Prupe.6G231400_v2.0.a1

RNA recognition motif

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
23403988 .. 23407290
3303 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G231400.3

Sequence Viewer

Length: 987 bp
ATGGACGACATGGCTGCCTATTACCCGCCACCGCCTCCACCACCAGGCTCCGTCCACTACCCATACTACCAACAACCGCCACCACCGCAACCGCCTCCGTCGGTGGCGCCACCGTTACAGCACCACCTGGTTCAGCCCTACTTCCCTCAACACCCACCGCCTTTCTCTTCCTACGCGCCCGCTCTCGTCCCCCAACCCTCACACGACGAGGTCCGGACCCTATTTGTCGCGGGTCTTCCCGAAGATGTCAAGCCCCGAGAAATCTACAACCTCTTTCGCGAGTTTCCGGGTTACGAGTCCTCCCACCTCCGGACCCCAACCGAGAAGTCTCAGCCTTTTGCTTTTGCGGTGTTCTTGGATCAGCAGTCTGCGATCGGGGCAATGCATGCTCTGAATGGGATGGTGTTTGATCTTGAGAAAGGGTCAACATTATATATTGATCTAGCAAAATCTAATTCTAGGTCAAAACGCTCAAGAACAGATGATGAAAGATCTGGCTCAGATAAGAAAGCTAGAGGTTCATCGTATTCAAGGGGCGCTCCTGATTCTGGTGTTGGCAGCATTCACATGCCTGGAATGGGTAATTCTGCTTACAACATCATTGGTTATCCATCTGCACCAAGTCATGGAAACTTCAATGGCATACCTGTACATGAGACAATTGCCGGAAACGTGAATAATTCTGCAGCACAACATTTTCCACAAAATAATACTCCATGCCCAACTATTTTCGTGGCTAACTTGGGGCCAACTTGTACGGAGCAAGAGCTGATTCAAGTATTTTCAAGGTGCCCTGGGTTCATAAAATTGAAGATGCAGAGCACATATGGAGCTCCAGTTGCATTTGTTGATTTTCAGGATACTGCCTGCTCAACTGGAGCGCTGAGTCATCTGCAAGGCACAATTCTCTACTCGTCAACAACGGGCGAAGGCATGAGATTGGAGTATGCCAAATCACGAATGGGAATGCGGAAGAAGCCAAAGTAA

Protein Analysis

329

Amino Acids

35.82

Weight (kDa)

7.74

Isoelectric Point (pI)

61.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 106, 789
AccB7I CCANNNNNTGG 1 cut(s) 626
AccBSI CCGCTC 1 cut(s) 182
AccII CGCG 3 cut(s) 176, 230, 279
AccIII TCCGGA 2 cut(s) 213, 309
AclWI GGATC 1 cut(s) 366
AcyI GRCGYC 1 cut(s) 107
AfaI GTAC 2 cut(s) 651, 757
AfeI AGCGCT 1 cut(s) 882
AfiI CCNNNNNNNGG 5 cut(s) 44, 309, 548, 578, 626
AgsI TTSAA 5 cut(s) 531, 637, 776, 786, 811
AjnI CCWGG 4 cut(s) 43, 126, 571, 793
AluBI AGCT 3 cut(s) 512, 769, 833
AluI AGCT 3 cut(s) 512, 769, 833
Alw21I GWGCWC 2 cut(s) 824, 835
Alw26I GTCTC 2 cut(s) 333, 650
AlwI GGATC 1 cut(s) 366
Ama87I CYCGRG 1 cut(s) 255
Aor13HI TCCGGA 2 cut(s) 213, 309
Aor51HI AGCGCT 1 cut(s) 882
AoxI GGCC 1 cut(s) 746
ApeKI GCWGC 3 cut(s) 14, 558, 686
AspLEI GCGC 4 cut(s) 109, 178, 539, 883
AspS9I GGNCC 4 cut(s) 211, 216, 312, 746
AsuC2I CCSGG 1 cut(s) 288
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 3 cut(s) 211, 216, 312
BaeGI GKGCMC 1 cut(s) 794
BanI GGYRCC 2 cut(s) 106, 789
BanII GRGCYC 1 cut(s) 835
BbsI GAAGAC 1 cut(s) 227
Bbv12I GWGCWC 2 cut(s) 824, 835
BbvI GCAGC 2 cut(s) 570, 698
BccI CCATC 2 cut(s) 394, 619
BcgI CGANNNNNNTGC 1 cut(s) 30
BciT130I CCWGG 4 cut(s) 45, 128, 573, 795
BciVI GTATCC 1 cut(s) 853
BcnI CCSGG 1 cut(s) 288
BcoDI GTCTC 2 cut(s) 333, 650
BfaI CTAG 3 cut(s) 443, 459, 513
BfmI CTRYAG 1 cut(s) 684
BfoI RGCGCY 3 cut(s) 110, 540, 884
BfuI GTATCC 1 cut(s) 853
BglII AGATCT 1 cut(s) 491
BisI GCNGC 3 cut(s) 15, 559, 687
BlsI GCNGC 3 cut(s) 16, 560, 688
Bme1390I CCNGG 5 cut(s) 45, 128, 288, 573, 795
Bme18I GGWCC 3 cut(s) 211, 216, 312
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 4 cut(s) 211, 216, 312, 746
BmiI GGNNCC 6 cut(s) 49, 108, 218, 314, 747, 791
BmrFI CCNGG 5 cut(s) 45, 128, 288, 573, 795
BmsI GCATC 1 cut(s) 804
BpiI GAAGAC 1 cut(s) 227
BpmI CTGGAG 2 cut(s) 819, 897
BpuEI CTTGAG 2 cut(s) 434, 457
BpuMI CCSGG 1 cut(s) 288
BsaHI GRCGYC 1 cut(s) 107
BsaJI CCNNGG 2 cut(s) 793, 794
BsaWI WCCGGW 2 cut(s) 213, 309
BsaXI ACNNNNNCTCC 4 cut(s) 284, 314, 822, 852
Bsc4I CCNNNNNNNGG 5 cut(s) 44, 309, 548, 578, 626
Bse1I ACTGG 2 cut(s) 836, 880
Bse3DI GCAATG 1 cut(s) 387
BseAI TCCGGA 2 cut(s) 213, 309
BseBI CCWGG 4 cut(s) 45, 128, 573, 795
BseDI CCNNGG 2 cut(s) 793, 794
BseGI GGATG 1 cut(s) 405
BseLI CCNNNNNNNGG 5 cut(s) 44, 309, 548, 578, 626
BseMI GCAATG 1 cut(s) 387
BseMII CTCAG 3 cut(s) 344, 513, 875
BseNI ACTGG 2 cut(s) 836, 880
BseSI GKGCMC 1 cut(s) 794
BseXI GCAGC 2 cut(s) 570, 698
BsgI GTGCAG 1 cut(s) 600
Bsh1236I CGCG 3 cut(s) 176, 230, 279
Bsh1285I CGRYCG 1 cut(s) 375
BshFI GGCC 1 cut(s) 748
BshNI GGYRCC 2 cut(s) 106, 789
BsiEI CGRYCG 1 cut(s) 375
BsiHKAI GWGCWC 2 cut(s) 824, 835
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 4 cut(s) 214, 287, 310, 666
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 5 cut(s) 44, 309, 548, 578, 626
BsmAI GTCTC 2 cut(s) 333, 650
BsmFI GGGAC 1 cut(s) 173
BsmI GAATGC 2 cut(s) 561, 972
BsnI GGCC 1 cut(s) 748
BsoBI CYCGRG 1 cut(s) 255
Bsp1286I GDGCHC 3 cut(s) 794, 824, 835
Bsp13I TCCGGA 2 cut(s) 213, 309
Bsp1407I TGTACA 1 cut(s) 649
Bsp143I GATC 5 cut(s) 358, 372, 409, 439, 491
Bsp68I TCGCGA 1 cut(s) 279
BspANI GGCC 1 cut(s) 748
BspCNI CTCAG 3 cut(s) 343, 512, 876
BspEI TCCGGA 2 cut(s) 213, 309
BspFNI CGCG 3 cut(s) 176, 230, 279
BspLI GGNNCC 6 cut(s) 49, 108, 218, 314, 747, 791
BspMAI CTGCAG 1 cut(s) 688
BspPI GGATC 1 cut(s) 366
BspT107I GGYRCC 2 cut(s) 106, 789
BsrBI CCGCTC 1 cut(s) 182
BsrDI GCAATG 1 cut(s) 387
BsrGI TGTACA 1 cut(s) 649
BsrI ACTGG 2 cut(s) 836, 880
BssECI CCNNGG 2 cut(s) 793, 794
BssMI GATC 5 cut(s) 358, 372, 409, 439, 491
BssNI GRCGYC 1 cut(s) 107
Bst2UI CCWGG 4 cut(s) 45, 128, 573, 795
Bst4CI ACNGT 1 cut(s) 114
Bst6I CTCTTC 1 cut(s) 172
BstACI GRCGYC 1 cut(s) 107
BstAPI GCANNNNNTGC 1 cut(s) 386
BstAUI TGTACA 1 cut(s) 649
BstC8I GCNNGC 3 cut(s) 180, 387, 868
BstDEI CTNAG 3 cut(s) 330, 499, 884
BstF5I GGATG 1 cut(s) 405
BstFNI CGCG 3 cut(s) 176, 230, 279
BstH2I RGCGCY 3 cut(s) 110, 540, 884
BstHHI GCGC 4 cut(s) 109, 178, 539, 883
BstKTI GATC 5 cut(s) 361, 375, 412, 442, 494
BstMAI GTCTC 2 cut(s) 333, 650
BstMBI GATC 5 cut(s) 358, 372, 409, 439, 491
BstMCI CGRYCG 1 cut(s) 375
BstMWI GCNNNNNNNGC 5 cut(s) 85, 377, 386, 839, 976
BstNI CCWGG 4 cut(s) 45, 128, 573, 795
BstNSI RCATGY 2 cut(s) 389, 571
BstSCI CCNGG 5 cut(s) 43, 126, 286, 571, 793
BstSFI CTRYAG 1 cut(s) 684
BstSLI GKGCMC 1 cut(s) 794
BstUI CGCG 3 cut(s) 176, 230, 279
BstV1I GCAGC 2 cut(s) 570, 698
BstV2I GAAGAC 1 cut(s) 227
BstX2I RGATCY 1 cut(s) 491
BstYI RGATCY 1 cut(s) 491
BsuI GTATCC 1 cut(s) 853
BsuRI GGCC 1 cut(s) 748
BtsCI GGATG 1 cut(s) 405
BtuMI TCGCGA 1 cut(s) 279
Cac8I GCNNGC 3 cut(s) 180, 387, 868
CfoI GCGC 4 cut(s) 109, 178, 539, 883
Cfr13I GGNCC 4 cut(s) 211, 216, 312, 746
CsiI ACCWGGT 1 cut(s) 126
Csp6I GTAC 2 cut(s) 650, 756
CviAII CATG 7 cut(s) 10, 386, 568, 626, 653, 717, 934
CviQI GTAC 2 cut(s) 650, 756
DdeI CTNAG 3 cut(s) 330, 499, 884
DinI GGCGCC 1 cut(s) 108
DpnI GATC 5 cut(s) 360, 374, 411, 441, 493
DpnII GATC 5 cut(s) 358, 372, 409, 439, 491
Eam1104I CTCTTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 172
Ecl136II GAGCTC 1 cut(s) 833
Eco24I GRGCYC 1 cut(s) 835
Eco47I GGWCC 3 cut(s) 211, 216, 312
Eco47III AGCGCT 1 cut(s) 882
Eco53kI GAGCTC 1 cut(s) 833
Eco88I CYCGRG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 833
EcoRII CCWGG 4 cut(s) 43, 126, 571, 793
EcoT22I ATGCAT 1 cut(s) 387
EcoT38I GRGCYC 1 cut(s) 835
EgeI GGCGCC 1 cut(s) 108
EheI GGCGCC 1 cut(s) 108
FaeI CATG 7 cut(s) 13, 389, 571, 629, 656, 720, 937
FaqI GGGAC 1 cut(s) 173
FatI CATG 7 cut(s) 9, 385, 567, 625, 652, 716, 933
FauI CCCGC 3 cut(s) 33, 187, 223
FauNDI CATATG 1 cut(s) 826
Fnu4HI GCNGC 3 cut(s) 15, 559, 687
FokI GGATG 1 cut(s) 412
FriOI GRGCYC 1 cut(s) 835
Fsp4HI GCNGC 3 cut(s) 15, 559, 687
FspBI CTAG 3 cut(s) 443, 459, 513
GlaI GCGC 4 cut(s) 108, 177, 538, 882
GluI GCNGC 3 cut(s) 15, 559, 687
GsuI CTGGAG 2 cut(s) 819, 897
HaeII RGCGCY 3 cut(s) 110, 540, 884
HaeIII GGCC 1 cut(s) 748
HapII CCGG 4 cut(s) 214, 287, 310, 666
HhaI GCGC 4 cut(s) 109, 178, 539, 883
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 7 cut(s) 13, 389, 571, 629, 656, 720, 937
Hin6I GCGC 4 cut(s) 107, 176, 537, 881
HinP1I GCGC 4 cut(s) 107, 176, 537, 881
HincII GTYRAC 2 cut(s) 426, 918
HindII GTYRAC 2 cut(s) 426, 918
HinfI GANTC 4 cut(s) 296, 545, 772, 886
HpaII CCGG 4 cut(s) 214, 287, 310, 666
Hpy166II GTNNAC 3 cut(s) 55, 426, 918
Hpy188I TCNGA 2 cut(s) 393, 502
Hpy188III TCNNGA 9 cut(s) 214, 239, 278, 310, 413, 474, 542, 857, 957
Hpy8I GTNNAC 3 cut(s) 55, 426, 918
Hpy99I CGWCG 2 cut(s) 103, 209
HpyAV CCTTC 1 cut(s) 923
HpyCH4III ACNGT 1 cut(s) 114
HpyCH4IV ACGT 1 cut(s) 672
HpyCH4V TGCA 6 cut(s) 385, 617, 686, 817, 842, 895
HpyF10VI GCNNNNNNNGC 5 cut(s) 85, 377, 386, 839, 976
HpyF3I CTNAG 3 cut(s) 330, 499, 884
HpySE526I ACGT 1 cut(s) 672
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 7 cut(s) 13, 389, 571, 629, 656, 720, 937
HspAI GCGC 4 cut(s) 107, 176, 537, 881
KasI GGCGCC 1 cut(s) 106
Kpn2I TCCGGA 2 cut(s) 213, 309
Kzo9I GATC 5 cut(s) 358, 372, 409, 439, 491
LmnI GCTCC 6 cut(s) 53, 544, 760, 830, 838, 878
Lsp1109I GCAGC 2 cut(s) 570, 698
LweI GCATC 1 cut(s) 804
MabI ACCWGGT 1 cut(s) 126
MaeI CTAG 3 cut(s) 443, 459, 513
MaeII ACGT 1 cut(s) 672
MaeIII GTNAC 2 cut(s) 114, 290
MalI GATC 5 cut(s) 360, 374, 411, 441, 493
MbiI CCGCTC 1 cut(s) 182
MboI GATC 5 cut(s) 358, 372, 409, 439, 491
MboII GAAGA 5 cut(s) 159, 227, 254, 823, 985
MfeI CAATTG 1 cut(s) 660
MflI RGATCY 1 cut(s) 491
MhlI GDGCHC 3 cut(s) 794, 824, 835
MluCI AATT 6 cut(s) 454, 583, 660, 679, 806, 903
Mly113I GGCGCC 1 cut(s) 107
MlyI GAGTC 2 cut(s) 305, 895
MnlI CCTC 9 cut(s) 45, 105, 156, 202, 208, 281, 310, 317, 509
Mph1103I ATGCAT 1 cut(s) 387
MroI TCCGGA 2 cut(s) 213, 309
MslI CAYNNNNRTG 1 cut(s) 566
MspI CCGG 4 cut(s) 214, 287, 310, 666
MspR9I CCNGG 5 cut(s) 45, 128, 288, 573, 795
MunI CAATTG 1 cut(s) 660
Mva1269I GAATGC 2 cut(s) 561, 972
MvaI CCWGG 4 cut(s) 45, 128, 573, 795
MvnI CGCG 3 cut(s) 176, 230, 279
MwoI GCNNNNNNNGC 5 cut(s) 85, 377, 386, 839, 976
NarI GGCGCC 1 cut(s) 107
NciI CCSGG 1 cut(s) 288
NdeI CATATG 1 cut(s) 826
NdeII GATC 5 cut(s) 358, 372, 409, 439, 491
NlaIII CATG 7 cut(s) 13, 389, 571, 629, 656, 720, 937
NlaIV GGNNCC 6 cut(s) 49, 108, 218, 314, 747, 791
NruI TCGCGA 1 cut(s) 279
NsiI ATGCAT 1 cut(s) 387
NspI RCATGY 2 cut(s) 389, 571
PaeI GCATGC 1 cut(s) 389
PasI CCCWGGG 1 cut(s) 794
PctI GAATGC 2 cut(s) 561, 972
PfeI GAWTC 2 cut(s) 545, 772
PflFI GACNNNGTC 1 cut(s) 209
PflMI CCANNNNNTGG 1 cut(s) 626
PkrI GCNGC 3 cut(s) 16, 560, 688
Ple19I CGATCG 1 cut(s) 375
PleI GAGTC 2 cut(s) 304, 894
PluTI GGCGCC 1 cut(s) 110
PpsI GAGTC 2 cut(s) 304, 894
Psp124BI GAGCTC 1 cut(s) 835
Psp6I CCWGG 4 cut(s) 43, 126, 571, 793
PspGI CCWGG 4 cut(s) 43, 126, 571, 793
PspN4I GGNNCC 6 cut(s) 49, 108, 218, 314, 747, 791
PspPI GGNCC 4 cut(s) 211, 216, 312, 746
PstI CTGCAG 1 cut(s) 688
PsuI RGATCY 1 cut(s) 491
PsyI GACNNNGTC 1 cut(s) 209
PvuI CGATCG 1 cut(s) 375
RruI TCGCGA 1 cut(s) 279
RsaI GTAC 2 cut(s) 651, 757
RsaNI GTAC 2 cut(s) 650, 756
RseI CAYNNNNRTG 1 cut(s) 566
SacI GAGCTC 1 cut(s) 835
SatI GCNGC 3 cut(s) 15, 559, 687
Sau3AI GATC 5 cut(s) 358, 372, 409, 439, 491
Sau96I GGNCC 4 cut(s) 211, 216, 312, 746
SchI GAGTC 2 cut(s) 305, 895
ScrFI CCNGG 5 cut(s) 45, 128, 288, 573, 795
SduI GDGCHC 3 cut(s) 794, 824, 835
SexAI ACCWGGT 1 cut(s) 126
SfaNI GCATC 1 cut(s) 804
SfcI CTRYAG 1 cut(s) 684
SfoI GGCGCC 1 cut(s) 108
SinI GGWCC 3 cut(s) 211, 216, 312
SmiMI CAYNNNNRTG 1 cut(s) 566
SmlI CTYRAG 2 cut(s) 413, 472
SmoI CTYRAG 2 cut(s) 413, 472
SphI GCATGC 1 cut(s) 389
Sse9I AATT 6 cut(s) 454, 583, 660, 679, 806, 903
SspDI GGCGCC 1 cut(s) 106
SspMI CTAG 3 cut(s) 443, 459, 513
SstI GAGCTC 1 cut(s) 835
StyD4I CCNGG 5 cut(s) 43, 126, 286, 571, 793
TaaI ACNGT 1 cut(s) 114
TaiI ACGT 1 cut(s) 675
TasI AATT 6 cut(s) 454, 583, 660, 679, 806, 903
TatI WGTACW 1 cut(s) 649
TfiI GAWTC 2 cut(s) 545, 772
TseI GCWGC 3 cut(s) 14, 558, 686
TspDTI ATGAA 3 cut(s) 501, 510, 790
TspGWI ACGGA 3 cut(s) 40, 87, 773
Tth111I GACNNNGTC 1 cut(s) 209
Van91I CCANNNNNTGG 1 cut(s) 626
VpaK11BI GGWCC 3 cut(s) 211, 216, 312
XceI RCATGY 2 cut(s) 389, 571
XcmI CCANNNNNNNNNTGG 1 cut(s) 958
XspI CTAG 3 cut(s) 443, 459, 513
Zsp2I ATGCAT 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.