RNA recognition motif
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G42240 AT2G42240 AT2G42240 |
| fragaria_vesca | FvH4_1g16380 FvH4_1g16380 |
| malus_domestica | MD02G1176300.v1.1 MD15G1286700.v1.1 |
| prunus_persica | Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 |
| pyrus_communis | pycom02g14250 pycom15g25000 |
| rosa_chinensis | RchiOBHm_Chr2g0106251 |
| rosa_laevigata | RLG00000017483 |
| rosa_multiflora | Rmu_sc0008603.1_g000013 |
| rosa_roxburghii | Rroxscaffold_2G00137330 |
| rosa_rugosa | Rorug02G0133700 Rorug02G0133800 |
| rosa_samantha | Rh2AG184900 Rh2BG195200 Rh2CG190000 Rh2DG191100 |
| rosa_wichuraiana | Rw2G014440 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 106, 789 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 626 |
| AccBSI | CCGCTC | 1 cut(s) | 182 |
| AccII | CGCG | 3 cut(s) | 176, 230, 279 |
| AccIII | TCCGGA | 2 cut(s) | 213, 309 |
| AclWI | GGATC | 1 cut(s) | 366 |
| AcyI | GRCGYC | 1 cut(s) | 107 |
| AfaI | GTAC | 2 cut(s) | 651, 757 |
| AfeI | AGCGCT | 1 cut(s) | 882 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 44, 309, 548, 578, 626 |
| AgsI | TTSAA | 5 cut(s) | 531, 637, 776, 786, 811 |
| AjnI | CCWGG | 4 cut(s) | 43, 126, 571, 793 |
| AluBI | AGCT | 3 cut(s) | 512, 769, 833 |
| AluI | AGCT | 3 cut(s) | 512, 769, 833 |
| Alw21I | GWGCWC | 2 cut(s) | 824, 835 |
| Alw26I | GTCTC | 2 cut(s) | 333, 650 |
| AlwI | GGATC | 1 cut(s) | 366 |
| Ama87I | CYCGRG | 1 cut(s) | 255 |
| Aor13HI | TCCGGA | 2 cut(s) | 213, 309 |
| Aor51HI | AGCGCT | 1 cut(s) | 882 |
| AoxI | GGCC | 1 cut(s) | 746 |
| ApeKI | GCWGC | 3 cut(s) | 14, 558, 686 |
| AspLEI | GCGC | 4 cut(s) | 109, 178, 539, 883 |
| AspS9I | GGNCC | 4 cut(s) | 211, 216, 312, 746 |
| AsuC2I | CCSGG | 1 cut(s) | 288 |
| AvaI | CYCGRG | 1 cut(s) | 255 |
| AvaII | GGWCC | 3 cut(s) | 211, 216, 312 |
| BaeGI | GKGCMC | 1 cut(s) | 794 |
| BanI | GGYRCC | 2 cut(s) | 106, 789 |
| BanII | GRGCYC | 1 cut(s) | 835 |
| BbsI | GAAGAC | 1 cut(s) | 227 |
| Bbv12I | GWGCWC | 2 cut(s) | 824, 835 |
| BbvI | GCAGC | 2 cut(s) | 570, 698 |
| BccI | CCATC | 2 cut(s) | 394, 619 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 30 |
| BciT130I | CCWGG | 4 cut(s) | 45, 128, 573, 795 |
| BciVI | GTATCC | 1 cut(s) | 853 |
| BcnI | CCSGG | 1 cut(s) | 288 |
| BcoDI | GTCTC | 2 cut(s) | 333, 650 |
| BfaI | CTAG | 3 cut(s) | 443, 459, 513 |
| BfmI | CTRYAG | 1 cut(s) | 684 |
| BfoI | RGCGCY | 3 cut(s) | 110, 540, 884 |
| BfuI | GTATCC | 1 cut(s) | 853 |
| BglII | AGATCT | 1 cut(s) | 491 |
| BisI | GCNGC | 3 cut(s) | 15, 559, 687 |
| BlsI | GCNGC | 3 cut(s) | 16, 560, 688 |
| Bme1390I | CCNGG | 5 cut(s) | 45, 128, 288, 573, 795 |
| Bme18I | GGWCC | 3 cut(s) | 211, 216, 312 |
| BmeT110I | CYCGRG | 1 cut(s) | 255 |
| BmgT120I | GGNCC | 4 cut(s) | 211, 216, 312, 746 |
| BmiI | GGNNCC | 6 cut(s) | 49, 108, 218, 314, 747, 791 |
| BmrFI | CCNGG | 5 cut(s) | 45, 128, 288, 573, 795 |
| BmsI | GCATC | 1 cut(s) | 804 |
| BpiI | GAAGAC | 1 cut(s) | 227 |
| BpmI | CTGGAG | 2 cut(s) | 819, 897 |
| BpuEI | CTTGAG | 2 cut(s) | 434, 457 |
| BpuMI | CCSGG | 1 cut(s) | 288 |
| BsaHI | GRCGYC | 1 cut(s) | 107 |
| BsaJI | CCNNGG | 2 cut(s) | 793, 794 |
| BsaWI | WCCGGW | 2 cut(s) | 213, 309 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 284, 314, 822, 852 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 44, 309, 548, 578, 626 |
| Bse1I | ACTGG | 2 cut(s) | 836, 880 |
| Bse3DI | GCAATG | 1 cut(s) | 387 |
| BseAI | TCCGGA | 2 cut(s) | 213, 309 |
| BseBI | CCWGG | 4 cut(s) | 45, 128, 573, 795 |
| BseDI | CCNNGG | 2 cut(s) | 793, 794 |
| BseGI | GGATG | 1 cut(s) | 405 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 44, 309, 548, 578, 626 |
| BseMI | GCAATG | 1 cut(s) | 387 |
| BseMII | CTCAG | 3 cut(s) | 344, 513, 875 |
| BseNI | ACTGG | 2 cut(s) | 836, 880 |
| BseSI | GKGCMC | 1 cut(s) | 794 |
| BseXI | GCAGC | 2 cut(s) | 570, 698 |
| BsgI | GTGCAG | 1 cut(s) | 600 |
| Bsh1236I | CGCG | 3 cut(s) | 176, 230, 279 |
| Bsh1285I | CGRYCG | 1 cut(s) | 375 |
| BshFI | GGCC | 1 cut(s) | 748 |
| BshNI | GGYRCC | 2 cut(s) | 106, 789 |
| BsiEI | CGRYCG | 1 cut(s) | 375 |
| BsiHKAI | GWGCWC | 2 cut(s) | 824, 835 |
| BsiHKCI | CYCGRG | 1 cut(s) | 255 |
| BsiSI | CCGG | 4 cut(s) | 214, 287, 310, 666 |
| BslFI | GGGAC | 1 cut(s) | 173 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 44, 309, 548, 578, 626 |
| BsmAI | GTCTC | 2 cut(s) | 333, 650 |
| BsmFI | GGGAC | 1 cut(s) | 173 |
| BsmI | GAATGC | 2 cut(s) | 561, 972 |
| BsnI | GGCC | 1 cut(s) | 748 |
| BsoBI | CYCGRG | 1 cut(s) | 255 |
| Bsp1286I | GDGCHC | 3 cut(s) | 794, 824, 835 |
| Bsp13I | TCCGGA | 2 cut(s) | 213, 309 |
| Bsp1407I | TGTACA | 1 cut(s) | 649 |
| Bsp143I | GATC | 5 cut(s) | 358, 372, 409, 439, 491 |
| Bsp68I | TCGCGA | 1 cut(s) | 279 |
| BspANI | GGCC | 1 cut(s) | 748 |
| BspCNI | CTCAG | 3 cut(s) | 343, 512, 876 |
| BspEI | TCCGGA | 2 cut(s) | 213, 309 |
| BspFNI | CGCG | 3 cut(s) | 176, 230, 279 |
| BspLI | GGNNCC | 6 cut(s) | 49, 108, 218, 314, 747, 791 |
| BspMAI | CTGCAG | 1 cut(s) | 688 |
| BspPI | GGATC | 1 cut(s) | 366 |
| BspT107I | GGYRCC | 2 cut(s) | 106, 789 |
| BsrBI | CCGCTC | 1 cut(s) | 182 |
| BsrDI | GCAATG | 1 cut(s) | 387 |
| BsrGI | TGTACA | 1 cut(s) | 649 |
| BsrI | ACTGG | 2 cut(s) | 836, 880 |
| BssECI | CCNNGG | 2 cut(s) | 793, 794 |
| BssMI | GATC | 5 cut(s) | 358, 372, 409, 439, 491 |
| BssNI | GRCGYC | 1 cut(s) | 107 |
| Bst2UI | CCWGG | 4 cut(s) | 45, 128, 573, 795 |
| Bst4CI | ACNGT | 1 cut(s) | 114 |
| Bst6I | CTCTTC | 1 cut(s) | 172 |
| BstACI | GRCGYC | 1 cut(s) | 107 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 386 |
| BstAUI | TGTACA | 1 cut(s) | 649 |
| BstC8I | GCNNGC | 3 cut(s) | 180, 387, 868 |
| BstDEI | CTNAG | 3 cut(s) | 330, 499, 884 |
| BstF5I | GGATG | 1 cut(s) | 405 |
| BstFNI | CGCG | 3 cut(s) | 176, 230, 279 |
| BstH2I | RGCGCY | 3 cut(s) | 110, 540, 884 |
| BstHHI | GCGC | 4 cut(s) | 109, 178, 539, 883 |
| BstKTI | GATC | 5 cut(s) | 361, 375, 412, 442, 494 |
| BstMAI | GTCTC | 2 cut(s) | 333, 650 |
| BstMBI | GATC | 5 cut(s) | 358, 372, 409, 439, 491 |
| BstMCI | CGRYCG | 1 cut(s) | 375 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 85, 377, 386, 839, 976 |
| BstNI | CCWGG | 4 cut(s) | 45, 128, 573, 795 |
| BstNSI | RCATGY | 2 cut(s) | 389, 571 |
| BstSCI | CCNGG | 5 cut(s) | 43, 126, 286, 571, 793 |
| BstSFI | CTRYAG | 1 cut(s) | 684 |
| BstSLI | GKGCMC | 1 cut(s) | 794 |
| BstUI | CGCG | 3 cut(s) | 176, 230, 279 |
| BstV1I | GCAGC | 2 cut(s) | 570, 698 |
| BstV2I | GAAGAC | 1 cut(s) | 227 |
| BstX2I | RGATCY | 1 cut(s) | 491 |
| BstYI | RGATCY | 1 cut(s) | 491 |
| BsuI | GTATCC | 1 cut(s) | 853 |
| BsuRI | GGCC | 1 cut(s) | 748 |
| BtsCI | GGATG | 1 cut(s) | 405 |
| BtuMI | TCGCGA | 1 cut(s) | 279 |
| Cac8I | GCNNGC | 3 cut(s) | 180, 387, 868 |
| CfoI | GCGC | 4 cut(s) | 109, 178, 539, 883 |
| Cfr13I | GGNCC | 4 cut(s) | 211, 216, 312, 746 |
| CsiI | ACCWGGT | 1 cut(s) | 126 |
| Csp6I | GTAC | 2 cut(s) | 650, 756 |
| CviAII | CATG | 7 cut(s) | 10, 386, 568, 626, 653, 717, 934 |
| CviQI | GTAC | 2 cut(s) | 650, 756 |
| DdeI | CTNAG | 3 cut(s) | 330, 499, 884 |
| DinI | GGCGCC | 1 cut(s) | 108 |
| DpnI | GATC | 5 cut(s) | 360, 374, 411, 441, 493 |
| DpnII | GATC | 5 cut(s) | 358, 372, 409, 439, 491 |
| Eam1104I | CTCTTC | 1 cut(s) | 172 |
| EarI | CTCTTC | 1 cut(s) | 172 |
| Ecl136II | GAGCTC | 1 cut(s) | 833 |
| Eco24I | GRGCYC | 1 cut(s) | 835 |
| Eco47I | GGWCC | 3 cut(s) | 211, 216, 312 |
| Eco47III | AGCGCT | 1 cut(s) | 882 |
| Eco53kI | GAGCTC | 1 cut(s) | 833 |
| Eco88I | CYCGRG | 1 cut(s) | 255 |
| EcoICRI | GAGCTC | 1 cut(s) | 833 |
| EcoRII | CCWGG | 4 cut(s) | 43, 126, 571, 793 |
| EcoT22I | ATGCAT | 1 cut(s) | 387 |
| EcoT38I | GRGCYC | 1 cut(s) | 835 |
| EgeI | GGCGCC | 1 cut(s) | 108 |
| EheI | GGCGCC | 1 cut(s) | 108 |
| FaeI | CATG | 7 cut(s) | 13, 389, 571, 629, 656, 720, 937 |
| FaqI | GGGAC | 1 cut(s) | 173 |
| FatI | CATG | 7 cut(s) | 9, 385, 567, 625, 652, 716, 933 |
| FauI | CCCGC | 3 cut(s) | 33, 187, 223 |
| FauNDI | CATATG | 1 cut(s) | 826 |
| Fnu4HI | GCNGC | 3 cut(s) | 15, 559, 687 |
| FokI | GGATG | 1 cut(s) | 412 |
| FriOI | GRGCYC | 1 cut(s) | 835 |
| Fsp4HI | GCNGC | 3 cut(s) | 15, 559, 687 |
| FspBI | CTAG | 3 cut(s) | 443, 459, 513 |
| GlaI | GCGC | 4 cut(s) | 108, 177, 538, 882 |
| GluI | GCNGC | 3 cut(s) | 15, 559, 687 |
| GsuI | CTGGAG | 2 cut(s) | 819, 897 |
| HaeII | RGCGCY | 3 cut(s) | 110, 540, 884 |
| HaeIII | GGCC | 1 cut(s) | 748 |
| HapII | CCGG | 4 cut(s) | 214, 287, 310, 666 |
| HhaI | GCGC | 4 cut(s) | 109, 178, 539, 883 |
| Hin1I | GRCGYC | 1 cut(s) | 107 |
| Hin1II | CATG | 7 cut(s) | 13, 389, 571, 629, 656, 720, 937 |
| Hin6I | GCGC | 4 cut(s) | 107, 176, 537, 881 |
| HinP1I | GCGC | 4 cut(s) | 107, 176, 537, 881 |
| HincII | GTYRAC | 2 cut(s) | 426, 918 |
| HindII | GTYRAC | 2 cut(s) | 426, 918 |
| HinfI | GANTC | 4 cut(s) | 296, 545, 772, 886 |
| HpaII | CCGG | 4 cut(s) | 214, 287, 310, 666 |
| Hpy166II | GTNNAC | 3 cut(s) | 55, 426, 918 |
| Hpy188I | TCNGA | 2 cut(s) | 393, 502 |
| Hpy188III | TCNNGA | 9 cut(s) | 214, 239, 278, 310, 413, 474, 542, 857, 957 |
| Hpy8I | GTNNAC | 3 cut(s) | 55, 426, 918 |
| Hpy99I | CGWCG | 2 cut(s) | 103, 209 |
| HpyAV | CCTTC | 1 cut(s) | 923 |
| HpyCH4III | ACNGT | 1 cut(s) | 114 |
| HpyCH4IV | ACGT | 1 cut(s) | 672 |
| HpyCH4V | TGCA | 6 cut(s) | 385, 617, 686, 817, 842, 895 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 85, 377, 386, 839, 976 |
| HpyF3I | CTNAG | 3 cut(s) | 330, 499, 884 |
| HpySE526I | ACGT | 1 cut(s) | 672 |
| Hsp92I | GRCGYC | 1 cut(s) | 107 |
| Hsp92II | CATG | 7 cut(s) | 13, 389, 571, 629, 656, 720, 937 |
| HspAI | GCGC | 4 cut(s) | 107, 176, 537, 881 |
| KasI | GGCGCC | 1 cut(s) | 106 |
| Kpn2I | TCCGGA | 2 cut(s) | 213, 309 |
| Kzo9I | GATC | 5 cut(s) | 358, 372, 409, 439, 491 |
| LmnI | GCTCC | 6 cut(s) | 53, 544, 760, 830, 838, 878 |
| Lsp1109I | GCAGC | 2 cut(s) | 570, 698 |
| LweI | GCATC | 1 cut(s) | 804 |
| MabI | ACCWGGT | 1 cut(s) | 126 |
| MaeI | CTAG | 3 cut(s) | 443, 459, 513 |
| MaeII | ACGT | 1 cut(s) | 672 |
| MaeIII | GTNAC | 2 cut(s) | 114, 290 |
| MalI | GATC | 5 cut(s) | 360, 374, 411, 441, 493 |
| MbiI | CCGCTC | 1 cut(s) | 182 |
| MboI | GATC | 5 cut(s) | 358, 372, 409, 439, 491 |
| MboII | GAAGA | 5 cut(s) | 159, 227, 254, 823, 985 |
| MfeI | CAATTG | 1 cut(s) | 660 |
| MflI | RGATCY | 1 cut(s) | 491 |
| MhlI | GDGCHC | 3 cut(s) | 794, 824, 835 |
| MluCI | AATT | 6 cut(s) | 454, 583, 660, 679, 806, 903 |
| Mly113I | GGCGCC | 1 cut(s) | 107 |
| MlyI | GAGTC | 2 cut(s) | 305, 895 |
| MnlI | CCTC | 9 cut(s) | 45, 105, 156, 202, 208, 281, 310, 317, 509 |
| Mph1103I | ATGCAT | 1 cut(s) | 387 |
| MroI | TCCGGA | 2 cut(s) | 213, 309 |
| MslI | CAYNNNNRTG | 1 cut(s) | 566 |
| MspI | CCGG | 4 cut(s) | 214, 287, 310, 666 |
| MspR9I | CCNGG | 5 cut(s) | 45, 128, 288, 573, 795 |
| MunI | CAATTG | 1 cut(s) | 660 |
| Mva1269I | GAATGC | 2 cut(s) | 561, 972 |
| MvaI | CCWGG | 4 cut(s) | 45, 128, 573, 795 |
| MvnI | CGCG | 3 cut(s) | 176, 230, 279 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 85, 377, 386, 839, 976 |
| NarI | GGCGCC | 1 cut(s) | 107 |
| NciI | CCSGG | 1 cut(s) | 288 |
| NdeI | CATATG | 1 cut(s) | 826 |
| NdeII | GATC | 5 cut(s) | 358, 372, 409, 439, 491 |
| NlaIII | CATG | 7 cut(s) | 13, 389, 571, 629, 656, 720, 937 |
| NlaIV | GGNNCC | 6 cut(s) | 49, 108, 218, 314, 747, 791 |
| NruI | TCGCGA | 1 cut(s) | 279 |
| NsiI | ATGCAT | 1 cut(s) | 387 |
| NspI | RCATGY | 2 cut(s) | 389, 571 |
| PaeI | GCATGC | 1 cut(s) | 389 |
| PasI | CCCWGGG | 1 cut(s) | 794 |
| PctI | GAATGC | 2 cut(s) | 561, 972 |
| PfeI | GAWTC | 2 cut(s) | 545, 772 |
| PflFI | GACNNNGTC | 1 cut(s) | 209 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 626 |
| PkrI | GCNGC | 3 cut(s) | 16, 560, 688 |
| Ple19I | CGATCG | 1 cut(s) | 375 |
| PleI | GAGTC | 2 cut(s) | 304, 894 |
| PluTI | GGCGCC | 1 cut(s) | 110 |
| PpsI | GAGTC | 2 cut(s) | 304, 894 |
| Psp124BI | GAGCTC | 1 cut(s) | 835 |
| Psp6I | CCWGG | 4 cut(s) | 43, 126, 571, 793 |
| PspGI | CCWGG | 4 cut(s) | 43, 126, 571, 793 |
| PspN4I | GGNNCC | 6 cut(s) | 49, 108, 218, 314, 747, 791 |
| PspPI | GGNCC | 4 cut(s) | 211, 216, 312, 746 |
| PstI | CTGCAG | 1 cut(s) | 688 |
| PsuI | RGATCY | 1 cut(s) | 491 |
| PsyI | GACNNNGTC | 1 cut(s) | 209 |
| PvuI | CGATCG | 1 cut(s) | 375 |
| RruI | TCGCGA | 1 cut(s) | 279 |
| RsaI | GTAC | 2 cut(s) | 651, 757 |
| RsaNI | GTAC | 2 cut(s) | 650, 756 |
| RseI | CAYNNNNRTG | 1 cut(s) | 566 |
| SacI | GAGCTC | 1 cut(s) | 835 |
| SatI | GCNGC | 3 cut(s) | 15, 559, 687 |
| Sau3AI | GATC | 5 cut(s) | 358, 372, 409, 439, 491 |
| Sau96I | GGNCC | 4 cut(s) | 211, 216, 312, 746 |
| SchI | GAGTC | 2 cut(s) | 305, 895 |
| ScrFI | CCNGG | 5 cut(s) | 45, 128, 288, 573, 795 |
| SduI | GDGCHC | 3 cut(s) | 794, 824, 835 |
| SexAI | ACCWGGT | 1 cut(s) | 126 |
| SfaNI | GCATC | 1 cut(s) | 804 |
| SfcI | CTRYAG | 1 cut(s) | 684 |
| SfoI | GGCGCC | 1 cut(s) | 108 |
| SinI | GGWCC | 3 cut(s) | 211, 216, 312 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 566 |
| SmlI | CTYRAG | 2 cut(s) | 413, 472 |
| SmoI | CTYRAG | 2 cut(s) | 413, 472 |
| SphI | GCATGC | 1 cut(s) | 389 |
| Sse9I | AATT | 6 cut(s) | 454, 583, 660, 679, 806, 903 |
| SspDI | GGCGCC | 1 cut(s) | 106 |
| SspMI | CTAG | 3 cut(s) | 443, 459, 513 |
| SstI | GAGCTC | 1 cut(s) | 835 |
| StyD4I | CCNGG | 5 cut(s) | 43, 126, 286, 571, 793 |
| TaaI | ACNGT | 1 cut(s) | 114 |
| TaiI | ACGT | 1 cut(s) | 675 |
| TasI | AATT | 6 cut(s) | 454, 583, 660, 679, 806, 903 |
| TatI | WGTACW | 1 cut(s) | 649 |
| TfiI | GAWTC | 2 cut(s) | 545, 772 |
| TseI | GCWGC | 3 cut(s) | 14, 558, 686 |
| TspDTI | ATGAA | 3 cut(s) | 501, 510, 790 |
| TspGWI | ACGGA | 3 cut(s) | 40, 87, 773 |
| Tth111I | GACNNNGTC | 1 cut(s) | 209 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 626 |
| VpaK11BI | GGWCC | 3 cut(s) | 211, 216, 312 |
| XceI | RCATGY | 2 cut(s) | 389, 571 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 958 |
| XspI | CTAG | 3 cut(s) | 443, 459, 513 |
| Zsp2I | ATGCAT | 1 cut(s) | 387 |