Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007111

Physical Location & Seq

Genomic Coordinates Reverse (-)

17397680 .. 17400729

Gene Structure 3050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG191100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGACGAGATGGCCGCCTATTACCCTCCACCGCCTCCGCCACCAGGCTCCGTCCACTATCCATACTACCACCACCAGCCACCTCAACCGCCTGCCCCCGTGGCCCCTCCGCCGCCGCCGCAGCAGCACCACCACCACCACTTGGTTCATCAGCCCTACTACCCTCCCCAGCCTCAGCCTCAGCCTTACGCTCCCTACGCGCCGCCACTCGTCGCCCAGGCAGCCTACGACGAGGTCCGGACCCTCTTCGTGGCCGGCCTACCCGAAGATGTCAAGCCCCGTGAAATCTACAACCTCTTCCGCGAGTTTCCCGGTTACGAGTCCTCTCACCTCCGAACCCCCACCGAGAAAACTCAGCCTTTTGCGTTTGCGGTGTTCTTGGACCAGCAATCTGCGATCGGAGCAATGCAAGCACTGAATGGGATGGTATTTGATCTTGAGAAGGGGTCGACATTATATATAGATCTAGCAAAATCTAATTCTAGGTCCAAACGCTCAAGAACAGACGATGAAAGATCTGGCTCGGATAAGAAAGCTAGAGGTTCATCATATTCAAGGGCCACTTCTGATCCTGGTGTTGGCAGCATTCACATGCCTGGAATGGGTAATTCTGCTTACAACATGATTGGTTATCCATCTGCACCAAGTCATGGCAGCTTCAGTGGCAGTGGTGTAAATGAGCCAATAGCCTCAAACATGAATAGTTCTTCAGCACAACATTTTCCACAAAACAATACTCCATGCCCAACACTTTTTGTGGCTAATTTGGGGCCAACTTGTACGGAGCAAGAGCTAGTTCAAGTATTTTCGAGGTGCCCTGGGTTTATAAAATTGAAGATGCAGAGCACATATGGGGCTCCAGTTGCATTTGTTGATTTTCAGGATACTGCTAGTTCAACTGGCGCACTGGGTCATCTGCAGGGCACAATTCTCTACTCGTCAACATCTGGAGAGGGCATGAGATTAGAGTTTGCCAAATCACGAATGGGAATGCGGAAGAAGCCGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035239 GO:0035295 GO:0042127 GO:0042802 GO:0042803 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046983 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048660 GO:0048661 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051147 GO:0051148 GO:0051150 GO:0051151 GO:0051171 GO:0051252 GO:0055123 GO:0060255 GO:0065007 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

336

Amino Acids

36.73

Weight (kDa)

7.79

Isoelectric Point (pI)

59.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	82 - 145	1.4e-11	RNA recognition motif
RRM_1	PF00076	251 - 314	2e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42240 AT2G42240 AT2G42240
fragaria_vesca	FvH4_1g16380 FvH4_1g16380
malus_domestica	MD02G1176300.v1.1 MD15G1286700.v1.1
prunus_persica	Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1
pyrus_communis	pycom02g14250 pycom15g25000
rosa_chinensis	RchiOBHm_Chr2g0106251
rosa_laevigata	RLG00000017483
rosa_multiflora	Rmu_sc0008603.1_g000013
rosa_roxburghii	Rroxscaffold_2G00137330
rosa_rugosa	Rorug02G0133700 Rorug02G0133800
rosa_samantha	Rh2AG184900 Rh2BG195200 Rh2CG190000 Rh2DG191100
rosa_wichuraiana	Rw2G014440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	827
AccB1I	GGYRCC	1 cut(s)	813
AccB7I	CCANNNNNTGG	2 cut(s)	142, 650
AccI	GTMKAC	1 cut(s)	449
AccII	CGCG	2 cut(s)	200, 303
AccIII	TCCGGA	1 cut(s)	237
AclWI	GGATC	1 cut(s)	563
AcoI	YGGCCR	2 cut(s)	12, 252
AcuI	CTGAAG	2 cut(s)	643, 693
AfaI	GTAC	1 cut(s)	781
AfiI	CCNNNNNNNGG	6 cut(s)	44, 142, 250, 578, 602, 650
AgsI	TTSAA	4 cut(s)	555, 800, 835, 897
AjnI	CCWGG	5 cut(s)	43, 216, 571, 595, 817
AluBI	AGCT	3 cut(s)	536, 657, 793
AluI	AGCT	3 cut(s)	536, 657, 793
Alw21I	GWGCWC	1 cut(s)	848
AlwI	GGATC	1 cut(s)	563
Aor13HI	TCCGGA	1 cut(s)	237
AoxI	GGCC	6 cut(s)	12, 102, 252, 256, 558, 770
ApeKI	GCWGC	5 cut(s)	121, 124, 221, 582, 654
AspLEI	GCGC	2 cut(s)	202, 905
AspS9I	GGNCC	7 cut(s)	103, 235, 240, 382, 486, 558, 770
AsuC2I	CCSGG	1 cut(s)	312
AsuHPI	GGTGA	1 cut(s)	320
AvaII	GGWCC	4 cut(s)	235, 240, 382, 486
BaeGI	GKGCMC	2 cut(s)	818, 926
BanI	GGYRCC	1 cut(s)	813
BanII	GRGCYC	1 cut(s)	859
Bbv12I	GWGCWC	1 cut(s)	848
BbvCI	CCTCAGC	2 cut(s)	174, 180
BbvI	GCAGC	5 cut(s)	133, 136, 233, 594, 666
BccI	CCATC	3 cut(s)	4, 418, 643
BciT130I	CCWGG	5 cut(s)	45, 218, 573, 597, 819
BciVI	GTATCC	1 cut(s)	877
BcnI	CCSGG	1 cut(s)	312
BfaI	CTAG	5 cut(s)	467, 483, 537, 794, 891
BfmI	CTRYAG	1 cut(s)	917
BfuI	GTATCC	1 cut(s)	877
BglI	GCCNNNNNGGC	1 cut(s)	101
BglII	AGATCT	2 cut(s)	463, 515
Bme1390I	CCNGG	6 cut(s)	45, 218, 312, 573, 597, 819
Bme18I	GGWCC	4 cut(s)	235, 240, 382, 486
BmgT120I	GGNCC	7 cut(s)	103, 235, 240, 382, 486, 558, 770
BmiI	GGNNCC	6 cut(s)	49, 105, 242, 771, 815, 858
BmrFI	CCNGG	6 cut(s)	45, 218, 312, 573, 597, 819
BmrI	ACTGGG	1 cut(s)	917
BmsI	GCATC	1 cut(s)	828
BmuI	ACTGGG	1 cut(s)	917
BpmI	CTGGAG	2 cut(s)	843, 969
Bpu10I	CCTNAGC	2 cut(s)	174, 180
BpuEI	CTTGAG	2 cut(s)	458, 481
BpuMI	CCSGG	1 cut(s)	312
BsaJI	CCNNGG	4 cut(s)	99, 216, 817, 818
BsaWI	WCCGGW	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	6 cut(s)	44, 142, 250, 578, 602, 650
Bse118I	RCCGGY	1 cut(s)	254
Bse1I	ACTGG	3 cut(s)	860, 904, 912
Bse3DI	GCAATG	1 cut(s)	411
BseAI	TCCGGA	1 cut(s)	237
BseBI	CCWGG	5 cut(s)	45, 218, 573, 597, 819
BseDI	CCNNGG	4 cut(s)	99, 216, 817, 818
BseGI	GGATG	1 cut(s)	429
BseLI	CCNNNNNNNGG	6 cut(s)	44, 142, 250, 578, 602, 650
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	3 cut(s)	188, 194, 368
BseNI	ACTGG	3 cut(s)	860, 904, 912
BseSI	GKGCMC	2 cut(s)	818, 926
BseXI	GCAGC	5 cut(s)	133, 136, 233, 594, 666
BseYI	CCCAGC	1 cut(s)	168
BsgI	GTGCAG	1 cut(s)	624
Bsh1236I	CGCG	2 cut(s)	200, 303
Bsh1285I	CGRYCG	1 cut(s)	399
BshFI	GGCC	6 cut(s)	14, 104, 254, 258, 560, 772
BshNI	GGYRCC	1 cut(s)	813
BsiEI	CGRYCG	1 cut(s)	399
BsiHKAI	GWGCWC	1 cut(s)	848
BsiSI	CCGG	3 cut(s)	238, 255, 312
BslI	CCNNNNNNNGG	6 cut(s)	44, 142, 250, 578, 602, 650
BsmI	GAATGC	2 cut(s)	585, 996
BsnI	GGCC	6 cut(s)	14, 104, 254, 258, 560, 772
Bsp1286I	GDGCHC	4 cut(s)	818, 848, 859, 926
Bsp13I	TCCGGA	1 cut(s)	237
Bsp143I	GATC	5 cut(s)	396, 433, 463, 515, 568
BspANI	GGCC	6 cut(s)	14, 104, 254, 258, 560, 772
BspCNI	CTCAG	3 cut(s)	187, 193, 367
BspEI	TCCGGA	1 cut(s)	237
BspFNI	CGCG	2 cut(s)	200, 303
BspLI	GGNNCC	6 cut(s)	49, 105, 242, 771, 815, 858
BspMAI	CTGCAG	1 cut(s)	921
BspPI	GGATC	1 cut(s)	563
BspT107I	GGYRCC	1 cut(s)	813
BsrDI	GCAATG	1 cut(s)	411
BsrFI	RCCGGY	1 cut(s)	254
BsrI	ACTGG	3 cut(s)	860, 904, 912
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	4 cut(s)	99, 216, 817, 818
BssMI	GATC	5 cut(s)	396, 433, 463, 515, 568
Bst2UI	CCWGG	5 cut(s)	45, 218, 573, 597, 819
Bst6I	CTCTTC	2 cut(s)	251, 302
BstC8I	GCNNGC	3 cut(s)	93, 256, 411
BstDEI	CTNAG	3 cut(s)	174, 180, 354
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	429
BstFNI	CGCG	2 cut(s)	200, 303
BstHHI	GCGC	2 cut(s)	202, 905
BstKTI	GATC	5 cut(s)	399, 436, 466, 518, 571
BstMBI	GATC	5 cut(s)	396, 433, 463, 515, 568
BstMCI	CGRYCG	1 cut(s)	399
BstNI	CCWGG	5 cut(s)	45, 218, 573, 597, 819
BstNSI	RCATGY	1 cut(s)	595
BstSCI	CCNGG	6 cut(s)	43, 216, 310, 571, 595, 817
BstSFI	CTRYAG	1 cut(s)	917
BstSLI	GKGCMC	2 cut(s)	818, 926
BstUI	CGCG	2 cut(s)	200, 303
BstV1I	GCAGC	5 cut(s)	133, 136, 233, 594, 666
BstX2I	RGATCY	2 cut(s)	463, 515
BstYI	RGATCY	2 cut(s)	463, 515
BsuI	GTATCC	1 cut(s)	877
BsuRI	GGCC	6 cut(s)	14, 104, 254, 258, 560, 772
BtgI	CCRYGG	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	429
BtsI	GCAGTG	1 cut(s)	673
BtsIMutI	CAGTG	4 cut(s)	413, 667, 673, 905
Cac8I	GCNNGC	3 cut(s)	93, 256, 411
CfoI	GCGC	2 cut(s)	202, 905
Cfr10I	RCCGGY	1 cut(s)	254
Cfr13I	GGNCC	7 cut(s)	103, 235, 240, 382, 486, 558, 770
Csp6I	GTAC	1 cut(s)	780
CviAII	CATG	6 cut(s)	592, 622, 650, 697, 741, 958
CviQI	GTAC	1 cut(s)	780
DdeI	CTNAG	3 cut(s)	174, 180, 354
DpnI	GATC	5 cut(s)	398, 435, 465, 517, 570
DpnII	GATC	5 cut(s)	396, 433, 463, 515, 568
EaeI	YGGCCR	2 cut(s)	12, 252
Eam1104I	CTCTTC	2 cut(s)	251, 302
EarI	CTCTTC	2 cut(s)	251, 302
EciI	GGCGGA	2 cut(s)	27, 99
Eco24I	GRGCYC	1 cut(s)	859
Eco47I	GGWCC	4 cut(s)	235, 240, 382, 486
Eco57I	CTGAAG	2 cut(s)	643, 693
EcoRII	CCWGG	5 cut(s)	43, 216, 571, 595, 817
EcoT38I	GRGCYC	1 cut(s)	859
FaeI	CATG	6 cut(s)	595, 625, 653, 700, 744, 961
FalI	AAGNNNNNCTT	2 cut(s)	547, 579
FatI	CATG	6 cut(s)	591, 621, 649, 696, 740, 957
FauNDI	CATATG	1 cut(s)	850
FblI	GTMKAC	1 cut(s)	449
FokI	GGATG	1 cut(s)	436
FriOI	GRGCYC	1 cut(s)	859
FseI	GGCCGGCC	1 cut(s)	258
FspBI	CTAG	5 cut(s)	467, 483, 537, 794, 891
GlaI	GCGC	2 cut(s)	201, 904
GsaI	CCCAGC	1 cut(s)	172
GsuI	CTGGAG	2 cut(s)	843, 969
HaeIII	GGCC	6 cut(s)	14, 104, 254, 258, 560, 772
HapII	CCGG	3 cut(s)	238, 255, 312
HhaI	GCGC	2 cut(s)	202, 905
Hin1II	CATG	6 cut(s)	595, 625, 653, 700, 744, 961
Hin6I	GCGC	2 cut(s)	200, 903
HinP1I	GCGC	2 cut(s)	200, 903
HincII	GTYRAC	2 cut(s)	450, 942
HindII	GTYRAC	2 cut(s)	450, 942
HinfI	GANTC	1 cut(s)	320
HpaII	CCGG	3 cut(s)	238, 255, 312
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	3 cut(s)	55, 450, 942
Hpy188I	TCNGA	4 cut(s)	335, 401, 526, 568
Hpy188III	TCNNGA	6 cut(s)	238, 437, 498, 881, 948, 981
Hpy8I	GTNNAC	3 cut(s)	55, 450, 942
Hpy99I	CGWCG	2 cut(s)	215, 233
HpyAV	CCTTC	1 cut(s)	436
HpyCH4V	TGCA	5 cut(s)	409, 641, 841, 866, 919
HpyF3I	CTNAG	3 cut(s)	174, 180, 354
Hsp92II	CATG	6 cut(s)	595, 625, 653, 700, 744, 961
HspAI	GCGC	2 cut(s)	200, 903
Kpn2I	TCCGGA	1 cut(s)	237
KroI	GCCGGC	1 cut(s)	254
KroNI	GCCGGC	1 cut(s)	256
Kzo9I	GATC	5 cut(s)	396, 433, 463, 515, 568
LmnI	GCTCC	5 cut(s)	53, 196, 401, 784, 862
Lsp1109I	GCAGC	5 cut(s)	133, 136, 233, 594, 666
LweI	GCATC	1 cut(s)	828
MaeI	CTAG	5 cut(s)	467, 483, 537, 794, 891
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	5 cut(s)	398, 435, 465, 517, 570
MboI	GATC	5 cut(s)	396, 433, 463, 515, 568
MboII	GAAGA	6 cut(s)	238, 278, 289, 699, 847, 1009
MflI	RGATCY	2 cut(s)	463, 515
MhlI	GDGCHC	4 cut(s)	818, 848, 859, 926
MluCI	AATT	5 cut(s)	478, 607, 763, 830, 927
MlyI	GAGTC	1 cut(s)	329
MroI	TCCGGA	1 cut(s)	237
MroNI	GCCGGC	1 cut(s)	254
MslI	CAYNNNNRTG	1 cut(s)	590
MspI	CCGG	3 cut(s)	238, 255, 312
MspR9I	CCNGG	6 cut(s)	45, 218, 312, 573, 597, 819
Mva1269I	GAATGC	2 cut(s)	585, 996
MvaI	CCWGG	5 cut(s)	45, 218, 573, 597, 819
MvnI	CGCG	2 cut(s)	200, 303
NaeI	GCCGGC	1 cut(s)	256
NciI	CCSGG	1 cut(s)	312
NdeI	CATATG	1 cut(s)	850
NdeII	GATC	5 cut(s)	396, 433, 463, 515, 568
NgoMIV	GCCGGC	1 cut(s)	254
NlaIII	CATG	6 cut(s)	595, 625, 653, 700, 744, 961
NlaIV	GGNNCC	6 cut(s)	49, 105, 242, 771, 815, 858
NspI	RCATGY	1 cut(s)	595
PasI	CCCWGGG	1 cut(s)	818
PctI	GAATGC	2 cut(s)	585, 996
PdiI	GCCGGC	1 cut(s)	256
PflFI	GACNNNGTC	1 cut(s)	233
PflMI	CCANNNNNTGG	2 cut(s)	142, 650
Ple19I	CGATCG	1 cut(s)	399
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
PsiI	TTATAA	1 cut(s)	827
Psp6I	CCWGG	5 cut(s)	43, 216, 571, 595, 817
PspFI	CCCAGC	1 cut(s)	168
PspGI	CCWGG	5 cut(s)	43, 216, 571, 595, 817
PspN4I	GGNNCC	6 cut(s)	49, 105, 242, 771, 815, 858
PspPI	GGNCC	7 cut(s)	103, 235, 240, 382, 486, 558, 770
PstI	CTGCAG	1 cut(s)	921
PsuI	RGATCY	2 cut(s)	463, 515
PsyI	GACNNNGTC	1 cut(s)	233
PvuI	CGATCG	1 cut(s)	399
RigI	GGCCGGCC	1 cut(s)	258
RsaI	GTAC	1 cut(s)	781
RsaNI	GTAC	1 cut(s)	780
RseI	CAYNNNNRTG	1 cut(s)	590
SalI	GTCGAC	1 cut(s)	448
Sau3AI	GATC	5 cut(s)	396, 433, 463, 515, 568
Sau96I	GGNCC	7 cut(s)	103, 235, 240, 382, 486, 558, 770
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	6 cut(s)	45, 218, 312, 573, 597, 819
SduI	GDGCHC	4 cut(s)	818, 848, 859, 926
SfaNI	GCATC	1 cut(s)	828
SfcI	CTRYAG	1 cut(s)	917
SinI	GGWCC	4 cut(s)	235, 240, 382, 486
SmiMI	CAYNNNNRTG	1 cut(s)	590
SmlI	CTYRAG	2 cut(s)	437, 496
SmoI	CTYRAG	2 cut(s)	437, 496
Sse9I	AATT	5 cut(s)	478, 607, 763, 830, 927
SspMI	CTAG	5 cut(s)	467, 483, 537, 794, 891
StyD4I	CCNGG	6 cut(s)	43, 216, 310, 571, 595, 817
TaqI	TCGA	2 cut(s)	449, 809
TasI	AATT	5 cut(s)	478, 607, 763, 830, 927
TauI	GCSGC	5 cut(s)	17, 115, 118, 121, 205
TscAI	CASTG	4 cut(s)	420, 667, 673, 912
TseI	GCWGC	5 cut(s)	121, 124, 221, 582, 654
TspDTI	ATGAA	4 cut(s)	137, 525, 534, 713
TspGWI	ACGGA	2 cut(s)	40, 797
TspRI	CASTG	4 cut(s)	420, 667, 673, 912
Tth111I	GACNNNGTC	1 cut(s)	233
Van91I	CCANNNNNTGG	2 cut(s)	142, 650
VpaK11BI	GGWCC	4 cut(s)	235, 240, 382, 486
XceI	RCATGY	1 cut(s)	595
XcmI	CCANNNNNNNNNTGG	1 cut(s)	982
XmiI	GTMKAC	1 cut(s)	449
XspI	CTAG	5 cut(s)	467, 483, 537, 794, 891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.