Rw2G014440

RNA recognition motif

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
16265874 .. 16268880
3007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G014440.1

Sequence Viewer

Length: 1005 bp
ATGGACGAGATGGCCGCCTATTACCCTCCACCGCCTCCGCCACCAGGCTCCGTCCACTATCCATACTACCACCACCAGCCACCTCAACCGCCTGCCCCCGTGGCCCCTCCGCCGCCGCCGCAGCACCACCACCACCACTTGGTTCATCAGCCCTACTACCCTCCCCAGCCTCAGCCTTACGCTCCCTACGCGCCGCCACTCGTCGCCCAGGCCGCCTACGACGAGGTCCGGACCCTCTTCGTGGCCGGCCTACCCGAAGATGTCAAGCCCCGTGAAATCTACAACCTCTTCCGCGAGTTTCCCGGTTACGAGTCCTCTCACCTCCGAACCCCCACCGAGAAAACTCAGCCTTTTGCGTTTGCGGTGTTCTTGGACCAGCAATCTGCGATCGGAGCAATGCAAGCACTGAATGGGATGGTATTTGATCTTGAGAAGGGGTCGACATTATATATAGATCTAGCAAAATCTAATTCTAGGTCCAAGCGCTCAAGAACAGACGATGAAAGATCTGGCTCAGATAAGAAAGCTAGAGGTTCATCATATTCAAGGGCCACTTCTGATCCTGCAGGTGTTGGCAGCATTCACATGCCTGGAATGGGTAATTCTGCTTACAACATGATTGGTTATCCATCTGCACCAAGTCATGGCAGCTTCAGTGGCAGTGGTGTAAATGAGCCAATAGCCTCGAACATGAATAGTTCTTCAGCACCACATTTTCCACAAAACAATACTCCATGCCCAACACTTTTTGTGGCTAATTTGGGGCCAACTTGTACGGAGCAAGAGCTAGTTCAAGTATTTTCGAGGTGCCCTGGGTTTATAAAATTGAAGATGCAGAGCACATATGGGGCTCCAGTTGCATTTGTTGATTTTCAGGATACTGCTAGCTCAACTGGCGCACTGGGTCATCTGCAGGGCACAATTCTCTACTCGTCAACATCTGGAGAGGGCATGAGATTAGAGTTTGCCAAATCACGAATGGGAATGCGGAAGAAGCCGAAGTAA

Protein Analysis

334

Amino Acids

36.42

Weight (kDa)

7.79

Isoelectric Point (pI)

59.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 79 - 142 1.3e-11 RNA recognition motif
RRM_1 PF00076 249 - 312 2e-09 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 821
AarI CACCTGC 1 cut(s) 557
Acc36I ACCTGC 1 cut(s) 557
AccB1I GGYRCC 1 cut(s) 807
AccB7I CCANNNNNTGG 2 cut(s) 139, 644
AccI GTMKAC 1 cut(s) 440
AccII CGCG 2 cut(s) 191, 294
AccIII TCCGGA 1 cut(s) 228
AclWI GGATC 1 cut(s) 554
AcoI YGGCCR 2 cut(s) 12, 243
AcuI CTGAAG 2 cut(s) 637, 687
AfaI GTAC 1 cut(s) 775
AfeI AGCGCT 1 cut(s) 485
AfiI CCNNNNNNNGG 5 cut(s) 44, 139, 241, 596, 644
AgsI TTSAA 3 cut(s) 546, 794, 829
AjnI CCWGG 4 cut(s) 43, 207, 589, 811
AluBI AGCT 4 cut(s) 527, 651, 787, 888
AluI AGCT 4 cut(s) 527, 651, 787, 888
Alw21I GWGCWC 1 cut(s) 842
AlwI GGATC 1 cut(s) 554
Aor13HI TCCGGA 1 cut(s) 228
Aor51HI AGCGCT 1 cut(s) 485
AoxI GGCC 7 cut(s) 12, 102, 210, 243, 247, 549, 764
ApeKI GCWGC 3 cut(s) 121, 576, 648
AspLEI GCGC 3 cut(s) 193, 486, 899
AspS9I GGNCC 7 cut(s) 103, 226, 231, 373, 477, 549, 764
AsuC2I CCSGG 1 cut(s) 303
AsuHPI GGTGA 1 cut(s) 311
AsuNHI GCTAGC 1 cut(s) 884
AvaII GGWCC 4 cut(s) 226, 231, 373, 477
BaeGI GKGCMC 2 cut(s) 812, 920
BanI GGYRCC 1 cut(s) 807
BanII GRGCYC 1 cut(s) 853
Bbv12I GWGCWC 1 cut(s) 842
BbvCI CCTCAGC 1 cut(s) 171
BbvI GCAGC 3 cut(s) 133, 588, 660
BccI CCATC 3 cut(s) 4, 409, 637
BciT130I CCWGG 4 cut(s) 45, 209, 591, 813
BciVI GTATCC 1 cut(s) 871
BcnI CCSGG 1 cut(s) 303
BfaI CTAG 5 cut(s) 458, 474, 528, 788, 885
BfmI CTRYAG 2 cut(s) 564, 911
BfoI RGCGCY 1 cut(s) 487
BfuAI ACCTGC 1 cut(s) 557
BfuI GTATCC 1 cut(s) 871
BglI GCCNNNNNGGC 1 cut(s) 101
BglII AGATCT 2 cut(s) 454, 506
BisI GCNGC 9 cut(s) 15, 113, 116, 119, 122, 194, 213, 577, 649
BlsI GCNGC 9 cut(s) 16, 114, 117, 120, 123, 195, 214, 578, 650
Bme1390I CCNGG 5 cut(s) 45, 209, 303, 591, 813
Bme18I GGWCC 4 cut(s) 226, 231, 373, 477
BmgT120I GGNCC 7 cut(s) 103, 226, 231, 373, 477, 549, 764
BmiI GGNNCC 6 cut(s) 49, 105, 233, 765, 809, 852
BmrFI CCNGG 5 cut(s) 45, 209, 303, 591, 813
BmrI ACTGGG 1 cut(s) 911
BmsI GCATC 1 cut(s) 822
BmtI GCTAGC 1 cut(s) 888
BmuI ACTGGG 1 cut(s) 911
BpmI CTGGAG 2 cut(s) 837, 963
Bpu10I CCTNAGC 1 cut(s) 171
BpuEI CTTGAG 2 cut(s) 449, 472
BpuMI CCSGG 1 cut(s) 303
BsaJI CCNNGG 4 cut(s) 99, 207, 811, 812
BsaWI WCCGGW 1 cut(s) 228
Bsc4I CCNNNNNNNGG 5 cut(s) 44, 139, 241, 596, 644
Bse118I RCCGGY 1 cut(s) 245
Bse1I ACTGG 3 cut(s) 854, 898, 906
Bse3DI GCAATG 1 cut(s) 402
BseAI TCCGGA 1 cut(s) 228
BseBI CCWGG 4 cut(s) 45, 209, 591, 813
BseDI CCNNGG 4 cut(s) 99, 207, 811, 812
BseGI GGATG 1 cut(s) 420
BseLI CCNNNNNNNGG 5 cut(s) 44, 139, 241, 596, 644
BseMI GCAATG 1 cut(s) 402
BseMII CTCAG 3 cut(s) 185, 359, 528
BseNI ACTGG 3 cut(s) 854, 898, 906
BseSI GKGCMC 2 cut(s) 812, 920
BseXI GCAGC 3 cut(s) 133, 588, 660
BseYI CCCAGC 1 cut(s) 165
BsgI GTGCAG 1 cut(s) 618
Bsh1236I CGCG 2 cut(s) 191, 294
Bsh1285I CGRYCG 1 cut(s) 390
BshFI GGCC 7 cut(s) 14, 104, 212, 245, 249, 551, 766
BshNI GGYRCC 1 cut(s) 807
BsiEI CGRYCG 1 cut(s) 390
BsiHKAI GWGCWC 1 cut(s) 842
BsiSI CCGG 3 cut(s) 229, 246, 303
BslI CCNNNNNNNGG 5 cut(s) 44, 139, 241, 596, 644
BsmI GAATGC 2 cut(s) 579, 990
BsnI GGCC 7 cut(s) 14, 104, 212, 245, 249, 551, 766
Bsp1286I GDGCHC 4 cut(s) 812, 842, 853, 920
Bsp13I TCCGGA 1 cut(s) 228
Bsp143I GATC 5 cut(s) 387, 424, 454, 506, 559
BspANI GGCC 7 cut(s) 14, 104, 212, 245, 249, 551, 766
BspCNI CTCAG 3 cut(s) 184, 358, 527
BspEI TCCGGA 1 cut(s) 228
BspFNI CGCG 2 cut(s) 191, 294
BspLI GGNNCC 6 cut(s) 49, 105, 233, 765, 809, 852
BspMAI CTGCAG 2 cut(s) 568, 915
BspMI ACCTGC 1 cut(s) 557
BspOI GCTAGC 1 cut(s) 888
BspPI GGATC 1 cut(s) 554
BspT107I GGYRCC 1 cut(s) 807
BsrDI GCAATG 1 cut(s) 402
BsrFI RCCGGY 1 cut(s) 245
BsrI ACTGG 3 cut(s) 854, 898, 906
BssAI RCCGGY 1 cut(s) 245
BssECI CCNNGG 4 cut(s) 99, 207, 811, 812
BssMI GATC 5 cut(s) 387, 424, 454, 506, 559
Bst2UI CCWGG 4 cut(s) 45, 209, 591, 813
Bst6I CTCTTC 2 cut(s) 242, 293
BstC8I GCNNGC 4 cut(s) 93, 247, 402, 886
BstDEI CTNAG 3 cut(s) 171, 345, 514
BstDSI CCRYGG 1 cut(s) 99
BstF5I GGATG 1 cut(s) 420
BstFNI CGCG 2 cut(s) 191, 294
BstH2I RGCGCY 1 cut(s) 487
BstHHI GCGC 3 cut(s) 193, 486, 899
BstKTI GATC 5 cut(s) 390, 427, 457, 509, 562
BstMBI GATC 5 cut(s) 387, 424, 454, 506, 559
BstMCI CGRYCG 1 cut(s) 390
BstNI CCWGG 4 cut(s) 45, 209, 591, 813
BstNSI RCATGY 1 cut(s) 589
BstSCI CCNGG 5 cut(s) 43, 207, 301, 589, 811
BstSFI CTRYAG 2 cut(s) 564, 911
BstSLI GKGCMC 2 cut(s) 812, 920
BstUI CGCG 2 cut(s) 191, 294
BstV1I GCAGC 3 cut(s) 133, 588, 660
BstX2I RGATCY 2 cut(s) 454, 506
BstYI RGATCY 2 cut(s) 454, 506
BsuI GTATCC 1 cut(s) 871
BsuRI GGCC 7 cut(s) 14, 104, 212, 245, 249, 551, 766
BtgI CCRYGG 1 cut(s) 99
BtsCI GGATG 1 cut(s) 420
BtsI GCAGTG 1 cut(s) 667
BtsIMutI CAGTG 4 cut(s) 404, 661, 667, 899
BveI ACCTGC 1 cut(s) 557
Cac8I GCNNGC 4 cut(s) 93, 247, 402, 886
CfoI GCGC 3 cut(s) 193, 486, 899
Cfr10I RCCGGY 1 cut(s) 245
Cfr13I GGNCC 7 cut(s) 103, 226, 231, 373, 477, 549, 764
Csp6I GTAC 1 cut(s) 774
CviAII CATG 6 cut(s) 586, 616, 644, 691, 735, 952
CviQI GTAC 1 cut(s) 774
DdeI CTNAG 3 cut(s) 171, 345, 514
DpnI GATC 5 cut(s) 389, 426, 456, 508, 561
DpnII GATC 5 cut(s) 387, 424, 454, 506, 559
EaeI YGGCCR 2 cut(s) 12, 243
Eam1104I CTCTTC 2 cut(s) 242, 293
EarI CTCTTC 2 cut(s) 242, 293
EciI GGCGGA 2 cut(s) 27, 99
Eco24I GRGCYC 1 cut(s) 853
Eco47I GGWCC 4 cut(s) 226, 231, 373, 477
Eco47III AGCGCT 1 cut(s) 485
Eco57I CTGAAG 2 cut(s) 637, 687
EcoRII CCWGG 4 cut(s) 43, 207, 589, 811
EcoT38I GRGCYC 1 cut(s) 853
FaeI CATG 6 cut(s) 589, 619, 647, 694, 738, 955
FalI AAGNNNNNCTT 2 cut(s) 538, 570
FatI CATG 6 cut(s) 585, 615, 643, 690, 734, 951
FauNDI CATATG 1 cut(s) 844
FblI GTMKAC 1 cut(s) 440
Fnu4HI GCNGC 9 cut(s) 15, 113, 116, 119, 122, 194, 213, 577, 649
FokI GGATG 1 cut(s) 427
FriOI GRGCYC 1 cut(s) 853
FseI GGCCGGCC 1 cut(s) 249
Fsp4HI GCNGC 9 cut(s) 15, 113, 116, 119, 122, 194, 213, 577, 649
FspBI CTAG 5 cut(s) 458, 474, 528, 788, 885
GlaI GCGC 3 cut(s) 192, 485, 898
GluI GCNGC 9 cut(s) 15, 113, 116, 119, 122, 194, 213, 577, 649
GsaI CCCAGC 1 cut(s) 169
GsuI CTGGAG 2 cut(s) 837, 963
HaeII RGCGCY 1 cut(s) 487
HaeIII GGCC 7 cut(s) 14, 104, 212, 245, 249, 551, 766
HapII CCGG 3 cut(s) 229, 246, 303
HhaI GCGC 3 cut(s) 193, 486, 899
Hin1II CATG 6 cut(s) 589, 619, 647, 694, 738, 955
Hin6I GCGC 3 cut(s) 191, 484, 897
HinP1I GCGC 3 cut(s) 191, 484, 897
HincII GTYRAC 2 cut(s) 441, 936
HindII GTYRAC 2 cut(s) 441, 936
HinfI GANTC 1 cut(s) 311
HpaII CCGG 3 cut(s) 229, 246, 303
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 3 cut(s) 55, 441, 936
Hpy188I TCNGA 4 cut(s) 326, 392, 517, 559
Hpy188III TCNNGA 6 cut(s) 229, 428, 489, 875, 942, 975
Hpy8I GTNNAC 3 cut(s) 55, 441, 936
Hpy99I CGWCG 2 cut(s) 206, 224
HpyAV CCTTC 1 cut(s) 427
HpyCH4V TGCA 6 cut(s) 400, 566, 635, 835, 860, 913
HpyF3I CTNAG 3 cut(s) 171, 345, 514
Hsp92II CATG 6 cut(s) 589, 619, 647, 694, 738, 955
HspAI GCGC 3 cut(s) 191, 484, 897
Kpn2I TCCGGA 1 cut(s) 228
KroI GCCGGC 1 cut(s) 245
KroNI GCCGGC 1 cut(s) 247
Kzo9I GATC 5 cut(s) 387, 424, 454, 506, 559
LmnI GCTCC 5 cut(s) 53, 187, 392, 778, 856
Lsp1109I GCAGC 3 cut(s) 133, 588, 660
LweI GCATC 1 cut(s) 822
MaeI CTAG 5 cut(s) 458, 474, 528, 788, 885
MaeIII GTNAC 1 cut(s) 305
MalI GATC 5 cut(s) 389, 426, 456, 508, 561
MboI GATC 5 cut(s) 387, 424, 454, 506, 559
MboII GAAGA 6 cut(s) 229, 269, 280, 693, 841, 1003
MflI RGATCY 2 cut(s) 454, 506
MhlI GDGCHC 4 cut(s) 812, 842, 853, 920
MluCI AATT 5 cut(s) 469, 601, 757, 824, 921
MlyI GAGTC 1 cut(s) 320
MroI TCCGGA 1 cut(s) 228
MroNI GCCGGC 1 cut(s) 245
MslI CAYNNNNRTG 1 cut(s) 584
MspI CCGG 3 cut(s) 229, 246, 303
MspR9I CCNGG 5 cut(s) 45, 209, 303, 591, 813
Mva1269I GAATGC 2 cut(s) 579, 990
MvaI CCWGG 4 cut(s) 45, 209, 591, 813
MvnI CGCG 2 cut(s) 191, 294
NaeI GCCGGC 1 cut(s) 247
NciI CCSGG 1 cut(s) 303
NdeI CATATG 1 cut(s) 844
NdeII GATC 5 cut(s) 387, 424, 454, 506, 559
NgoMIV GCCGGC 1 cut(s) 245
NheI GCTAGC 1 cut(s) 884
NlaIII CATG 6 cut(s) 589, 619, 647, 694, 738, 955
NlaIV GGNNCC 6 cut(s) 49, 105, 233, 765, 809, 852
NspI RCATGY 1 cut(s) 589
PaqCI CACCTGC 1 cut(s) 557
PasI CCCWGGG 1 cut(s) 812
PctI GAATGC 2 cut(s) 579, 990
PdiI GCCGGC 1 cut(s) 247
PflFI GACNNNGTC 1 cut(s) 224
PflMI CCANNNNNTGG 2 cut(s) 139, 644
PkrI GCNGC 9 cut(s) 16, 114, 117, 120, 123, 195, 214, 578, 650
Ple19I CGATCG 1 cut(s) 390
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
PsiI TTATAA 1 cut(s) 821
Psp6I CCWGG 4 cut(s) 43, 207, 589, 811
PspFI CCCAGC 1 cut(s) 165
PspGI CCWGG 4 cut(s) 43, 207, 589, 811
PspN4I GGNNCC 6 cut(s) 49, 105, 233, 765, 809, 852
PspPI GGNCC 7 cut(s) 103, 226, 231, 373, 477, 549, 764
PstI CTGCAG 2 cut(s) 568, 915
PsuI RGATCY 2 cut(s) 454, 506
PsyI GACNNNGTC 1 cut(s) 224
PvuI CGATCG 1 cut(s) 390
RigI GGCCGGCC 1 cut(s) 249
RsaI GTAC 1 cut(s) 775
RsaNI GTAC 1 cut(s) 774
RseI CAYNNNNRTG 1 cut(s) 584
SalI GTCGAC 1 cut(s) 439
SatI GCNGC 9 cut(s) 15, 113, 116, 119, 122, 194, 213, 577, 649
Sau3AI GATC 5 cut(s) 387, 424, 454, 506, 559
Sau96I GGNCC 7 cut(s) 103, 226, 231, 373, 477, 549, 764
SbfI CCTGCAGG 1 cut(s) 568
SchI GAGTC 1 cut(s) 320
ScrFI CCNGG 5 cut(s) 45, 209, 303, 591, 813
SdaI CCTGCAGG 1 cut(s) 568
SduI GDGCHC 4 cut(s) 812, 842, 853, 920
SfaNI GCATC 1 cut(s) 822
SfcI CTRYAG 2 cut(s) 564, 911
SinI GGWCC 4 cut(s) 226, 231, 373, 477
SmiMI CAYNNNNRTG 1 cut(s) 584
SmlI CTYRAG 2 cut(s) 428, 487
SmoI CTYRAG 2 cut(s) 428, 487
Sse8387I CCTGCAGG 1 cut(s) 568
Sse9I AATT 5 cut(s) 469, 601, 757, 824, 921
SspMI CTAG 5 cut(s) 458, 474, 528, 788, 885
StyD4I CCNGG 5 cut(s) 43, 207, 301, 589, 811
TaqI TCGA 3 cut(s) 440, 686, 803
TasI AATT 5 cut(s) 469, 601, 757, 824, 921
TauI GCSGC 6 cut(s) 17, 115, 118, 121, 196, 215
TscAI CASTG 4 cut(s) 411, 661, 667, 906
TseI GCWGC 3 cut(s) 121, 576, 648
TspDTI ATGAA 4 cut(s) 134, 516, 525, 707
TspGWI ACGGA 2 cut(s) 40, 791
TspRI CASTG 4 cut(s) 411, 661, 667, 906
Tth111I GACNNNGTC 1 cut(s) 224
Van91I CCANNNNNTGG 2 cut(s) 139, 644
VpaK11BI GGWCC 4 cut(s) 226, 231, 373, 477
XceI RCATGY 1 cut(s) 589
XcmI CCANNNNNNNNNTGG 1 cut(s) 976
XmiI GTMKAC 1 cut(s) 440
XspI CTAG 5 cut(s) 458, 474, 528, 788, 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.