Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007111

Physical Location & Seq

Genomic Coordinates Reverse (-)

11536238 .. 11538788

Gene Structure 2551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0133800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGGATGACCTGATTAAATCTGTATATTTGGTGCTGCATTATTCTGACACTAACGGCGTAGGCGGGTTATTACATAAAATACAAATCAGCAAAGATGGAAAAGTTATCACTAAATCCACAGAAGATAAGCCTGAACCCCCTGCAAGGAAGTTGTTTGATGAAACAGAAATATCATGGGTGAACGATACAGAGCAGCAGAAGCCGGGGCAAGTAGCATATATTTTTGATCCAAAGGCATCTGGAGACTTGGTTAAATTCAATCGGCCTTATATATTCGCGACATTTCCAAATATTATTGCAGCGCATGGCAGGCTTTATCATCTGGCAACTTTGTTAGCCCACAAACCGTGTGTGCCCATGCCCTTTGAGCTATATGATCCCACCACCAACTCTTGGGATCCTTTAACTCCTGTACCTCATTTTGCATTCATCCCACAATCTTCACTACCTCGCAGGGAGTTGATTGGTTATGCTGTTTGGGGCAGCTGTATTTTGCTTTCATTATGGTACCCTTCCATGAAGTTCAAACCAGCACATTTCGTACCAGTAGTTTTCAATGCAGAATCGGAAACATGGCATCAAGTCAATTTCGATCAAAAACAACGGATACAACGTTTTCCTTTCTTTGGGAAGGCTGCTGTTAAGTCTGGTTCAGAGGAGGATGGTACTCTTATTTACTCTCTAACAACACCTTACGAGTTGGAAGGCTTGAAGATTATTCAAAGTGCGAAATATAGGTATTATTCTAGCATAACAGAGTGTTGGGCTCCTTTGGGTGACTTGGAGTTCTGTTTAGTCCAGACTAAGAGCTATGGGGCTAATAGGTATCAACCTCTTTTTATCACCACGTTCAAAATCATCCATAAAGAAGGGCGGAAGAGCCATATTGAGACCATACATTCTACTCTCCAGTTTGTGAGCTCTAAAGGTTATGGTCAATTCTGGATTACATTTGGCTACTGTCCAGATTATGAACCCAAAGAAGCCATGTTAACTACGACAAAGGACATCCAAAAAGAGAGAGACAGGATAAAGGACAGCTCTCAGGAGGTTGACTGTGACATTCTAGATTTTGAACTCGGAGGAGAGAGTGCGACTAAGATAAAGGGGGAGACAAATGAGATAATAAACAGCCCCGGCAAGGTTGACTCAAACTTACGGGATTTTGAACCCAAAGAGAGTGTGATTAACAGGAAAAAGGCGAGAAGCCTTAAGAGAAAGGTTAAACGGTCAGAGAAAAGAGAACTAAACGAGACTCCTACATTGTCTCTCTTGTCAAACATCAAGTCTCTACAGTTAAATTGTACGCAAGAGGAAGAGCATTTGTCCCCATTGCTTGTCTCATCATCCTTTTCAGTGGTTTGCTCTATGGATTCTTCTCTCTTCCAGATACTGGTGATGCGCTATTCCTTGGGAAATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035239 GO:0035295 GO:0042127 GO:0042802 GO:0042803 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046983 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048660 GO:0048661 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051147 GO:0051148 GO:0051150 GO:0051151 GO:0051171 GO:0051252 GO:0055123 GO:0060255 GO:0065007 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

474

Amino Acids

53.99

Weight (kDa)

7.17

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42240 AT2G42240 AT2G42240
fragaria_vesca	FvH4_1g16380 FvH4_1g16380
malus_domestica	MD02G1176300.v1.1 MD15G1286700.v1.1
prunus_persica	Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1
pyrus_communis	pycom02g14250 pycom15g25000
rosa_chinensis	RchiOBHm_Chr2g0106251
rosa_laevigata	RLG00000017483
rosa_multiflora	Rmu_sc0008603.1_g000013
rosa_roxburghii	Rroxscaffold_2G00137330
rosa_rugosa	Rorug02G0133700 Rorug02G0133800
rosa_samantha	Rh2AG184900 Rh2BG195200 Rh2CG190000 Rh2DG191100
rosa_wichuraiana	Rw2G014440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	507
AccB1I	GGYRCC	1 cut(s)	507
AccB7I	CCANNNNNTGG	2 cut(s)	393, 1393
AccII	CGCG	1 cut(s)	278
AciI	CCGC	2 cut(s)	63, 874
AclI	AACGTT	1 cut(s)	613
AclWI	GGATC	4 cut(s)	221, 371, 392, 405
AcsI	RAATTY	1 cut(s)	254
AfaI	GTAC	5 cut(s)	414, 509, 543, 667, 1306
AfiI	CCNNNNNNNGG	5 cut(s)	144, 393, 626, 1141, 1393
AflII	CTTAAG	1 cut(s)	1211
AgsI	TTSAA	8 cut(s)	259, 526, 556, 712, 722, 853, 1076, 1169
AluBI	AGCT	5 cut(s)	370, 486, 810, 921, 1041
AluI	AGCT	5 cut(s)	370, 486, 810, 921, 1041
Alw21I	GWGCWC	1 cut(s)	923
Alw26I	GTCTC	8 cut(s)	237, 884, 1017, 1106, 1247, 1272, 1293, 1345
AlwI	GGATC	4 cut(s)	221, 371, 392, 405
AlwNI	CAGNNNCTG	1 cut(s)	1393
AoxI	GGCC	1 cut(s)	263
ApeKI	GCWGC	5 cut(s)	34, 193, 299, 483, 635
ApoI	RAATTY	1 cut(s)	254
ArsI	GACNNNNNNTTYG	2 cut(s)	1271, 1303
Asp718I	GGTACC	1 cut(s)	507
AspLEI	GCGC	2 cut(s)	304, 1404
AsuC2I	CCSGG	2 cut(s)	204, 1137
AsuHPI	GGTGA	4 cut(s)	190, 788, 835, 1408
BaeGI	GKGCMC	1 cut(s)	357
BaeI	ACNNNNGTAYC	2 cut(s)	396, 429
BamHI	GGATCC	1 cut(s)	397
BanI	GGYRCC	1 cut(s)	507
BanII	GRGCYC	2 cut(s)	769, 923
Bbv12I	GWGCWC	1 cut(s)	923
BbvI	GCAGC	5 cut(s)	21, 205, 311, 495, 622
BccI	CCATC	2 cut(s)	89, 656
BceAI	ACGGC	1 cut(s)	70
BciVI	GTATCC	1 cut(s)	600
BcnI	CCSGG	2 cut(s)	204, 1137
BcoDI	GTCTC	8 cut(s)	237, 884, 1017, 1106, 1247, 1272, 1293, 1345
BfaI	CTAG	2 cut(s)	747, 1067
BfmI	CTRYAG	1 cut(s)	1292
BfrI	CTTAAG	1 cut(s)	1211
BfuI	GTATCC	1 cut(s)	600
BisI	GCNGC	5 cut(s)	35, 194, 300, 484, 636
BlsI	GCNGC	5 cut(s)	36, 195, 301, 485, 637
Bme1390I	CCNGG	2 cut(s)	204, 1137
BmiI	GGNNCC	3 cut(s)	399, 509, 768
BmrFI	CCNGG	2 cut(s)	204, 1137
BmsI	GCATC	3 cut(s)	245, 586, 1389
BpmI	CTGGAG	2 cut(s)	261, 893
BpuMI	CCSGG	2 cut(s)	204, 1137
BsaI	GGTCTC	1 cut(s)	884
BsaJI	CCNNGG	3 cut(s)	203, 1135, 1410
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bsc4I	CCNNNNNNNGG	5 cut(s)	144, 393, 626, 1141, 1393
Bse1I	ACTGG	3 cut(s)	545, 910, 1398
Bse3DI	GCAATG	1 cut(s)	1331
BseDI	CCNNGG	3 cut(s)	203, 1135, 1410
BseGI	GGATG	6 cut(s)	10, 429, 667, 858, 1008, 1346
BseLI	CCNNNNNNNGG	5 cut(s)	144, 393, 626, 1141, 1393
BseMI	GCAATG	1 cut(s)	1331
BseMII	CTCAG	1 cut(s)	1058
BseNI	ACTGG	3 cut(s)	545, 910, 1398
BseRI	GAGGAG	2 cut(s)	671, 1098
BseSI	GKGCMC	1 cut(s)	357
BseXI	GCAGC	5 cut(s)	21, 205, 311, 495, 622
Bsh1236I	CGCG	1 cut(s)	278
BshFI	GGCC	1 cut(s)	265
BshNI	GGYRCC	1 cut(s)	507
BsiHKAI	GWGCWC	1 cut(s)	923
BsiSI	CCGG	2 cut(s)	203, 1137
BslFI	GGGAC	1 cut(s)	1312
BslI	CCNNNNNNNGG	5 cut(s)	144, 393, 626, 1141, 1393
BsmAI	GTCTC	8 cut(s)	237, 884, 1017, 1106, 1247, 1272, 1293, 1345
BsmFI	GGGAC	1 cut(s)	1312
BsmI	GAATGC	1 cut(s)	425
BsnI	GGCC	1 cut(s)	265
Bso31I	GGTCTC	1 cut(s)	884
Bsp1286I	GDGCHC	3 cut(s)	357, 769, 923
Bsp143I	GATC	4 cut(s)	226, 376, 397, 592
Bsp68I	TCGCGA	1 cut(s)	278
BspACI	CCGC	2 cut(s)	63, 874
BspANI	GGCC	1 cut(s)	265
BspCNI	CTCAG	1 cut(s)	1057
BspFNI	CGCG	1 cut(s)	278
BspLI	GGNNCC	3 cut(s)	399, 509, 768
BspPI	GGATC	4 cut(s)	221, 371, 392, 405
BspQI	GCTCTTC	2 cut(s)	872, 1311
BspT107I	GGYRCC	1 cut(s)	507
BspTI	CTTAAG	1 cut(s)	1211
BspTNI	GGTCTC	1 cut(s)	884
BsrDI	GCAATG	1 cut(s)	1331
BsrI	ACTGG	3 cut(s)	545, 910, 1398
BssECI	CCNNGG	3 cut(s)	203, 1135, 1410
BssMI	GATC	4 cut(s)	226, 376, 397, 592
BssT1I	CCWWGG	1 cut(s)	1410
Bst4CI	ACNGT	5 cut(s)	348, 962, 1058, 1230, 1296
Bst6I	CTCTTC	3 cut(s)	872, 1311, 1388
BstAFI	CTTAAG	1 cut(s)	1211
BstC8I	GCNNGC	1 cut(s)	311
BstDEI	CTNAG	3 cut(s)	804, 1044, 1098
BstF5I	GGATG	6 cut(s)	10, 429, 667, 858, 1008, 1346
BstFNI	CGCG	1 cut(s)	278
BstHHI	GCGC	2 cut(s)	304, 1404
BstKTI	GATC	4 cut(s)	229, 379, 400, 595
BstMAI	GTCTC	8 cut(s)	237, 884, 1017, 1106, 1247, 1272, 1293, 1345
BstMBI	GATC	4 cut(s)	226, 376, 397, 592
BstMWI	GCNNNNNNNGC	3 cut(s)	199, 310, 367
BstSCI	CCNGG	2 cut(s)	202, 1135
BstSFI	CTRYAG	1 cut(s)	1292
BstSLI	GKGCMC	1 cut(s)	357
BstUI	CGCG	1 cut(s)	278
BstV1I	GCAGC	5 cut(s)	21, 205, 311, 495, 622
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
BsuI	GTATCC	1 cut(s)	600
BsuRI	GGCC	1 cut(s)	265
BtsCI	GGATG	6 cut(s)	10, 429, 667, 858, 1008, 1346
BtsIMutI	CAGTG	1 cut(s)	1362
BtuMI	TCGCGA	1 cut(s)	278
Cac8I	GCNNGC	1 cut(s)	311
CaiI	CAGNNNCTG	1 cut(s)	1393
CfoI	GCGC	2 cut(s)	304, 1404
Csp6I	GTAC	5 cut(s)	413, 508, 542, 666, 1305
CviAII	CATG	6 cut(s)	174, 305, 358, 517, 573, 988
CviQI	GTAC	5 cut(s)	413, 508, 542, 666, 1305
DdeI	CTNAG	3 cut(s)	804, 1044, 1098
DpnI	GATC	4 cut(s)	228, 378, 399, 594
DpnII	GATC	4 cut(s)	226, 376, 397, 592
Eam1104I	CTCTTC	3 cut(s)	872, 1311, 1388
EarI	CTCTTC	3 cut(s)	872, 1311, 1388
EciI	GGCGGA	1 cut(s)	889
Ecl136II	GAGCTC	1 cut(s)	921
Eco130I	CCWWGG	1 cut(s)	1410
Eco24I	GRGCYC	2 cut(s)	769, 923
Eco31I	GGTCTC	1 cut(s)	884
Eco53kI	GAGCTC	1 cut(s)	921
EcoICRI	GAGCTC	1 cut(s)	921
EcoT14I	CCWWGG	1 cut(s)	1410
EcoT38I	GRGCYC	2 cut(s)	769, 923
ErhI	CCWWGG	1 cut(s)	1410
FaeI	CATG	6 cut(s)	177, 308, 361, 520, 576, 991
FaqI	GGGAC	1 cut(s)	1312
FatI	CATG	6 cut(s)	173, 304, 357, 516, 572, 987
FauI	CCCGC	1 cut(s)	56
Fnu4HI	GCNGC	5 cut(s)	35, 194, 300, 484, 636
FokI	GGATG	6 cut(s)	17, 416, 674, 845, 995, 1333
FriOI	GRGCYC	2 cut(s)	769, 923
Fsp4HI	GCNGC	5 cut(s)	35, 194, 300, 484, 636
FspBI	CTAG	2 cut(s)	747, 1067
GlaI	GCGC	2 cut(s)	303, 1403
GluI	GCNGC	5 cut(s)	35, 194, 300, 484, 636
GsuI	CTGGAG	2 cut(s)	261, 893
HaeIII	GGCC	1 cut(s)	265
HapII	CCGG	2 cut(s)	203, 1137
HhaI	GCGC	2 cut(s)	304, 1404
Hin1II	CATG	6 cut(s)	177, 308, 361, 520, 576, 991
Hin6I	GCGC	2 cut(s)	302, 1402
HinP1I	GCGC	2 cut(s)	302, 1402
HincII	GTYRAC	3 cut(s)	993, 1054, 1147
HindII	GTYRAC	3 cut(s)	993, 1054, 1147
HinfI	GANTC	4 cut(s)	563, 1148, 1255, 1373
HpaI	GTTAAC	1 cut(s)	993
HpaII	CCGG	2 cut(s)	203, 1137
HphI	GGTGA	4 cut(s)	190, 788, 835, 1408
Hpy166II	GTNNAC	4 cut(s)	181, 993, 1054, 1147
Hpy188I	TCNGA	5 cut(s)	46, 568, 655, 1082, 1234
Hpy188III	TCNNGA	8 cut(s)	240, 277, 799, 943, 965, 1046, 1067, 1387
Hpy8I	GTNNAC	4 cut(s)	181, 993, 1054, 1147
HpyAV	CCTTC	4 cut(s)	522, 625, 698, 863
HpyCH4III	ACNGT	5 cut(s)	348, 962, 1058, 1230, 1296
HpyCH4IV	ACGT	2 cut(s)	613, 848
HpyCH4V	TGCA	5 cut(s)	37, 143, 299, 425, 560
HpyF10VI	GCNNNNNNNGC	3 cut(s)	199, 310, 367
HpyF3I	CTNAG	3 cut(s)	804, 1044, 1098
HpySE526I	ACGT	2 cut(s)	613, 848
Hsp92II	CATG	6 cut(s)	177, 308, 361, 520, 576, 991
HspAI	GCGC	2 cut(s)	302, 1402
KpnI	GGTACC	1 cut(s)	511
KspAI	GTTAAC	1 cut(s)	993
Kzo9I	GATC	4 cut(s)	226, 376, 397, 592
LguI	GCTCTTC	2 cut(s)	872, 1311
LmnI	GCTCC	1 cut(s)	772
Lsp1109I	GCAGC	5 cut(s)	21, 205, 311, 495, 622
LweI	GCATC	3 cut(s)	245, 586, 1389
MaeI	CTAG	2 cut(s)	747, 1067
MaeII	ACGT	2 cut(s)	613, 848
MaeIII	GTNAC	2 cut(s)	776, 1058
MalI	GATC	4 cut(s)	228, 378, 399, 594
MboI	GATC	4 cut(s)	226, 376, 397, 592
MboII	GAAGA	7 cut(s)	134, 432, 724, 889, 1328, 1368, 1375
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	3 cut(s)	357, 769, 923
MluCI	AATT	4 cut(s)	254, 586, 938, 1300
MlyI	GAGTC	2 cut(s)	1142, 1249
MmeI	TCCRAC	1 cut(s)	681
MnlI	CCTC	8 cut(s)	426, 459, 649, 652, 843, 1042, 1076, 1306
MseI	TTAA	9 cut(s)	15, 252, 404, 642, 992, 1188, 1212, 1224, 1298
MspA1I	CMGCKG	1 cut(s)	486
MspCI	CTTAAG	1 cut(s)	1211
MspI	CCGG	2 cut(s)	203, 1137
MspR9I	CCNGG	2 cut(s)	204, 1137
Mva1269I	GAATGC	1 cut(s)	425
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	3 cut(s)	199, 310, 367
NciI	CCSGG	2 cut(s)	204, 1137
NdeII	GATC	4 cut(s)	226, 376, 397, 592
NlaIII	CATG	6 cut(s)	177, 308, 361, 520, 576, 991
NlaIV	GGNNCC	3 cut(s)	399, 509, 768
NmuCI	GTSAC	2 cut(s)	776, 1058
NruI	TCGCGA	1 cut(s)	278
PciSI	GCTCTTC	2 cut(s)	872, 1311
PcsI	WCGNNNNNNNCGW	1 cut(s)	610
PctI	GAATGC	1 cut(s)	425
PfeI	GAWTC	2 cut(s)	563, 1373
PflMI	CCANNNNNTGG	2 cut(s)	393, 1393
PkrI	GCNGC	5 cut(s)	36, 195, 301, 485, 637
PleI	GAGTC	2 cut(s)	1142, 1249
PpsI	GAGTC	2 cut(s)	1142, 1249
Psp124BI	GAGCTC	1 cut(s)	923
Psp1406I	AACGTT	1 cut(s)	613
PspN4I	GGNNCC	3 cut(s)	399, 509, 768
PstNI	CAGNNNCTG	1 cut(s)	1393
PsuI	RGATCY	1 cut(s)	397
PvuII	CAGCTG	1 cut(s)	486
RruI	TCGCGA	1 cut(s)	278
RsaI	GTAC	5 cut(s)	414, 509, 543, 667, 1306
RsaNI	GTAC	5 cut(s)	413, 508, 542, 666, 1305
SacI	GAGCTC	1 cut(s)	923
SapI	GCTCTTC	2 cut(s)	872, 1311
SaqAI	TTAA	9 cut(s)	15, 252, 404, 642, 992, 1188, 1212, 1224, 1298
SatI	GCNGC	5 cut(s)	35, 194, 300, 484, 636
Sau3AI	GATC	4 cut(s)	226, 376, 397, 592
SchI	GAGTC	2 cut(s)	1142, 1249
ScrFI	CCNGG	2 cut(s)	204, 1137
SduI	GDGCHC	3 cut(s)	357, 769, 923
SfaNI	GCATC	3 cut(s)	245, 586, 1389
SfcI	CTRYAG	1 cut(s)	1292
SmlI	CTYRAG	1 cut(s)	1211
SmoI	CTYRAG	1 cut(s)	1211
Sse9I	AATT	4 cut(s)	254, 586, 938, 1300
SsiI	CCGC	2 cut(s)	63, 874
SspI	AATATT	1 cut(s)	292
SspMI	CTAG	2 cut(s)	747, 1067
SstI	GAGCTC	1 cut(s)	923
StyD4I	CCNGG	2 cut(s)	202, 1135
StyI	CCWWGG	1 cut(s)	1410
TaaI	ACNGT	5 cut(s)	348, 962, 1058, 1230, 1296
TaiI	ACGT	2 cut(s)	616, 851
TaqI	TCGA	1 cut(s)	591
TasI	AATT	4 cut(s)	254, 586, 938, 1300
TfiI	GAWTC	2 cut(s)	563, 1373
Tru1I	TTAA	9 cut(s)	15, 252, 404, 642, 992, 1188, 1212, 1224, 1298
Tru9I	TTAA	9 cut(s)	15, 252, 404, 642, 992, 1188, 1212, 1224, 1298
TscAI	CASTG	1 cut(s)	1362
TseFI	GTSAC	2 cut(s)	776, 1058
TseI	GCWGC	5 cut(s)	34, 193, 299, 483, 635
Tsp45I	GTSAC	2 cut(s)	776, 1058
TspDTI	ATGAA	5 cut(s)	174, 418, 489, 533, 987
TspGWI	ACGGA	1 cut(s)	619
TspRI	CASTG	1 cut(s)	1362
Van91I	CCANNNNNTGG	2 cut(s)	393, 1393
Vha464I	CTTAAG	1 cut(s)	1211
XapI	RAATTY	1 cut(s)	254
XbaI	TCTAGA	1 cut(s)	1066
XspI	CTAG	2 cut(s)	747, 1067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.