	1 cut(s)	153
BbrPI	CACGTG	1 cut(s)	259
BbsI	GAAGAC	1 cut(s)	604
BbvI	GCAGC	1 cut(s)	652
BceAI	ACGGC	1 cut(s)	64
BciT130I	CCWGG	1 cut(s)	122
BciVI	GTATCC	1 cut(s)	136
BcnI	CCSGG	1 cut(s)	105
BcoDI	GTCTC	2 cut(s)	370, 578
BfaI	CTAG	2 cut(s)	570, 687
BfmI	CTRYAG	1 cut(s)	291
BfuI	GTATCC	1 cut(s)	136
BisI	GCNGC	4 cut(s)	89, 168, 622, 666
BlsI	GCNGC	4 cut(s)	90, 169, 623, 667
Bme1390I	CCNGG	2 cut(s)	105, 122
Bme18I	GGWCC	1 cut(s)	153
BmeT110I	CYCGRG	1 cut(s)	581
BmgT120I	GGNCC	1 cut(s)	153
BmrFI	CCNGG	2 cut(s)	105, 122
BmrI	ACTGGG	1 cut(s)	524
BmuI	ACTGGG	1 cut(s)	524
BoxI	GACNNNNGTC	1 cut(s)	353
BpiI	GAAGAC	1 cut(s)	604
BpuEI	CTTGAG	1 cut(s)	578
BpuMI	CCSGG	1 cut(s)	105
BsaAI	YACGTR	1 cut(s)	259
BsaHI	GRCGYC	1 cut(s)	77
BsaWI	WCCGGW	2 cut(s)	199, 328
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 141
Bse1I	ACTGG	6 cut(s)	325, 350, 357, 393, 530, 605
BseBI	CCWGG	1 cut(s)	122
BseLI	CCNNNNNNNGG	2 cut(s)	111, 141
BseMII	CTCAG	1 cut(s)	496
BseNI	ACTGG	6 cut(s)	325, 350, 357, 393, 530, 605
BseRI	GAGGAG	1 cut(s)	23
BseX3I	CGGCCG	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	652
Bsh1285I	CGRYCG	2 cut(s)	69, 73
BshFI	GGCC	2 cut(s)	5, 68
BsiEI	CGRYCG	2 cut(s)	69, 73
BsiHKCI	CYCGRG	1 cut(s)	581
BsiSI	CCGG	4 cut(s)	65, 105, 200, 329
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	2 cut(s)	111, 141
BsmAI	GTCTC	2 cut(s)	370, 578
BsmFI	GGGAC	1 cut(s)	87
BsnI	GGCC	2 cut(s)	5, 68
BsoBI	CYCGRG	1 cut(s)	581
Bsp143I	GATC	2 cut(s)	70, 333
BspACI	CCGC	5 cut(s)	29, 89, 168, 174, 621
BspANI	GGCC	2 cut(s)	5, 68
BspCNI	CTCAG	1 cut(s)	495
BspQI	GCTCTTC	1 cut(s)	122
BsrBI	CCGCTC	1 cut(s)	31
BsrI	ACTGG	6 cut(s)	325, 350, 357, 393, 530, 605
BssMI	GATC	2 cut(s)	70, 333
BssNI	GRCGYC	1 cut(s)	77
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	2 cut(s)	223, 280
Bst6I	CTCTTC	2 cut(s)	122, 238
BstACI	GRCGYC	1 cut(s)	77
BstBAI	YACGTR	1 cut(s)	259
BstC8I	GCNNGC	2 cut(s)	86, 626
BstDEI	CTNAG	1 cut(s)	482
BstEII	GGTNACC	1 cut(s)	94
BstKTI	GATC	2 cut(s)	73, 336
BstMAI	GTCTC	2 cut(s)	370, 578
BstMBI	GATC	2 cut(s)	70, 333
BstMCI	CGRYCG	2 cut(s)	69, 73
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 173
BstNI	CCWGG	1 cut(s)	122
BstNSI	RCATGY	2 cut(s)	430, 686
BstPAI	GACNNNNGTC	1 cut(s)	353
BstPI	GGTNACC	1 cut(s)	94
BstSCI	CCNGG	2 cut(s)	103, 120
BstSFI	CTRYAG	1 cut(s)	291
BstV1I	GCAGC	1 cut(s)	652
BstV2I	GAAGAC	1 cut(s)	604
BstZI	CGGCCG	1 cut(s)	66
BsuI	GTATCC	1 cut(s)	136
BsuRI	GGCC	2 cut(s)	5, 68
BtsIMutI	CAGTG	3 cut(s)	318, 350, 386
Cac8I	GCNNGC	2 cut(s)	86, 626
Cfr13I	GGNCC	1 cut(s)	153
CseI	GACGC	1 cut(s)	85
Csp6I	GTAC	2 cut(s)	197, 470
CspCI	CAANNNNNGTGG	2 cut(s)	538, 573
CviAII	CATG	3 cut(s)	184, 427, 683
CviQI	GTAC	2 cut(s)	197, 470
DdeI	CTNAG	1 cut(s)	482
DpnI	GATC	2 cut(s)	72, 335
DpnII	GATC	2 cut(s)	70, 333
DraIII	CACNNNGTG	1 cut(s)	262
EaeI	YGGCCR	1 cut(s)	66
EagI	CGGCCG	1 cut(s)	66
Eam1104I	CTCTTC	2 cut(s)	122, 238
EarI	CTCTTC	2 cut(s)	122, 238
EciI	GGCGGA	1 cut(s)	163
EclXI	CGGCCG	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	153
Eco52I	CGGCCG	1 cut(s)	66
Eco72I	CACGTG	1 cut(s)	259
Eco88I	CYCGRG	1 cut(s)	581
Eco91I	GGTNACC	1 cut(s)	94
EcoO109I	RGGNCCY	1 cut(s)	153
EcoO65I	GGTNACC	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	120
FaeI	CATG	3 cut(s)	187, 430, 686
FaiI	YATR	9 cut(s)	185, 236, 293, 375, 428, 518, 659, 684, 703
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	3 cut(s)	183, 426, 682
Fnu4HI	GCNGC	4 cut(s)	89, 168, 622, 666
Fsp4HI	GCNGC	4 cut(s)	89, 168, 622, 666
FspBI	CTAG	2 cut(s)	570, 687
GluI	GCNGC	4 cut(s)	89, 168, 622, 666
HaeIII	GGCC	2 cut(s)	5, 68
HapII	CCGG	4 cut(s)	65, 105, 200, 329
HgaI	GACGC	1 cut(s)	85
Hin1I	GRCGYC	1 cut(s)	77
Hin1II	CATG	3 cut(s)	187, 430, 686
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HinfI	GANTC	2 cut(s)	315, 692
HpaII	CCGG	4 cut(s)	65, 105, 200, 329
HphI	GGTGA	3 cut(s)	274, 343, 521
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	4 cut(s)	75, 111, 150, 370
Hpy188III	TCNNGA	3 cut(s)	434, 557, 583
Hpy8I	GTNNAC	1 cut(s)	442
Hpy99I	CGWCG	2 cut(s)	134, 341
HpyAV	CCTTC	4 cut(s)	60, 166, 190, 680
HpyCH4III	ACNGT	2 cut(s)	223, 280
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	1 cut(s)	256
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 173
HpyF3I	CTNAG	1 cut(s)	482
HpySE526I	ACGT	1 cut(s)	258
Hsp92I	GRCGYC	1 cut(s)	77
Hsp92II	CATG	3 cut(s)	187, 430, 686
Kzo9I	GATC	2 cut(s)	70, 333
LguI	GCTCTTC	1 cut(s)	122
LmnI	GCTCC	2 cut(s)	36, 67
Lsp1109I	GCAGC	1 cut(s)	652
MaeI	CTAG	2 cut(s)	570, 687
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	2 cut(s)	72, 335
MbiI	CCGCTC	1 cut(s)	31
MboI	GATC	2 cut(s)	70, 333
MboII	GAAGA	4 cut(s)	109, 255, 423, 609
MluCI	AATT	3 cut(s)	190, 476, 636
MseI	TTAA	1 cut(s)	462
MslI	CAYNNNNRTG	2 cut(s)	182, 687
MspA1I	CMGCKG	1 cut(s)	91
MspI	CCGG	4 cut(s)	65, 105, 200, 329
MspR9I	CCNGG	2 cut(s)	105, 122
MvaI	CCWGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	2 cut(s)	85, 173
NciI	CCSGG	1 cut(s)	105
NdeII	GATC	2 cut(s)	70, 333
NlaIII	CATG	3 cut(s)	187, 430, 686
NspI	RCATGY	2 cut(s)	430, 686
PaeR7I	CTCGAG	1 cut(s)	581
PciSI	GCTCTTC	1 cut(s)	122
PfeI	GAWTC	2 cut(s)	315, 692
PkrI	GCNGC	4 cut(s)	90, 169, 623, 667
Ple19I	CGATCG	1 cut(s)	73
PmaCI	CACGTG	1 cut(s)	259
PmlI	CACGTG	1 cut(s)	259
Ppu21I	YACGTR	1 cut(s)	259
PpuMI	RGGWCCY	1 cut(s)	153
PshAI	GACNNNNGTC	1 cut(s)	353
Psp5II	RGGWCCY	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	120
PspCI	CACGTG	1 cut(s)	259
PspEI	GGTNACC	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	120
PspPI	GGNCC	1 cut(s)	153
PspPPI	RGGWCCY	1 cut(s)	153
PvuI	CGATCG	1 cut(s)	73
RsaI	GTAC	2 cut(s)	198, 471
RsaNI	GTAC	2 cut(s)	197, 470
RseI	CAYNNNNRTG	2 cut(s)	182, 687
SapI	GCTCTTC	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	4 cut(s)	89, 168, 622, 666
Sau3AI	GATC	2 cut(s)	70, 333
Sau96I	GGNCC	1 cut(s)	153
ScrFI	CCNGG	2 cut(s)	105, 122
SfcI	CTRYAG	1 cut(s)	291
Sfr274I	CTCGAG	1 cut(s)	581
SinI	GGWCC	1 cut(s)	153
SlaI	CTCGAG	1 cut(s)	581
SmiMI	CAYNNNNRTG	2 cut(s)	182, 687
SmlI	CTYRAG	2 cut(s)	557, 581
SmoI	CTYRAG	2 cut(s)	557, 581
Sse9I	AATT	3 cut(s)	190, 476, 636
SsiI	CCGC	5 cut(s)	29, 89, 168, 174, 621
SspMI	CTAG	2 cut(s)	570, 687
StyD4I	CCNGG	2 cut(s)	103, 120
TaaI	ACNGT	2 cut(s)	223, 280
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	6 cut(s)	8, 282, 336, 582, 595, 695
TaqII	GACCGA	1 cut(s)	347
TasI	AATT	3 cut(s)	190, 476, 636
TauI	GCSGC	3 cut(s)	91, 170, 624
TfiI	GAWTC	2 cut(s)	315, 692
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	3 cut(s)	325, 357, 393
TseI	GCWGC	1 cut(s)	665
TspDTI	ATGAA	4 cut(s)	172, 300, 630, 692
TspGWI	ACGGA	2 cut(s)	118, 184
TspRI	CASTG	3 cut(s)	325, 357, 393
VpaK11BI	GGWCC	1 cut(s)	153
XceI	RCATGY	2 cut(s)	430, 686
XcmI	CCANNNNNNNNNTGG	1 cut(s)	499
XhoI	CTCGAG	1 cut(s)	581
XspI	CTAG	2 cut(s)	570, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.