Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0007111

Physical Location & Seq

Genomic Coordinates Reverse (-)

15559246 .. 15562674

Gene Structure 3429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1176300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGACGACATGGCTCCCTATTACCCGCCACCGCCTCCACCACCAGGCTCGGTTCACTACCCCTACTACCAACAACCTCCGCCCTCTCAGCCACCTCCTGTGGTTGTGCCACCGCCACAGCACCACTTGGTTCAGCCCTACTTCCCTCAACAGCCACCACCTTTCGCTTCCTACTCTGCCCCTCTTATCCCCCAACCCTCATACGACGAGCTCCGAACTCTATTCGTCGCCGGTCTCCCAGAAGATGTCGAGCCTCGCGAAATCTATAACCTCTTCCGCGAGTTTCCGGGTTACGAGTCCTCCCACCTCCGAACCCCCAACGGAAAATCTCAGCCTTTTGCTTTTGCGGTGTTCTTGGATCAGCAGTCTGCCATTGGAGCAATGCACGCGCTGAATGGGATGGTGTTTGATCTTGAGAAAGGTTCAACATTATATATTGATCTAGCAAAATCTAATTCTAGGTCGAAGCGCTCAAGAACAGATGATGAAAGATCTGGCTCAGATAAGAGAGCTAGAAGTTCGTCATATTCAAGGGGAACTCCTGATTCTGGAGTTGGCAGCATTCACATGCCTGGAATGGGTAATTCCGCTTACAACATGACTGGTTATCCATCTGCACCAAGTCATGGCAACTTCAATGGCAGAGCTGTACACGAGACAATATCCCCAAATGCGCATTTTCCACAAAATAATACTCCATGTCCAACACTTTTTGTGGCTAACTTGGGGCCAACATGTACGGAGCAAGAGTTAATTCAAGTGTTTTCAAGGTGCCCTGGGTTCATAAAATTGAAGATGCAAAGCACATATGGAGCTCCGGTTGCATTTGTTGATTTTCAGGACACTGCCTGCTCAACTGGAGCGCTGAGCCATCTGCAAGGCACATTTCTCTACTCGTCAACAGCTGGCGAAGGCATGAGATTAGAATACGCCAGATCACGAATGGGAATGCGTAAGAAGCCGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035239 GO:0035295 GO:0042127 GO:0042802 GO:0042803 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046983 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048660 GO:0048661 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051147 GO:0051148 GO:0051150 GO:0051151 GO:0051171 GO:0051252 GO:0055123 GO:0060255 GO:0065007 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

323

Amino Acids

35.44

Weight (kDa)

7.72

Isoelectric Point (pI)

65.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	74 - 137	3.3e-11	RNA recognition motif
RRM_1	PF00076	237 - 300	9.6e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42240 AT2G42240 AT2G42240
fragaria_vesca	FvH4_1g16380 FvH4_1g16380
malus_domestica	MD02G1176300.v1.1 MD15G1286700.v1.1
prunus_persica	Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1
pyrus_communis	pycom02g14250 pycom15g25000
rosa_chinensis	RchiOBHm_Chr2g0106251
rosa_laevigata	RLG00000017483
rosa_multiflora	Rmu_sc0008603.1_g000013
rosa_roxburghii	Rroxscaffold_2G00137330
rosa_rugosa	Rorug02G0133700 Rorug02G0133800
rosa_samantha	Rh2AG184900 Rh2BG195200 Rh2CG190000 Rh2DG191100
rosa_wichuraiana	Rw2G014440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	675
AccB1I	GGYRCC	1 cut(s)	771
AccB7I	CCANNNNNTGG	1 cut(s)	626
AccII	CGCG	3 cut(s)	258, 279, 389
AciI	CCGC	7 cut(s)	26, 32, 80, 113, 277, 347, 588
AclWI	GGATC	1 cut(s)	366
AfaI	GTAC	2 cut(s)	651, 739
AfeI	AGCGCT	2 cut(s)	470, 864
AfiI	CCNNNNNNNGG	4 cut(s)	44, 548, 578, 626
AflIII	ACRYGT	1 cut(s)	734
AgsI	TTSAA	6 cut(s)	426, 531, 637, 758, 768, 793
AjnI	CCWGG	3 cut(s)	43, 571, 775
AluBI	AGCT	5 cut(s)	211, 512, 647, 815, 905
AluI	AGCT	5 cut(s)	211, 512, 647, 815, 905
Alw21I	GWGCWC	2 cut(s)	213, 817
Alw26I	GTCTC	2 cut(s)	239, 650
AlwI	GGATC	1 cut(s)	366
Aor51HI	AGCGCT	2 cut(s)	470, 864
AoxI	GGCC	1 cut(s)	728
ApeKI	GCWGC	1 cut(s)	558
AspLEI	GCGC	4 cut(s)	391, 471, 676, 865
AspS9I	GGNCC	1 cut(s)	728
AsuC2I	CCSGG	1 cut(s)	288
BaeGI	GKGCMC	1 cut(s)	776
BanI	GGYRCC	1 cut(s)	771
BanII	GRGCYC	2 cut(s)	213, 817
BauI	CACGAG	1 cut(s)	653
Bbv12I	GWGCWC	2 cut(s)	213, 817
BbvI	GCAGC	1 cut(s)	570
BccI	CCATC	3 cut(s)	394, 619, 879
BciT130I	CCWGG	3 cut(s)	45, 573, 777
BcnI	CCSGG	1 cut(s)	288
BcoDI	GTCTC	2 cut(s)	239, 650
BfaI	CTAG	3 cut(s)	443, 459, 513
BfoI	RGCGCY	2 cut(s)	472, 866
BglII	AGATCT	1 cut(s)	491
BisI	GCNGC	1 cut(s)	559
BlpI	GCTNAGC	1 cut(s)	866
BlsI	GCNGC	1 cut(s)	560
Bme1390I	CCNGG	4 cut(s)	45, 288, 573, 777
BmgT120I	GGNCC	1 cut(s)	728
BmiI	GGNNCC	3 cut(s)	15, 729, 773
BmrFI	CCNGG	4 cut(s)	45, 288, 573, 777
BmsI	GCATC	1 cut(s)	786
BpmI	CTGGAG	2 cut(s)	570, 879
Bpu1102I	GCTNAGC	1 cut(s)	866
BpuEI	CTTGAG	2 cut(s)	434, 457
BpuMI	CCSGG	1 cut(s)	288
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	775, 776
BsaWI	WCCGGW	1 cut(s)	817
BsaXI	ACNNNNNCTCC	6 cut(s)	284, 314, 734, 764, 804, 834
Bsc4I	CCNNNNNNNGG	4 cut(s)	44, 548, 578, 626
Bse118I	RCCGGY	1 cut(s)	230
Bse1I	ACTGG	2 cut(s)	607, 862
Bse3DI	GCAATG	1 cut(s)	387
BseBI	CCWGG	3 cut(s)	45, 573, 777
BseDI	CCNNGG	2 cut(s)	775, 776
BseGI	GGATG	1 cut(s)	405
BseLI	CCNNNNNNNGG	4 cut(s)	44, 548, 578, 626
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	4 cut(s)	101, 344, 513, 857
BseNI	ACTGG	2 cut(s)	607, 862
BseSI	GKGCMC	1 cut(s)	776
BseXI	GCAGC	1 cut(s)	570
BsgI	GTGCAG	1 cut(s)	600
Bsh1236I	CGCG	3 cut(s)	258, 279, 389
BshFI	GGCC	1 cut(s)	730
BshNI	GGYRCC	1 cut(s)	771
BsiHKAI	GWGCWC	2 cut(s)	213, 817
BsiSI	CCGG	3 cut(s)	231, 287, 818
BslI	CCNNNNNNNGG	4 cut(s)	44, 548, 578, 626
BsmAI	GTCTC	2 cut(s)	239, 650
BsmI	GAATGC	2 cut(s)	561, 954
BsnI	GGCC	1 cut(s)	730
Bso31I	GGTCTC	1 cut(s)	239
Bsp1286I	GDGCHC	3 cut(s)	213, 776, 817
Bsp1407I	TGTACA	1 cut(s)	649
Bsp143I	GATC	5 cut(s)	358, 409, 439, 491, 935
Bsp1720I	GCTNAGC	1 cut(s)	866
Bsp68I	TCGCGA	1 cut(s)	258
BspACI	CCGC	7 cut(s)	26, 32, 80, 113, 277, 347, 588
BspANI	GGCC	1 cut(s)	730
BspCNI	CTCAG	4 cut(s)	100, 343, 512, 858
BspFNI	CGCG	3 cut(s)	258, 279, 389
BspLI	GGNNCC	3 cut(s)	15, 729, 773
BspPI	GGATC	1 cut(s)	366
BspT107I	GGYRCC	1 cut(s)	771
BspTNI	GGTCTC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	387
BsrFI	RCCGGY	1 cut(s)	230
BsrGI	TGTACA	1 cut(s)	649
BsrI	ACTGG	2 cut(s)	607, 862
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	2 cut(s)	775, 776
BssMI	GATC	5 cut(s)	358, 409, 439, 491, 935
BssSI	CACGAG	1 cut(s)	653
Bst2BI	CACGAG	1 cut(s)	653
Bst2UI	CCWGG	3 cut(s)	45, 573, 777
Bst6I	CTCTTC	1 cut(s)	278
BstAUI	TGTACA	1 cut(s)	649
BstC8I	GCNNGC	3 cut(s)	387, 850, 907
BstDEI	CTNAG	4 cut(s)	87, 330, 499, 866
BstF5I	GGATG	1 cut(s)	405
BstFNI	CGCG	3 cut(s)	258, 279, 389
BstH2I	RGCGCY	2 cut(s)	472, 866
BstHHI	GCGC	4 cut(s)	391, 471, 676, 865
BstKTI	GATC	5 cut(s)	361, 412, 442, 494, 938
BstMAI	GTCTC	2 cut(s)	239, 650
BstMBI	GATC	5 cut(s)	358, 409, 439, 491, 935
BstMWI	GCNNNNNNNGC	5 cut(s)	88, 377, 386, 821, 958
BstNI	CCWGG	3 cut(s)	45, 573, 777
BstNSI	RCATGY	2 cut(s)	571, 738
BstSCI	CCNGG	4 cut(s)	43, 286, 571, 775
BstSLI	GKGCMC	1 cut(s)	776
BstUI	CGCG	3 cut(s)	258, 279, 389
BstV1I	GCAGC	1 cut(s)	570
BstX2I	RGATCY	1 cut(s)	491
BstYI	RGATCY	1 cut(s)	491
BsuRI	GGCC	1 cut(s)	730
BtsCI	GGATG	1 cut(s)	405
BtsI	GCAGTG	1 cut(s)	843
BtsIMutI	CAGTG	1 cut(s)	843
BtuMI	TCGCGA	1 cut(s)	258
Cac8I	GCNNGC	3 cut(s)	387, 850, 907
CfoI	GCGC	4 cut(s)	391, 471, 676, 865
Cfr10I	RCCGGY	1 cut(s)	230
Cfr13I	GGNCC	1 cut(s)	728
Csp6I	GTAC	2 cut(s)	650, 738
CviAII	CATG	7 cut(s)	10, 568, 598, 626, 699, 735, 916
CviQI	GTAC	2 cut(s)	650, 738
DdeI	CTNAG	4 cut(s)	87, 330, 499, 866
DpnI	GATC	5 cut(s)	360, 411, 441, 493, 937
DpnII	GATC	5 cut(s)	358, 409, 439, 491, 935
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
EciI	GGCGGA	1 cut(s)	69
Ecl136II	GAGCTC	2 cut(s)	211, 815
Eco24I	GRGCYC	2 cut(s)	213, 817
Eco31I	GGTCTC	1 cut(s)	239
Eco47III	AGCGCT	2 cut(s)	470, 864
Eco53kI	GAGCTC	2 cut(s)	211, 815
EcoICRI	GAGCTC	2 cut(s)	211, 815
EcoRII	CCWGG	3 cut(s)	43, 571, 775
EcoT38I	GRGCYC	2 cut(s)	213, 817
FaeI	CATG	7 cut(s)	13, 571, 601, 629, 702, 738, 919
FatI	CATG	7 cut(s)	9, 567, 597, 625, 698, 734, 915
FauI	CCCGC	1 cut(s)	33
FauNDI	CATATG	1 cut(s)	808
Fnu4HI	GCNGC	1 cut(s)	559
FokI	GGATG	1 cut(s)	412
FriOI	GRGCYC	2 cut(s)	213, 817
Fsp4HI	GCNGC	1 cut(s)	559
FspAI	RTGCGCAY	1 cut(s)	675
FspBI	CTAG	3 cut(s)	443, 459, 513
FspI	TGCGCA	1 cut(s)	675
GlaI	GCGC	4 cut(s)	390, 470, 675, 864
GluI	GCNGC	1 cut(s)	559
GsuI	CTGGAG	2 cut(s)	570, 879
HaeII	RGCGCY	2 cut(s)	472, 866
HaeIII	GGCC	1 cut(s)	730
HapII	CCGG	3 cut(s)	231, 287, 818
HhaI	GCGC	4 cut(s)	391, 471, 676, 865
Hin1II	CATG	7 cut(s)	13, 571, 601, 629, 702, 738, 919
Hin6I	GCGC	4 cut(s)	389, 469, 674, 863
HinP1I	GCGC	4 cut(s)	389, 469, 674, 863
HincII	GTYRAC	1 cut(s)	900
HindII	GTYRAC	1 cut(s)	900
HinfI	GANTC	2 cut(s)	296, 545
HpaII	CCGG	3 cut(s)	231, 287, 818
Hpy166II	GTNNAC	3 cut(s)	55, 652, 900
Hpy188I	TCNGA	3 cut(s)	215, 311, 502
Hpy188III	TCNNGA	7 cut(s)	257, 413, 474, 542, 549, 839, 939
Hpy8I	GTNNAC	3 cut(s)	55, 652, 900
Hpy99I	CGWCG	2 cut(s)	209, 230
HpyAV	CCTTC	1 cut(s)	905
HpyCH4V	TGCA	5 cut(s)	385, 617, 799, 824, 877
HpyF10VI	GCNNNNNNNGC	5 cut(s)	88, 377, 386, 821, 958
HpyF3I	CTNAG	4 cut(s)	87, 330, 499, 866
Hsp92II	CATG	7 cut(s)	13, 571, 601, 629, 702, 738, 919
HspAI	GCGC	4 cut(s)	389, 469, 674, 863
Kzo9I	GATC	5 cut(s)	358, 409, 439, 491, 935
LmnI	GCTCC	7 cut(s)	19, 216, 377, 742, 812, 820, 860
Lsp1109I	GCAGC	1 cut(s)	570
LweI	GCATC	1 cut(s)	786
MaeI	CTAG	3 cut(s)	443, 459, 513
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	5 cut(s)	360, 411, 441, 493, 937
MboI	GATC	5 cut(s)	358, 409, 439, 491, 935
MboII	GAAGA	3 cut(s)	254, 265, 805
MflI	RGATCY	1 cut(s)	491
MhlI	GDGCHC	3 cut(s)	213, 776, 817
MluCI	AATT	4 cut(s)	454, 583, 753, 788
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	1 cut(s)	728
MseI	TTAA	1 cut(s)	752
MslI	CAYNNNNRTG	1 cut(s)	566
MspA1I	CMGCKG	1 cut(s)	905
MspI	CCGG	3 cut(s)	231, 287, 818
MspR9I	CCNGG	4 cut(s)	45, 288, 573, 777
Mva1269I	GAATGC	2 cut(s)	561, 954
MvaI	CCWGG	3 cut(s)	45, 573, 777
MvnI	CGCG	3 cut(s)	258, 279, 389
MwoI	GCNNNNNNNGC	5 cut(s)	88, 377, 386, 821, 958
NciI	CCSGG	1 cut(s)	288
NdeI	CATATG	1 cut(s)	808
NdeII	GATC	5 cut(s)	358, 409, 439, 491, 935
NlaIII	CATG	7 cut(s)	13, 571, 601, 629, 702, 738, 919
NlaIV	GGNNCC	3 cut(s)	15, 729, 773
NruI	TCGCGA	1 cut(s)	258
NsbI	TGCGCA	1 cut(s)	675
NspI	RCATGY	2 cut(s)	571, 738
PasI	CCCWGGG	1 cut(s)	776
PciI	ACATGT	1 cut(s)	734
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PctI	GAATGC	2 cut(s)	561, 954
PfeI	GAWTC	1 cut(s)	545
PflMI	CCANNNNNTGG	1 cut(s)	626
PkrI	GCNGC	1 cut(s)	560
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
PscI	ACATGT	1 cut(s)	734
Psp124BI	GAGCTC	2 cut(s)	213, 817
Psp6I	CCWGG	3 cut(s)	43, 571, 775
PspGI	CCWGG	3 cut(s)	43, 571, 775
PspN4I	GGNNCC	3 cut(s)	15, 729, 773
PspPI	GGNCC	1 cut(s)	728
PsuI	RGATCY	1 cut(s)	491
PvuII	CAGCTG	1 cut(s)	905
RruI	TCGCGA	1 cut(s)	258
RsaI	GTAC	2 cut(s)	651, 739
RsaNI	GTAC	2 cut(s)	650, 738
RseI	CAYNNNNRTG	1 cut(s)	566
SacI	GAGCTC	2 cut(s)	213, 817
SaqAI	TTAA	1 cut(s)	752
SatI	GCNGC	1 cut(s)	559
Sau3AI	GATC	5 cut(s)	358, 409, 439, 491, 935
Sau96I	GGNCC	1 cut(s)	728
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	4 cut(s)	45, 288, 573, 777
SduI	GDGCHC	3 cut(s)	213, 776, 817
SfaNI	GCATC	1 cut(s)	786
SmiMI	CAYNNNNRTG	1 cut(s)	566
SmlI	CTYRAG	2 cut(s)	413, 472
SmoI	CTYRAG	2 cut(s)	413, 472
Sse9I	AATT	4 cut(s)	454, 583, 753, 788
SsiI	CCGC	7 cut(s)	26, 32, 80, 113, 277, 347, 588
SspMI	CTAG	3 cut(s)	443, 459, 513
SstI	GAGCTC	2 cut(s)	213, 817
StyD4I	CCNGG	4 cut(s)	43, 286, 571, 775
TaqI	TCGA	2 cut(s)	249, 464
TasI	AATT	4 cut(s)	454, 583, 753, 788
TatI	WGTACW	1 cut(s)	649
TfiI	GAWTC	1 cut(s)	545
Tru1I	TTAA	1 cut(s)	752
Tru9I	TTAA	1 cut(s)	752
TscAI	CASTG	1 cut(s)	850
TseI	GCWGC	1 cut(s)	558
TspDTI	ATGAA	2 cut(s)	501, 772
TspGWI	ACGGA	2 cut(s)	336, 755
TspRI	CASTG	1 cut(s)	850
Van91I	CCANNNNNTGG	1 cut(s)	626
XceI	RCATGY	2 cut(s)	571, 738
XcmI	CCANNNNNNNNNTGG	1 cut(s)	940
XspI	CTAG	3 cut(s)	443, 459, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.