Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007111

Physical Location & Seq

Genomic Coordinates Reverse (-)

17434303 .. 17437356

Gene Structure 3054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017483

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGACGAGATGGCCGCCTATTACCCTCCGCCGCCTCCGCCACCAGGCTCCGTCCACTATCCATACTACCACCACCAGCCAACTCAACCGCCTGCCCCCGTGGCCCCTCCGCCGCCGCCGCCGCAGCAGCACCACCACTTGGTTCATCAGCCCTACTACCCTCCCCAGCCTCAGCCTTACGCTCCCTACGCGCCGCCACTCGTCGCCCAGGCCGCCTACGACGAGGTCCGGACCCTCTTCGTGGCCGGCCTACCCGAAGATGTCAAGCCCCGAGAAATCTACAACCTCTTCCGTGAGTTTCCCGGTTACGAGTCCTCCCACCTCCGAACCCCCACCGAGAAAACTCAGCCTTTTGCGTTTGCGGTGTTCTTGGACCAGCAATCTGCGATCGGAGCAATGCAAGCACTGAATGGGATGGTATTTGATCTTGAGAAGGGGTCGACATTATATATAGATCTAGCAAAATCTAATTCTAGGTCCAAGCGCTCAAGAACAGACGATGAAAGATCTGGCTCGGATAAGAAAGCTAGAGGTTCATCATATTCAAGGGCCACTTCTGATCCTGGTGTTGGCAGCATTCACATGCCTGGAATGGGTAATTCTGCTTACAACATGATTGGTTATCCATCTGCACCAAGTCGTGGCAGCTTCAGTGGCAGTGGTGTAAACGAGCCAATAGCCTCAAACATGAATAGTTCTTCAGCGCAACATTTTCCACAAAACAATACTCCATGCCCAACACTTTTTGTGGCTAATTTGGGGCCAACTTGTACGGAGCAAGAGCTAATTCAAGTATTTTCGAGGTGCCCTGGGTTTATAAAATTGAAGATGCAGAGCACATATGGGGCTCCAGTTGCATTTGTTGATTTTCAGGATACTGCTAGCTCAACTGGCGCACTGGGTCATCTGCAGGGCACAATTCTCTACTCGTCAACATCTGGAGAGGGCATGAGATTAGAGTTTGCCAAATCACGAATGGGAATGCGGAAGAAGCCGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035239 GO:0035295 GO:0042127 GO:0042802 GO:0042803 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046983 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048660 GO:0048661 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051147 GO:0051148 GO:0051150 GO:0051151 GO:0051171 GO:0051252 GO:0055123 GO:0060255 GO:0065007 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

334

Amino Acids

36.37

Weight (kDa)

8.3

Isoelectric Point (pI)

58.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	79 - 142	1.3e-11	RNA recognition motif
RRM_1	PF00076	248 - 311	9.3e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42240 AT2G42240 AT2G42240
fragaria_vesca	FvH4_1g16380 FvH4_1g16380
malus_domestica	MD02G1176300.v1.1 MD15G1286700.v1.1
prunus_persica	Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1
pyrus_communis	pycom02g14250 pycom15g25000
rosa_chinensis	RchiOBHm_Chr2g0106251
rosa_laevigata	RLG00000017483
rosa_multiflora	Rmu_sc0008603.1_g000013
rosa_roxburghii	Rroxscaffold_2G00137330
rosa_rugosa	Rorug02G0133700 Rorug02G0133800
rosa_samantha	Rh2AG184900 Rh2BG195200 Rh2CG190000 Rh2DG191100
rosa_wichuraiana	Rw2G014440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	818
AccB1I	GGYRCC	1 cut(s)	804
AccB7I	CCANNNNNTGG	2 cut(s)	139, 641
AccI	GTMKAC	1 cut(s)	440
AccII	CGCG	1 cut(s)	191
AccIII	TCCGGA	1 cut(s)	228
AclWI	GGATC	1 cut(s)	554
AcoI	YGGCCR	2 cut(s)	12, 243
AcuI	CTGAAG	2 cut(s)	634, 684
AfaI	GTAC	1 cut(s)	772
AfeI	AGCGCT	1 cut(s)	485
AfiI	CCNNNNNNNGG	6 cut(s)	44, 139, 241, 569, 593, 641
AgsI	TTSAA	3 cut(s)	546, 791, 826
AjnI	CCWGG	5 cut(s)	43, 207, 562, 586, 808
AluBI	AGCT	4 cut(s)	527, 648, 784, 885
AluI	AGCT	4 cut(s)	527, 648, 784, 885
Alw21I	GWGCWC	1 cut(s)	839
AlwI	GGATC	1 cut(s)	554
Ama87I	CYCGRG	1 cut(s)	270
Aor13HI	TCCGGA	1 cut(s)	228
Aor51HI	AGCGCT	1 cut(s)	485
AoxI	GGCC	7 cut(s)	12, 102, 210, 243, 247, 549, 761
ApeKI	GCWGC	4 cut(s)	124, 127, 573, 645
AspLEI	GCGC	4 cut(s)	193, 486, 706, 896
AspS9I	GGNCC	7 cut(s)	103, 226, 231, 373, 477, 549, 761
AsuC2I	CCSGG	1 cut(s)	303
AsuNHI	GCTAGC	1 cut(s)	881
AvaI	CYCGRG	1 cut(s)	270
AvaII	GGWCC	4 cut(s)	226, 231, 373, 477
BaeGI	GKGCMC	2 cut(s)	809, 917
BanI	GGYRCC	1 cut(s)	804
BanII	GRGCYC	1 cut(s)	850
Bbv12I	GWGCWC	1 cut(s)	839
BbvCI	CCTCAGC	1 cut(s)	171
BbvI	GCAGC	4 cut(s)	136, 139, 585, 657
BccI	CCATC	3 cut(s)	4, 409, 634
BciT130I	CCWGG	5 cut(s)	45, 209, 564, 588, 810
BciVI	GTATCC	1 cut(s)	868
BcnI	CCSGG	1 cut(s)	303
BfaI	CTAG	4 cut(s)	458, 474, 528, 882
BfmI	CTRYAG	1 cut(s)	908
BfoI	RGCGCY	1 cut(s)	487
BfuI	GTATCC	1 cut(s)	868
BglI	GCCNNNNNGGC	1 cut(s)	101
BglII	AGATCT	2 cut(s)	454, 506
Bme1390I	CCNGG	6 cut(s)	45, 209, 303, 564, 588, 810
Bme18I	GGWCC	4 cut(s)	226, 231, 373, 477
BmeT110I	CYCGRG	1 cut(s)	270
BmgT120I	GGNCC	7 cut(s)	103, 226, 231, 373, 477, 549, 761
BmiI	GGNNCC	6 cut(s)	49, 105, 233, 762, 806, 849
BmrFI	CCNGG	6 cut(s)	45, 209, 303, 564, 588, 810
BmrI	ACTGGG	1 cut(s)	908
BmsI	GCATC	1 cut(s)	819
BmtI	GCTAGC	1 cut(s)	885
BmuI	ACTGGG	1 cut(s)	908
BpmI	CTGGAG	2 cut(s)	834, 960
Bpu10I	CCTNAGC	1 cut(s)	171
BpuEI	CTTGAG	2 cut(s)	449, 472
BpuMI	CCSGG	1 cut(s)	303
BsaJI	CCNNGG	4 cut(s)	99, 207, 808, 809
BsaWI	WCCGGW	1 cut(s)	228
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	6 cut(s)	44, 139, 241, 569, 593, 641
Bse118I	RCCGGY	1 cut(s)	245
Bse1I	ACTGG	3 cut(s)	851, 895, 903
Bse3DI	GCAATG	1 cut(s)	402
BseAI	TCCGGA	1 cut(s)	228
BseBI	CCWGG	5 cut(s)	45, 209, 564, 588, 810
BseDI	CCNNGG	4 cut(s)	99, 207, 808, 809
BseGI	GGATG	1 cut(s)	420
BseLI	CCNNNNNNNGG	6 cut(s)	44, 139, 241, 569, 593, 641
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	2 cut(s)	185, 359
BseNI	ACTGG	3 cut(s)	851, 895, 903
BseSI	GKGCMC	2 cut(s)	809, 917
BseXI	GCAGC	4 cut(s)	136, 139, 585, 657
BseYI	CCCAGC	1 cut(s)	165
BsgI	GTGCAG	1 cut(s)	615
Bsh1236I	CGCG	1 cut(s)	191
Bsh1285I	CGRYCG	1 cut(s)	390
BshFI	GGCC	7 cut(s)	14, 104, 212, 245, 249, 551, 763
BshNI	GGYRCC	1 cut(s)	804
BsiEI	CGRYCG	1 cut(s)	390
BsiHKAI	GWGCWC	1 cut(s)	839
BsiHKCI	CYCGRG	1 cut(s)	270
BsiSI	CCGG	3 cut(s)	229, 246, 303
BslI	CCNNNNNNNGG	6 cut(s)	44, 139, 241, 569, 593, 641
BsmI	GAATGC	2 cut(s)	576, 987
BsnI	GGCC	7 cut(s)	14, 104, 212, 245, 249, 551, 763
BsoBI	CYCGRG	1 cut(s)	270
Bsp1286I	GDGCHC	4 cut(s)	809, 839, 850, 917
Bsp13I	TCCGGA	1 cut(s)	228
Bsp143I	GATC	5 cut(s)	387, 424, 454, 506, 559
BspANI	GGCC	7 cut(s)	14, 104, 212, 245, 249, 551, 763
BspCNI	CTCAG	2 cut(s)	184, 358
BspEI	TCCGGA	1 cut(s)	228
BspFNI	CGCG	1 cut(s)	191
BspLI	GGNNCC	6 cut(s)	49, 105, 233, 762, 806, 849
BspMAI	CTGCAG	1 cut(s)	912
BspOI	GCTAGC	1 cut(s)	885
BspPI	GGATC	1 cut(s)	554
BspT107I	GGYRCC	1 cut(s)	804
BsrDI	GCAATG	1 cut(s)	402
BsrFI	RCCGGY	1 cut(s)	245
BsrI	ACTGG	3 cut(s)	851, 895, 903
BssAI	RCCGGY	1 cut(s)	245
BssECI	CCNNGG	4 cut(s)	99, 207, 808, 809
BssMI	GATC	5 cut(s)	387, 424, 454, 506, 559
Bst2UI	CCWGG	5 cut(s)	45, 209, 564, 588, 810
Bst6I	CTCTTC	2 cut(s)	242, 293
BstC8I	GCNNGC	4 cut(s)	93, 247, 402, 883
BstDEI	CTNAG	2 cut(s)	171, 345
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	420
BstFNI	CGCG	1 cut(s)	191
BstH2I	RGCGCY	1 cut(s)	487
BstHHI	GCGC	4 cut(s)	193, 486, 706, 896
BstKTI	GATC	5 cut(s)	390, 427, 457, 509, 562
BstMBI	GATC	5 cut(s)	387, 424, 454, 506, 559
BstMCI	CGRYCG	1 cut(s)	390
BstNI	CCWGG	5 cut(s)	45, 209, 564, 588, 810
BstNSI	RCATGY	1 cut(s)	586
BstSCI	CCNGG	6 cut(s)	43, 207, 301, 562, 586, 808
BstSFI	CTRYAG	1 cut(s)	908
BstSLI	GKGCMC	2 cut(s)	809, 917
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	4 cut(s)	136, 139, 585, 657
BstX2I	RGATCY	2 cut(s)	454, 506
BstYI	RGATCY	2 cut(s)	454, 506
BsuI	GTATCC	1 cut(s)	868
BsuRI	GGCC	7 cut(s)	14, 104, 212, 245, 249, 551, 763
BtgI	CCRYGG	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	420
BtsI	GCAGTG	1 cut(s)	664
BtsIMutI	CAGTG	4 cut(s)	404, 658, 664, 896
Cac8I	GCNNGC	4 cut(s)	93, 247, 402, 883
CfoI	GCGC	4 cut(s)	193, 486, 706, 896
Cfr10I	RCCGGY	1 cut(s)	245
Cfr13I	GGNCC	7 cut(s)	103, 226, 231, 373, 477, 549, 761
Csp6I	GTAC	1 cut(s)	771
CviAII	CATG	5 cut(s)	583, 613, 688, 732, 949
CviQI	GTAC	1 cut(s)	771
DdeI	CTNAG	2 cut(s)	171, 345
DpnI	GATC	5 cut(s)	389, 426, 456, 508, 561
DpnII	GATC	5 cut(s)	387, 424, 454, 506, 559
EaeI	YGGCCR	2 cut(s)	12, 243
Eam1104I	CTCTTC	2 cut(s)	242, 293
EarI	CTCTTC	2 cut(s)	242, 293
EciI	GGCGGA	3 cut(s)	18, 27, 99
Eco24I	GRGCYC	1 cut(s)	850
Eco47I	GGWCC	4 cut(s)	226, 231, 373, 477
Eco47III	AGCGCT	1 cut(s)	485
Eco57I	CTGAAG	2 cut(s)	634, 684
Eco88I	CYCGRG	1 cut(s)	270
EcoRII	CCWGG	5 cut(s)	43, 207, 562, 586, 808
EcoT38I	GRGCYC	1 cut(s)	850
FaeI	CATG	5 cut(s)	586, 616, 691, 735, 952
FalI	AAGNNNNNCTT	2 cut(s)	538, 570
FatI	CATG	5 cut(s)	582, 612, 687, 731, 948
FauNDI	CATATG	1 cut(s)	841
FblI	GTMKAC	1 cut(s)	440
FokI	GGATG	1 cut(s)	427
FriOI	GRGCYC	1 cut(s)	850
FseI	GGCCGGCC	1 cut(s)	249
FspBI	CTAG	4 cut(s)	458, 474, 528, 882
GlaI	GCGC	4 cut(s)	192, 485, 705, 895
GsaI	CCCAGC	1 cut(s)	169
GsuI	CTGGAG	2 cut(s)	834, 960
HaeII	RGCGCY	1 cut(s)	487
HaeIII	GGCC	7 cut(s)	14, 104, 212, 245, 249, 551, 763
HapII	CCGG	3 cut(s)	229, 246, 303
HhaI	GCGC	4 cut(s)	193, 486, 706, 896
Hin1II	CATG	5 cut(s)	586, 616, 691, 735, 952
Hin6I	GCGC	4 cut(s)	191, 484, 704, 894
HinP1I	GCGC	4 cut(s)	191, 484, 704, 894
HincII	GTYRAC	2 cut(s)	441, 933
HindII	GTYRAC	2 cut(s)	441, 933
HinfI	GANTC	1 cut(s)	311
HpaII	CCGG	3 cut(s)	229, 246, 303
Hpy166II	GTNNAC	4 cut(s)	55, 441, 667, 933
Hpy188I	TCNGA	4 cut(s)	326, 392, 517, 559
Hpy188III	TCNNGA	6 cut(s)	229, 428, 489, 872, 939, 972
Hpy8I	GTNNAC	4 cut(s)	55, 441, 667, 933
Hpy99I	CGWCG	2 cut(s)	206, 224
HpyAV	CCTTC	1 cut(s)	427
HpyCH4V	TGCA	5 cut(s)	400, 632, 832, 857, 910
HpyF3I	CTNAG	2 cut(s)	171, 345
Hsp92II	CATG	5 cut(s)	586, 616, 691, 735, 952
HspAI	GCGC	4 cut(s)	191, 484, 704, 894
Kpn2I	TCCGGA	1 cut(s)	228
KroI	GCCGGC	1 cut(s)	245
KroNI	GCCGGC	1 cut(s)	247
Kzo9I	GATC	5 cut(s)	387, 424, 454, 506, 559
LmnI	GCTCC	5 cut(s)	53, 187, 392, 775, 853
Lsp1109I	GCAGC	4 cut(s)	136, 139, 585, 657
LweI	GCATC	1 cut(s)	819
MaeI	CTAG	4 cut(s)	458, 474, 528, 882
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	5 cut(s)	389, 426, 456, 508, 561
MboI	GATC	5 cut(s)	387, 424, 454, 506, 559
MboII	GAAGA	6 cut(s)	229, 269, 280, 690, 838, 1000
MflI	RGATCY	2 cut(s)	454, 506
MhlI	GDGCHC	4 cut(s)	809, 839, 850, 917
MluCI	AATT	6 cut(s)	469, 598, 754, 786, 821, 918
MlyI	GAGTC	1 cut(s)	320
MroI	TCCGGA	1 cut(s)	228
MroNI	GCCGGC	1 cut(s)	245
MslI	CAYNNNNRTG	1 cut(s)	581
MspI	CCGG	3 cut(s)	229, 246, 303
MspR9I	CCNGG	6 cut(s)	45, 209, 303, 564, 588, 810
Mva1269I	GAATGC	2 cut(s)	576, 987
MvaI	CCWGG	5 cut(s)	45, 209, 564, 588, 810
MvnI	CGCG	1 cut(s)	191
NaeI	GCCGGC	1 cut(s)	247
NciI	CCSGG	1 cut(s)	303
NdeI	CATATG	1 cut(s)	841
NdeII	GATC	5 cut(s)	387, 424, 454, 506, 559
NgoMIV	GCCGGC	1 cut(s)	245
NheI	GCTAGC	1 cut(s)	881
NlaIII	CATG	5 cut(s)	586, 616, 691, 735, 952
NlaIV	GGNNCC	6 cut(s)	49, 105, 233, 762, 806, 849
NspI	RCATGY	1 cut(s)	586
PasI	CCCWGGG	1 cut(s)	809
PctI	GAATGC	2 cut(s)	576, 987
PdiI	GCCGGC	1 cut(s)	247
PflFI	GACNNNGTC	1 cut(s)	224
PflMI	CCANNNNNTGG	2 cut(s)	139, 641
Ple19I	CGATCG	1 cut(s)	390
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
PsiI	TTATAA	1 cut(s)	818
Psp6I	CCWGG	5 cut(s)	43, 207, 562, 586, 808
PspFI	CCCAGC	1 cut(s)	165
PspGI	CCWGG	5 cut(s)	43, 207, 562, 586, 808
PspN4I	GGNNCC	6 cut(s)	49, 105, 233, 762, 806, 849
PspPI	GGNCC	7 cut(s)	103, 226, 231, 373, 477, 549, 761
PstI	CTGCAG	1 cut(s)	912
PsuI	RGATCY	2 cut(s)	454, 506
PsyI	GACNNNGTC	1 cut(s)	224
PvuI	CGATCG	1 cut(s)	390
RigI	GGCCGGCC	1 cut(s)	249
RsaI	GTAC	1 cut(s)	772
RsaNI	GTAC	1 cut(s)	771
RseI	CAYNNNNRTG	1 cut(s)	581
SalI	GTCGAC	1 cut(s)	439
Sau3AI	GATC	5 cut(s)	387, 424, 454, 506, 559
Sau96I	GGNCC	7 cut(s)	103, 226, 231, 373, 477, 549, 761
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	6 cut(s)	45, 209, 303, 564, 588, 810
SduI	GDGCHC	4 cut(s)	809, 839, 850, 917
SfaNI	GCATC	1 cut(s)	819
SfcI	CTRYAG	1 cut(s)	908
SinI	GGWCC	4 cut(s)	226, 231, 373, 477
SmiMI	CAYNNNNRTG	1 cut(s)	581
SmlI	CTYRAG	2 cut(s)	428, 487
SmoI	CTYRAG	2 cut(s)	428, 487
Sse9I	AATT	6 cut(s)	469, 598, 754, 786, 821, 918
SspMI	CTAG	4 cut(s)	458, 474, 528, 882
StyD4I	CCNGG	6 cut(s)	43, 207, 301, 562, 586, 808
TaqI	TCGA	2 cut(s)	440, 800
TasI	AATT	6 cut(s)	469, 598, 754, 786, 821, 918
TauI	GCSGC	8 cut(s)	17, 34, 115, 118, 121, 124, 196, 215
TscAI	CASTG	4 cut(s)	411, 658, 664, 903
TseI	GCWGC	4 cut(s)	124, 127, 573, 645
TspDTI	ATGAA	4 cut(s)	134, 516, 525, 704
TspGWI	ACGGA	3 cut(s)	40, 281, 788
TspRI	CASTG	4 cut(s)	411, 658, 664, 903
Tth111I	GACNNNGTC	1 cut(s)	224
Van91I	CCANNNNNTGG	2 cut(s)	139, 641
VpaK11BI	GGWCC	4 cut(s)	226, 231, 373, 477
XceI	RCATGY	1 cut(s)	586
XcmI	CCANNNNNNNNNTGG	1 cut(s)	973
XmiI	GTMKAC	1 cut(s)	440
XspI	CTAG	4 cut(s)	458, 474, 528, 882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.