Rorug02G0133700

ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
11524770 .. 11530136
5367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0133700.1

Sequence Viewer

Length: 1248 bp
ATGCTGACCCTGCGACGTCGTTTCACCTCGCCTTCTTCGTGTTCCTCACATCGCATTCTTTCCGCACTAGCTACAGTTCTCGTGTTAAACGCTCTTCCGGCCGCCTCGGTTTTGGCGCCGAGATCCAATTGCTATGCCTTCGATAACTCTAGCCGCCTCGTCGATTTTAGTAGCTGGATTGGACATCATTTTGAGTATGAGCGGACGGATGCCGACTTGGTGGTTCGATTTTGCAAAGATGTGGAGAGCAGATCACAAACGGGGTATGTTGATTTTGGTCGATTTGACAAGTTCAACCACTTTGTTTCTGGTTCAGGGCATGTAGACTTTGTTCAAGGGTTTTACAATGGTGACCTGGTGAATTGTGAACGAAGTTATGATAAAATGGGGCGAACAGCTCAGGTAAACGTTATATGTGGAAATTGTTTAAATGGACAATGCACAGGTGGACTTGGGTGCATCTGCAACATCACATATGAGTCTACTTGCAGAGTCTTCCTTGAACTTGCGATTCCATGCGAGAAACCAGGTCCTCGAGTATTTAAGGGATTCACTGTTGGTTTCCACCCCCGGTCATGGGAACTTGTTTATGATGGCATGACTCAATTGGGCTTTGAAAAGCCTCACCATGAATTTAGCTTCGGGACTCAACAAATACATGTAACCCTTTATATGACTGCAATTGCTTCCCAGTCCACTTTGGTGCAAAAACCTATTGTCAAGGTCTTACCAGAAAATGGCCTGGAGGTTAGGTTATCAGGGTCAGGAGTAACAGGGAGCCCTCCTACAACTTTGTCACCCACAATGTTGAATATTGATTGGAGATGTAAAAGAACTCGTGATACTCCATATGAAGTTAATGTGACTATCCCAATCGAGGGTTATGAGCCTGTCCAGTTTATTCTTGCCAAAATGTGTGAATATAGGCAGGATCAAGATGGCGACAGTACAAAAGGATGGGCTATATTTGGAGTGTTGTCCTGCATATTCATTGTGTCATCAACTCTGTTTTGTTGTGGAGGGTTTATTTACAAGACTCAAGTTATGGGAAAGCGTGGTATTGATGCATTGCCTGGCATGACAATTGTATCTGCTTGCTTAGAAACTGTGAGTGGAGCAGGGCAAAGCTACAGCCGAGCAGAAGATCTTAATAGTTCCTTTGCCAGTGAAGCTTCTTGGGAACACTCTCCTGCTTCTTATCAAGGAACGCAGAGGCCAGCAACTGAAAGAAAATATGGTGCAATTTGA

Protein Analysis

415

Amino Acids

45.86

Weight (kDa)

6.78

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 19
AccB1I GGYRCC 1 cut(s) 115
AccB7I CCANNNNNTGG 1 cut(s) 737
AccBSI CCGCTC 1 cut(s) 202
AccI GTMKAC 2 cut(s) 324, 482
AciI CCGC 4 cut(s) 63, 102, 154, 202
AclI AACGTT 1 cut(s) 408
AclWI GGATC 2 cut(s) 117, 939
AcoI YGGCCR 1 cut(s) 99
AcsI RAATTY 1 cut(s) 632
AcyI GRCGYC 2 cut(s) 16, 116
AfaI GTAC 1 cut(s) 949
AfiI CCNNNNNNNGG 5 cut(s) 576, 577, 737, 877, 878
AflIII ACRYGT 1 cut(s) 658
AgsI TTSAA 5 cut(s) 295, 335, 503, 617, 811
AjnI CCWGG 4 cut(s) 354, 526, 741, 1072
AleI CACNNNNGTG 1 cut(s) 701
AluBI AGCT 6 cut(s) 71, 174, 398, 639, 1128, 1172
AluI AGCT 6 cut(s) 71, 174, 398, 639, 1128, 1172
AlwI GGATC 2 cut(s) 117, 939
AlwNI CAGNNNCTG 1 cut(s) 1223
Ama87I CYCGRG 1 cut(s) 534
AoxI GGCC 3 cut(s) 99, 739, 1214
ApoI RAATTY 1 cut(s) 632
AspLEI GCGC 1 cut(s) 118
AspS9I GGNCC 1 cut(s) 530
AsuC2I CCSGG 1 cut(s) 571
AsuHPI GGTGA 5 cut(s) 16, 362, 370, 617, 789
AvaI CYCGRG 1 cut(s) 534
AvaII GGWCC 1 cut(s) 530
BaeI ACNNNNGTAYC 2 cut(s) 1071, 1104
BanI GGYRCC 1 cut(s) 115
BanII GRGCYC 1 cut(s) 782
BauI CACGAG 2 cut(s) 80, 837
BbsI GAAGAC 1 cut(s) 487
BccI CCATC 3 cut(s) 587, 932, 951
BciT130I CCWGG 4 cut(s) 356, 528, 743, 1074
BcnI CCSGG 1 cut(s) 571
BfaI CTAG 2 cut(s) 68, 150
BfmI CTRYAG 2 cut(s) 72, 1129
BfoI RGCGCY 1 cut(s) 119
BglII AGATCT 1 cut(s) 1144
BisI GCNGC 2 cut(s) 102, 154
BlsI GCNGC 2 cut(s) 103, 155
Bme1390I CCNGG 5 cut(s) 356, 528, 571, 743, 1074
Bme18I GGWCC 1 cut(s) 530
BmeT110I CYCGRG 1 cut(s) 534
BmgT120I GGNCC 1 cut(s) 530
BmiI GGNNCC 2 cut(s) 117, 779
BmrFI CCNGG 5 cut(s) 356, 528, 571, 743, 1074
BmrI ACTGGG 1 cut(s) 685
BmsI GCATC 3 cut(s) 199, 468, 1054
BmuI ACTGGG 1 cut(s) 685
BpiI GAAGAC 1 cut(s) 487
BpmI CTGGAG 1 cut(s) 764
Bpu10I CCTNAGC 1 cut(s) 399
BpuEI CTTGAG 1 cut(s) 1023
BpuMI CCSGG 1 cut(s) 571
BsaHI GRCGYC 2 cut(s) 16, 116
BsaJI CCNNGG 2 cut(s) 105, 569
BsaXI ACNNNNNCTCC 2 cut(s) 737, 767
Bsc4I CCNNNNNNNGG 5 cut(s) 576, 577, 737, 877, 878
Bse1I ACTGG 3 cut(s) 691, 895, 1164
Bse3DI GCAATG 1 cut(s) 1067
BseBI CCWGG 4 cut(s) 356, 528, 743, 1074
BseDI CCNNGG 2 cut(s) 105, 569
BseGI GGATG 2 cut(s) 214, 962
BseLI CCNNNNNNNGG 5 cut(s) 576, 577, 737, 877, 878
BseMI GCAATG 1 cut(s) 1067
BseMII CTCAG 1 cut(s) 413
BseNI ACTGG 3 cut(s) 691, 895, 1164
BseX3I CGGCCG 1 cut(s) 99
Bsh1285I CGRYCG 1 cut(s) 102
BshFI GGCC 3 cut(s) 101, 741, 1216
BshNI GGYRCC 1 cut(s) 115
BsiEI CGRYCG 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 534
BsiSI CCGG 2 cut(s) 98, 571
BslFI GGGAC 1 cut(s) 658
BslI CCNNNNNNNGG 5 cut(s) 576, 577, 737, 877, 878
BsmFI GGGAC 1 cut(s) 658
BsmI GAATGC 1 cut(s) 54
BsnI GGCC 3 cut(s) 101, 741, 1216
BsoBI CYCGRG 1 cut(s) 534
Bsp1286I GDGCHC 1 cut(s) 782
Bsp143I GATC 4 cut(s) 122, 251, 931, 1144
BspACI CCGC 4 cut(s) 63, 102, 154, 202
BspANI GGCC 3 cut(s) 101, 741, 1216
BspCNI CTCAG 1 cut(s) 412
BspLI GGNNCC 2 cut(s) 117, 779
BspPI GGATC 2 cut(s) 117, 939
BspQI GCTCTTC 1 cut(s) 99
BspT107I GGYRCC 1 cut(s) 115
BsrBI CCGCTC 1 cut(s) 202
BsrDI GCAATG 1 cut(s) 1067
BsrI ACTGG 3 cut(s) 691, 895, 1164
BssECI CCNNGG 2 cut(s) 105, 569
BssMI GATC 4 cut(s) 122, 251, 931, 1144
BssNI GRCGYC 2 cut(s) 16, 116
BssSI CACGAG 2 cut(s) 80, 837
Bst2BI CACGAG 2 cut(s) 80, 837
Bst2UI CCWGG 4 cut(s) 356, 528, 743, 1074
Bst4CI ACNGT 4 cut(s) 76, 556, 947, 1108
Bst6I CTCTTC 1 cut(s) 99
BstACI GRCGYC 2 cut(s) 16, 116
BstC8I GCNNGC 2 cut(s) 1096, 1218
BstDEI CTNAG 2 cut(s) 399, 1099
BstEII GGTNACC 1 cut(s) 350
BstF5I GGATG 2 cut(s) 214, 962
BstH2I RGCGCY 1 cut(s) 119
BstHHI GCGC 1 cut(s) 118
BstKTI GATC 4 cut(s) 125, 254, 934, 1147
BstMBI GATC 4 cut(s) 122, 251, 931, 1144
BstMCI CGRYCG 1 cut(s) 102
BstMWI GCNNNNNNNGC 3 cut(s) 10, 98, 1169
BstNI CCWGG 4 cut(s) 356, 528, 743, 1074
BstNSI RCATGY 2 cut(s) 323, 662
BstPI GGTNACC 1 cut(s) 350
BstSCI CCNGG 5 cut(s) 354, 526, 569, 741, 1072
BstSFI CTRYAG 2 cut(s) 72, 1129
BstV2I GAAGAC 1 cut(s) 487
BstX2I RGATCY 2 cut(s) 122, 1144
BstYI RGATCY 2 cut(s) 122, 1144
BstZI CGGCCG 1 cut(s) 99
BsuRI GGCC 3 cut(s) 101, 741, 1216
BtgZI GCGATG 1 cut(s) 35
BtsCI GGATG 2 cut(s) 214, 962
BtsIMutI CAGTG 2 cut(s) 552, 1171
Cac8I GCNNGC 2 cut(s) 1096, 1218
CaiI CAGNNNCTG 1 cut(s) 1223
CfoI GCGC 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 530
CsiI ACCWGGT 2 cut(s) 354, 526
Csp6I GTAC 1 cut(s) 948
CviAII CATG 7 cut(s) 320, 516, 576, 598, 629, 659, 1078
CviQI GTAC 1 cut(s) 948
DdeI CTNAG 2 cut(s) 399, 1099
DinI GGCGCC 1 cut(s) 117
DpnI GATC 4 cut(s) 124, 253, 933, 1146
DpnII GATC 4 cut(s) 122, 251, 931, 1144
DraI TTTAAA 1 cut(s) 429
EaeI YGGCCR 1 cut(s) 99
EagI CGGCCG 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
EclXI CGGCCG 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 782
Eco47I GGWCC 1 cut(s) 530
Eco52I CGGCCG 1 cut(s) 99
Eco88I CYCGRG 1 cut(s) 534
Eco91I GGTNACC 1 cut(s) 350
EcoO109I RGGNCCY 1 cut(s) 530
EcoO65I GGTNACC 1 cut(s) 350
EcoRII CCWGG 4 cut(s) 354, 526, 741, 1072
EcoT22I ATGCAT 1 cut(s) 1069
EcoT38I GRGCYC 1 cut(s) 782
EgeI GGCGCC 1 cut(s) 117
EheI GGCGCC 1 cut(s) 117
FaeI CATG 7 cut(s) 323, 519, 579, 601, 632, 662, 1081
FaqI GGGAC 1 cut(s) 658
FatI CATG 7 cut(s) 319, 515, 575, 597, 628, 658, 1077
FauNDI CATATG 2 cut(s) 475, 850
FblI GTMKAC 2 cut(s) 324, 482
Fnu4HI GCNGC 2 cut(s) 102, 154
FokI GGATG 2 cut(s) 221, 969
FriOI GRGCYC 1 cut(s) 782
Fsp4HI GCNGC 2 cut(s) 102, 154
FspBI CTAG 2 cut(s) 68, 150
GlaI GCGC 1 cut(s) 117
GluI GCNGC 2 cut(s) 102, 154
GsuI CTGGAG 1 cut(s) 764
HaeII RGCGCY 1 cut(s) 119
HaeIII GGCC 3 cut(s) 101, 741, 1216
HapII CCGG 2 cut(s) 98, 571
HhaI GCGC 1 cut(s) 118
Hin1I GRCGYC 2 cut(s) 16, 116
Hin1II CATG 7 cut(s) 323, 519, 579, 601, 632, 662, 1081
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HindIII AAGCTT 1 cut(s) 1170
HinfI GANTC 7 cut(s) 479, 492, 511, 549, 601, 646, 1036
HpaII CCGG 2 cut(s) 98, 571
HphI GGTGA 5 cut(s) 16, 362, 370, 617, 789
Hpy166II GTNNAC 6 cut(s) 325, 368, 406, 449, 483, 696
Hpy188III TCNNGA 4 cut(s) 643, 765, 839, 935
Hpy8I GTNNAC 6 cut(s) 325, 368, 406, 449, 483, 696
Hpy99I CGWCG 3 cut(s) 18, 21, 164
HpyAV CCTTC 2 cut(s) 42, 148
HpyCH4III ACNGT 4 cut(s) 76, 556, 947, 1108
HpyCH4IV ACGT 2 cut(s) 16, 408
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 98, 1169
HpyF3I CTNAG 2 cut(s) 399, 1099
HpySE526I ACGT 2 cut(s) 16, 408
Hsp92I GRCGYC 2 cut(s) 16, 116
Hsp92II CATG 7 cut(s) 323, 519, 579, 601, 632, 662, 1081
HspAI GCGC 1 cut(s) 116
KasI GGCGCC 1 cut(s) 115
Kzo9I GATC 4 cut(s) 122, 251, 931, 1144
LguI GCTCTTC 1 cut(s) 99
LmnI GCTCC 2 cut(s) 777, 1115
LweI GCATC 3 cut(s) 199, 468, 1054
MabI ACCWGGT 2 cut(s) 354, 526
MaeI CTAG 2 cut(s) 68, 150
MaeII ACGT 2 cut(s) 16, 408
MaeIII GTNAC 5 cut(s) 350, 661, 769, 795, 862
MalI GATC 4 cut(s) 124, 253, 933, 1146
MbiI CCGCTC 1 cut(s) 202
MboI GATC 4 cut(s) 122, 251, 931, 1144
MboII GAAGA 4 cut(s) 27, 86, 487, 1154
MfeI CAATTG 4 cut(s) 127, 605, 681, 1083
MflI RGATCY 2 cut(s) 122, 1144
MhlI GDGCHC 1 cut(s) 782
MluCI AATT 8 cut(s) 127, 361, 421, 605, 632, 681, 1083, 1242
Mly113I GGCGCC 1 cut(s) 116
MlyI GAGTC 5 cut(s) 488, 501, 595, 640, 1030
Mph1103I ATGCAT 1 cut(s) 1069
MseI TTAA 5 cut(s) 86, 428, 543, 858, 1149
MslI CAYNNNNRTG 1 cut(s) 701
MspI CCGG 2 cut(s) 98, 571
MspR9I CCNGG 5 cut(s) 356, 528, 571, 743, 1074
MunI CAATTG 4 cut(s) 127, 605, 681, 1083
Mva1269I GAATGC 1 cut(s) 54
MvaI CCWGG 4 cut(s) 356, 528, 743, 1074
MwoI GCNNNNNNNGC 3 cut(s) 10, 98, 1169
NarI GGCGCC 1 cut(s) 116
NciI CCSGG 1 cut(s) 571
NdeI CATATG 2 cut(s) 475, 850
NdeII GATC 4 cut(s) 122, 251, 931, 1144
NlaIII CATG 7 cut(s) 323, 519, 579, 601, 632, 662, 1081
NlaIV GGNNCC 2 cut(s) 117, 779
NmeAIII GCCGAG 2 cut(s) 144, 1160
NmuCI GTSAC 3 cut(s) 350, 795, 862
NsiI ATGCAT 1 cut(s) 1069
NspI RCATGY 2 cut(s) 323, 662
OliI CACNNNNGTG 1 cut(s) 701
PaeR7I CTCGAG 1 cut(s) 534
PciI ACATGT 1 cut(s) 658
PciSI GCTCTTC 1 cut(s) 99
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PctI GAATGC 1 cut(s) 54
PfeI GAWTC 2 cut(s) 511, 549
PflMI CCANNNNNTGG 1 cut(s) 737
PkrI GCNGC 2 cut(s) 103, 155
PleI GAGTC 5 cut(s) 487, 500, 595, 640, 1030
PluTI GGCGCC 1 cut(s) 119
PpsI GAGTC 5 cut(s) 487, 500, 595, 640, 1030
PpuMI RGGWCCY 1 cut(s) 530
PscI ACATGT 1 cut(s) 658
Psp1406I AACGTT 1 cut(s) 408
Psp5II RGGWCCY 1 cut(s) 530
Psp6I CCWGG 4 cut(s) 354, 526, 741, 1072
PspEI GGTNACC 1 cut(s) 350
PspGI CCWGG 4 cut(s) 354, 526, 741, 1072
PspN4I GGNNCC 2 cut(s) 117, 779
PspPI GGNCC 1 cut(s) 530
PspPPI RGGWCCY 1 cut(s) 530
PspXI VCTCGAGB 1 cut(s) 534
PsrI GAACNNNNNNTAC 4 cut(s) 315, 347, 826, 858
PstNI CAGNNNCTG 1 cut(s) 1223
PsuI RGATCY 2 cut(s) 122, 1144
RsaI GTAC 1 cut(s) 949
RsaNI GTAC 1 cut(s) 948
RseI CAYNNNNRTG 1 cut(s) 701
SapI GCTCTTC 1 cut(s) 99
SaqAI TTAA 5 cut(s) 86, 428, 543, 858, 1149
SatI GCNGC 2 cut(s) 102, 154
Sau3AI GATC 4 cut(s) 122, 251, 931, 1144
Sau96I GGNCC 1 cut(s) 530
SchI GAGTC 5 cut(s) 488, 501, 595, 640, 1030
ScrFI CCNGG 5 cut(s) 356, 528, 571, 743, 1074
SduI GDGCHC 1 cut(s) 782
SexAI ACCWGGT 2 cut(s) 354, 526
SfaNI GCATC 3 cut(s) 199, 468, 1054
SfcI CTRYAG 2 cut(s) 72, 1129
SfoI GGCGCC 1 cut(s) 117
Sfr274I CTCGAG 1 cut(s) 534
SinI GGWCC 1 cut(s) 530
SlaI CTCGAG 1 cut(s) 534
SmiMI CAYNNNNRTG 1 cut(s) 701
SmlI CTYRAG 2 cut(s) 534, 1038
SmoI CTYRAG 2 cut(s) 534, 1038
Sse9I AATT 8 cut(s) 127, 361, 421, 605, 632, 681, 1083, 1242
SsiI CCGC 4 cut(s) 63, 102, 154, 202
SspDI GGCGCC 1 cut(s) 115
SspI AATATT 1 cut(s) 814
SspMI CTAG 2 cut(s) 68, 150
StyD4I CCNGG 5 cut(s) 354, 526, 569, 741, 1072
TaaI ACNGT 4 cut(s) 76, 556, 947, 1108
TaiI ACGT 2 cut(s) 19, 411
TaqI TCGA 6 cut(s) 141, 162, 226, 280, 535, 876
TasI AATT 8 cut(s) 127, 361, 421, 605, 632, 681, 1083, 1242
TatI WGTACW 1 cut(s) 947
TauI GCSGC 2 cut(s) 104, 156
TfiI GAWTC 2 cut(s) 511, 549
Tru1I TTAA 5 cut(s) 86, 428, 543, 858, 1149
Tru9I TTAA 5 cut(s) 86, 428, 543, 858, 1149
TscAI CASTG 2 cut(s) 559, 1171
TseFI GTSAC 3 cut(s) 350, 795, 862
Tsp45I GTSAC 3 cut(s) 350, 795, 862
TspDTI ATGAA 3 cut(s) 645, 867, 979
TspGWI ACGGA 1 cut(s) 221
TspRI CASTG 2 cut(s) 559, 1171
Van91I CCANNNNNTGG 1 cut(s) 737
VpaK11BI GGWCC 1 cut(s) 530
XapI RAATTY 1 cut(s) 632
XceI RCATGY 2 cut(s) 323, 662
XcmI CCANNNNNNNNNTGG 1 cut(s) 305
XhoI CTCGAG 1 cut(s) 534
XmiI GTMKAC 2 cut(s) 324, 482
XspI CTAG 2 cut(s) 68, 150
ZraI GACGTC 1 cut(s) 17
Zsp2I ATGCAT 1 cut(s) 1069
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.