Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007111

Physical Location & Seq

Genomic Coordinates Reverse (-)

19354366 .. 19357692

Gene Structure 3327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g25000.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGACGATATGGCTGCCTATTACCCGCCACCGCCTCAGCACTACCTGGTTCAGCCCTACTTCCCTCAACAGCCACCACCTTTCGCTTCCTACGTTGCCCCTCGGATCCCCCAACCCTCATACGACGAGCTCCGAACCCTATTCGTCGCCGGTCTCTCAGAAGATGTCAAGCCCCGCGAAATCTACAACCTCTTCCGCGAGTTTCCGGGTTACGAGTCCTCCCACCTCCGAACCCCCACCGGAAAGTCTCAGCCTTTTGCTTTCGCGGTGTTCTTAGATCAGCAGTCTGCCATTGGAGCAATGCATGCGCTGAATGGAATGGTGTTTGATCTTGAGAAGGGATCAAAACTATATATTGATCTAGCAAAATCTAATTCTAGGTCAAAGCGCTCAAGAACAGATGATGAAAGACCTAGCTCAGATAAGAGAGCTAGAAGTTCGTCATATTCTAGGGGAACTCCTGATTCTGCAGGTGTTGGCAGCATTCACGTGCCTGGAATGGGTAATTCTGCTTACAACATGATTGGTTATCCATCTGCACCAAGTCATGGCAGCTTCAATGACAGAGCTGTACACGAGACAATAGCCCCAAACATGAATAATTCTTCAGCACAGCATTTTCCACAAAATAATACTCCATGTCCAACACTTTTCGTGGCTAACTTGGGGCCAACATGTACAGAGCAAGAGCTAATTCAAGTGTTTTCAAGGTGCCCTGGGTTCATAAAATTGAAGATGCAAAGCACATGTGGAGCTCCAGTTGCTTTTGTTGATTTTCAGGATACTGCCTGCTCAACTGGAGCGCTGAGTCGTCTGCAAGGCACATTTCTCTACTCTTCAACAACTGGCGAAGGCATGAGATTAGAATACGCCAGATCACGAATGGGAATGCGTAAGAAGCCGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035239 GO:0035295 GO:0042127 GO:0042802 GO:0042803 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046983 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048660 GO:0048661 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051147 GO:0051148 GO:0051150 GO:0051151 GO:0051171 GO:0051252 GO:0055123 GO:0060255 GO:0065007 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

303

Amino Acids

33.35

Weight (kDa)

8.88

Isoelectric Point (pI)

57.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42240 AT2G42240 AT2G42240
fragaria_vesca	FvH4_1g16380 FvH4_1g16380
malus_domestica	MD02G1176300.v1.1 MD15G1286700.v1.1
prunus_persica	Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1
pyrus_communis	pycom02g14250 pycom15g25000
rosa_chinensis	RchiOBHm_Chr2g0106251
rosa_laevigata	RLG00000017483
rosa_multiflora	Rmu_sc0008603.1_g000013
rosa_roxburghii	Rroxscaffold_2G00137330
rosa_rugosa	Rorug02G0133700 Rorug02G0133800
rosa_samantha	Rh2AG184900 Rh2BG195200 Rh2CG190000 Rh2DG191100
rosa_wichuraiana	Rw2G014440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	461
Acc36I	ACCTGC	1 cut(s)	461
AccB1I	GGYRCC	1 cut(s)	711
AccB7I	CCANNNNNTGG	1 cut(s)	548
AccII	CGCG	3 cut(s)	177, 198, 266
AciI	CCGC	5 cut(s)	26, 32, 175, 196, 266
AclWI	GGATC	3 cut(s)	100, 113, 349
AcuI	CTGAAG	1 cut(s)	591
AcvI	CACGTG	1 cut(s)	490
AfaI	GTAC	2 cut(s)	573, 679
AfeI	AGCGCT	2 cut(s)	389, 804
AfiI	CCNNNNNNNGG	2 cut(s)	500, 548
AflIII	ACRYGT	2 cut(s)	674, 746
AgsI	TTSAA	5 cut(s)	559, 698, 708, 733, 840
AjnI	CCWGG	3 cut(s)	45, 493, 715
AluBI	AGCT	7 cut(s)	130, 417, 431, 555, 569, 691, 755
AluI	AGCT	7 cut(s)	130, 417, 431, 555, 569, 691, 755
Alw21I	GWGCWC	2 cut(s)	132, 757
Alw26I	GTCTC	3 cut(s)	158, 252, 572
AlwI	GGATC	3 cut(s)	100, 113, 349
Aor51HI	AGCGCT	2 cut(s)	389, 804
AoxI	GGCC	1 cut(s)	668
ApeKI	GCWGC	3 cut(s)	14, 480, 552
AspLEI	GCGC	3 cut(s)	310, 390, 805
AspS9I	GGNCC	1 cut(s)	668
AsuC2I	CCSGG	1 cut(s)	207
BaeGI	GKGCMC	1 cut(s)	716
BamHI	GGATCC	1 cut(s)	105
BanI	GGYRCC	1 cut(s)	711
BanII	GRGCYC	2 cut(s)	132, 757
BauI	CACGAG	1 cut(s)	575
BbrPI	CACGTG	1 cut(s)	490
Bbv12I	GWGCWC	2 cut(s)	132, 757
BbvCI	CCTCAGC	1 cut(s)	36
BbvI	GCAGC	2 cut(s)	492, 564
BccI	CCATC	1 cut(s)	541
BcgI	CGANNNNNNTGC	1 cut(s)	30
BciT130I	CCWGG	3 cut(s)	47, 495, 717
BciVI	GTATCC	1 cut(s)	775
BcnI	CCSGG	1 cut(s)	207
BcoDI	GTCTC	3 cut(s)	158, 252, 572
BfaI	CTAG	5 cut(s)	362, 378, 414, 432, 450
BfmI	CTRYAG	1 cut(s)	468
BfoI	RGCGCY	2 cut(s)	391, 806
BfuAI	ACCTGC	1 cut(s)	461
BfuI	GTATCC	1 cut(s)	775
BisI	GCNGC	3 cut(s)	15, 481, 553
BlsI	GCNGC	3 cut(s)	16, 482, 554
Bme1390I	CCNGG	4 cut(s)	47, 207, 495, 717
BmgT120I	GGNCC	1 cut(s)	668
BmiI	GGNNCC	3 cut(s)	107, 669, 713
BmrFI	CCNGG	4 cut(s)	47, 207, 495, 717
BmsI	GCATC	1 cut(s)	726
BpmI	CTGGAG	2 cut(s)	741, 819
Bpu10I	CCTNAGC	1 cut(s)	36
BpuEI	CTTGAG	2 cut(s)	353, 376
BpuMI	CCSGG	1 cut(s)	207
BsaAI	YACGTR	1 cut(s)	490
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	3 cut(s)	101, 715, 716
BsaWI	WCCGGW	1 cut(s)	239
BsaXI	ACNNNNNCTCC	4 cut(s)	203, 233, 744, 774
Bsc4I	CCNNNNNNNGG	2 cut(s)	500, 548
Bse118I	RCCGGY	1 cut(s)	149
Bse1I	ACTGG	3 cut(s)	758, 802, 850
Bse3DI	GCAATG	1 cut(s)	306
BseBI	CCWGG	3 cut(s)	47, 495, 717
BseDI	CCNNGG	3 cut(s)	101, 715, 716
BseLI	CCNNNNNNNGG	2 cut(s)	500, 548
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	5 cut(s)	50, 171, 263, 432, 797
BseNI	ACTGG	3 cut(s)	758, 802, 850
BseSI	GKGCMC	1 cut(s)	716
BseXI	GCAGC	2 cut(s)	492, 564
BsgI	GTGCAG	1 cut(s)	522
Bsh1236I	CGCG	3 cut(s)	177, 198, 266
BshFI	GGCC	1 cut(s)	670
BshNI	GGYRCC	1 cut(s)	711
BsiHKAI	GWGCWC	2 cut(s)	132, 757
BsiSI	CCGG	3 cut(s)	150, 206, 240
BslI	CCNNNNNNNGG	2 cut(s)	500, 548
BsmAI	GTCTC	3 cut(s)	158, 252, 572
BsmI	GAATGC	2 cut(s)	483, 894
BsnI	GGCC	1 cut(s)	670
Bso31I	GGTCTC	1 cut(s)	158
Bsp1286I	GDGCHC	3 cut(s)	132, 716, 757
Bsp1407I	TGTACA	2 cut(s)	571, 677
Bsp143I	GATC	6 cut(s)	105, 277, 328, 341, 358, 875
BspACI	CCGC	5 cut(s)	26, 32, 175, 196, 266
BspANI	GGCC	1 cut(s)	670
BspCNI	CTCAG	5 cut(s)	49, 170, 262, 431, 798
BspFNI	CGCG	3 cut(s)	177, 198, 266
BspLI	GGNNCC	3 cut(s)	107, 669, 713
BspMAI	CTGCAG	1 cut(s)	472
BspMI	ACCTGC	1 cut(s)	461
BspPI	GGATC	3 cut(s)	100, 113, 349
BspT107I	GGYRCC	1 cut(s)	711
BspTNI	GGTCTC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	306
BsrFI	RCCGGY	1 cut(s)	149
BsrGI	TGTACA	2 cut(s)	571, 677
BsrI	ACTGG	3 cut(s)	758, 802, 850
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	3 cut(s)	101, 715, 716
BssMI	GATC	6 cut(s)	105, 277, 328, 341, 358, 875
BssSI	CACGAG	1 cut(s)	575
Bst2BI	CACGAG	1 cut(s)	575
Bst2UI	CCWGG	3 cut(s)	47, 495, 717
Bst6I	CTCTTC	2 cut(s)	197, 841
BstAPI	GCANNNNNTGC	1 cut(s)	305
BstAUI	TGTACA	2 cut(s)	571, 677
BstBAI	YACGTR	1 cut(s)	490
BstC8I	GCNNGC	2 cut(s)	306, 790
BstDEI	CTNAG	6 cut(s)	36, 157, 249, 274, 418, 806
BstFNI	CGCG	3 cut(s)	177, 198, 266
BstH2I	RGCGCY	2 cut(s)	391, 806
BstHHI	GCGC	3 cut(s)	310, 390, 805
BstKTI	GATC	6 cut(s)	108, 280, 331, 344, 361, 878
BstMAI	GTCTC	3 cut(s)	158, 252, 572
BstMBI	GATC	6 cut(s)	105, 277, 328, 341, 358, 875
BstMWI	GCNNNNNNNGC	4 cut(s)	296, 305, 761, 898
BstNI	CCWGG	3 cut(s)	47, 495, 717
BstNSI	RCATGY	3 cut(s)	308, 678, 750
BstSCI	CCNGG	4 cut(s)	45, 205, 493, 715
BstSFI	CTRYAG	1 cut(s)	468
BstSLI	GKGCMC	1 cut(s)	716
BstUI	CGCG	3 cut(s)	177, 198, 266
BstV1I	GCAGC	2 cut(s)	492, 564
BstX2I	RGATCY	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	105
BsuI	GTATCC	1 cut(s)	775
BsuRI	GGCC	1 cut(s)	670
BveI	ACCTGC	1 cut(s)	461
Cac8I	GCNNGC	2 cut(s)	306, 790
CfoI	GCGC	3 cut(s)	310, 390, 805
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	668
CsiI	ACCWGGT	1 cut(s)	45
Csp6I	GTAC	2 cut(s)	572, 678
CviAII	CATG	8 cut(s)	305, 520, 548, 595, 639, 675, 747, 856
CviQI	GTAC	2 cut(s)	572, 678
DdeI	CTNAG	6 cut(s)	36, 157, 249, 274, 418, 806
DpnI	GATC	6 cut(s)	107, 279, 330, 343, 360, 877
DpnII	GATC	6 cut(s)	105, 277, 328, 341, 358, 875
Eam1104I	CTCTTC	2 cut(s)	197, 841
EarI	CTCTTC	2 cut(s)	197, 841
Ecl136II	GAGCTC	2 cut(s)	130, 755
Eco24I	GRGCYC	2 cut(s)	132, 757
Eco31I	GGTCTC	1 cut(s)	158
Eco47III	AGCGCT	2 cut(s)	389, 804
Eco53kI	GAGCTC	2 cut(s)	130, 755
Eco57I	CTGAAG	1 cut(s)	591
Eco72I	CACGTG	1 cut(s)	490
EcoICRI	GAGCTC	2 cut(s)	130, 755
EcoRII	CCWGG	3 cut(s)	45, 493, 715
EcoT22I	ATGCAT	1 cut(s)	306
EcoT38I	GRGCYC	2 cut(s)	132, 757
FaeI	CATG	8 cut(s)	308, 523, 551, 598, 642, 678, 750, 859
FatI	CATG	8 cut(s)	304, 519, 547, 594, 638, 674, 746, 855
FauI	CCCGC	2 cut(s)	33, 182
Fnu4HI	GCNGC	3 cut(s)	15, 481, 553
FriOI	GRGCYC	2 cut(s)	132, 757
Fsp4HI	GCNGC	3 cut(s)	15, 481, 553
FspBI	CTAG	5 cut(s)	362, 378, 414, 432, 450
GlaI	GCGC	3 cut(s)	309, 389, 804
GluI	GCNGC	3 cut(s)	15, 481, 553
GsuI	CTGGAG	2 cut(s)	741, 819
HaeII	RGCGCY	2 cut(s)	391, 806
HaeIII	GGCC	1 cut(s)	670
HapII	CCGG	3 cut(s)	150, 206, 240
HhaI	GCGC	3 cut(s)	310, 390, 805
Hin1II	CATG	8 cut(s)	308, 523, 551, 598, 642, 678, 750, 859
Hin6I	GCGC	3 cut(s)	308, 388, 803
HinP1I	GCGC	3 cut(s)	308, 388, 803
HinfI	GANTC	3 cut(s)	215, 464, 808
HpaII	CCGG	3 cut(s)	150, 206, 240
Hpy166II	GTNNAC	1 cut(s)	574
Hpy188I	TCNGA	5 cut(s)	105, 134, 160, 230, 421
Hpy188III	TCNNGA	5 cut(s)	332, 393, 461, 779, 879
Hpy8I	GTNNAC	1 cut(s)	574
Hpy99I	CGWCG	2 cut(s)	128, 149
HpyAV	CCTTC	2 cut(s)	331, 845
HpyCH4IV	ACGT	2 cut(s)	93, 489
HpyCH4V	TGCA	5 cut(s)	304, 470, 539, 739, 817
HpyF10VI	GCNNNNNNNGC	4 cut(s)	296, 305, 761, 898
HpyF3I	CTNAG	6 cut(s)	36, 157, 249, 274, 418, 806
HpySE526I	ACGT	2 cut(s)	93, 489
Hsp92II	CATG	8 cut(s)	308, 523, 551, 598, 642, 678, 750, 859
HspAI	GCGC	3 cut(s)	308, 388, 803
Kzo9I	GATC	6 cut(s)	105, 277, 328, 341, 358, 875
LmnI	GCTCC	5 cut(s)	135, 296, 752, 760, 800
Lsp1109I	GCAGC	2 cut(s)	492, 564
LweI	GCATC	1 cut(s)	726
MabI	ACCWGGT	1 cut(s)	45
MaeI	CTAG	5 cut(s)	362, 378, 414, 432, 450
MaeII	ACGT	2 cut(s)	93, 489
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	6 cut(s)	107, 279, 330, 343, 360, 877
MboI	GATC	6 cut(s)	105, 277, 328, 341, 358, 875
MboII	GAAGA	5 cut(s)	173, 184, 597, 745, 828
MflI	RGATCY	1 cut(s)	105
MhlI	GDGCHC	3 cut(s)	132, 716, 757
MluCI	AATT	5 cut(s)	373, 505, 601, 693, 728
MlyI	GAGTC	2 cut(s)	224, 817
MmeI	TCCRAC	1 cut(s)	668
MnlI	CCTC	7 cut(s)	45, 75, 111, 127, 200, 229, 236
Mph1103I	ATGCAT	1 cut(s)	306
MslI	CAYNNNNRTG	1 cut(s)	488
MspI	CCGG	3 cut(s)	150, 206, 240
MspR9I	CCNGG	4 cut(s)	47, 207, 495, 717
Mva1269I	GAATGC	2 cut(s)	483, 894
MvaI	CCWGG	3 cut(s)	47, 495, 717
MvnI	CGCG	3 cut(s)	177, 198, 266
MwoI	GCNNNNNNNGC	4 cut(s)	296, 305, 761, 898
NciI	CCSGG	1 cut(s)	207
NdeII	GATC	6 cut(s)	105, 277, 328, 341, 358, 875
NlaIII	CATG	8 cut(s)	308, 523, 551, 598, 642, 678, 750, 859
NlaIV	GGNNCC	3 cut(s)	107, 669, 713
NsiI	ATGCAT	1 cut(s)	306
NspI	RCATGY	3 cut(s)	308, 678, 750
PaeI	GCATGC	1 cut(s)	308
PaqCI	CACCTGC	1 cut(s)	461
PasI	CCCWGGG	1 cut(s)	716
PciI	ACATGT	2 cut(s)	674, 746
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PctI	GAATGC	2 cut(s)	483, 894
PfeI	GAWTC	1 cut(s)	464
PflMI	CCANNNNNTGG	1 cut(s)	548
PkrI	GCNGC	3 cut(s)	16, 482, 554
PleI	GAGTC	2 cut(s)	223, 816
PmaCI	CACGTG	1 cut(s)	490
PmlI	CACGTG	1 cut(s)	490
PpsI	GAGTC	2 cut(s)	223, 816
Ppu21I	YACGTR	1 cut(s)	490
PscI	ACATGT	2 cut(s)	674, 746
Psp124BI	GAGCTC	2 cut(s)	132, 757
Psp6I	CCWGG	3 cut(s)	45, 493, 715
PspCI	CACGTG	1 cut(s)	490
PspGI	CCWGG	3 cut(s)	45, 493, 715
PspN4I	GGNNCC	3 cut(s)	107, 669, 713
PspPI	GGNCC	1 cut(s)	668
PstI	CTGCAG	1 cut(s)	472
PsuI	RGATCY	1 cut(s)	105
RsaI	GTAC	2 cut(s)	573, 679
RsaNI	GTAC	2 cut(s)	572, 678
RseI	CAYNNNNRTG	1 cut(s)	488
SacI	GAGCTC	2 cut(s)	132, 757
SatI	GCNGC	3 cut(s)	15, 481, 553
Sau3AI	GATC	6 cut(s)	105, 277, 328, 341, 358, 875
Sau96I	GGNCC	1 cut(s)	668
SchI	GAGTC	2 cut(s)	224, 817
ScrFI	CCNGG	4 cut(s)	47, 207, 495, 717
SduI	GDGCHC	3 cut(s)	132, 716, 757
SexAI	ACCWGGT	1 cut(s)	45
SfaNI	GCATC	1 cut(s)	726
SfcI	CTRYAG	1 cut(s)	468
SmiMI	CAYNNNNRTG	1 cut(s)	488
SmlI	CTYRAG	2 cut(s)	332, 391
SmoI	CTYRAG	2 cut(s)	332, 391
SphI	GCATGC	1 cut(s)	308
Sse9I	AATT	5 cut(s)	373, 505, 601, 693, 728
SsiI	CCGC	5 cut(s)	26, 32, 175, 196, 266
SspMI	CTAG	5 cut(s)	362, 378, 414, 432, 450
SstI	GAGCTC	2 cut(s)	132, 757
StyD4I	CCNGG	4 cut(s)	45, 205, 493, 715
TaiI	ACGT	2 cut(s)	96, 492
TasI	AATT	5 cut(s)	373, 505, 601, 693, 728
TatI	WGTACW	2 cut(s)	571, 677
TfiI	GAWTC	1 cut(s)	464
TseI	GCWGC	3 cut(s)	14, 480, 552
TspDTI	ATGAA	3 cut(s)	420, 611, 712
Van91I	CCANNNNNTGG	1 cut(s)	548
XceI	RCATGY	3 cut(s)	308, 678, 750
XcmI	CCANNNNNNNNNTGG	1 cut(s)	880
XspI	CTAG	5 cut(s)	362, 378, 414, 432, 450
Zsp2I	ATGCAT	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.