Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007111

Physical Location & Seq

Genomic Coordinates Reverse (-)

17961188 .. 17964678

Gene Structure 3491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG190000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGACGAGATGGCCGCCTATTACCCTCCACCGCCTCCGCCACCAGGCTCCGTCCACTATCCATACTACCACCACCAGCCACCTCAACCGCCTGCCCCCGTGGCCCCTCCGCCGCCGCCGCCGCAGCACCACCACCACCACTTGGTTCATCAGCCCTACTACCCTCCCCAGCCTCAGCCTTACGCTCCCTACGCGCCGCCACTCGTCGCCCAGGCCGCCTACGACGAGGTCCGGACCCTCTTCGTGGCCGGCCTACCCGAAGATGTCAAGCCCCGTGAAATCTACAACCTCTTCCGCGAGTTTCCCGGTTACGAGTCCTCTCACCTCCGAACCCCCACCGAGAAAACTCAGCCTTTTGCGTTTGCGGTGTTCTTGGACCAGCAATCTGCGATCGGAGCAATGCAAGCACTGAATGGGATGGTATTTGATCTTGAGAAGGGGTCGACATTATATATAGATCTAGCAAAATCTAATTCTAGGTCCAAGCGCTCAAGAACAGACGATGAAAGATCTGGCTCGGATAAGAAAGCTAGAGGTTCATCATATTCAAGGGCCACTTCTGATCCTGGTGTTGGCAGCATTCACATGCCTGGAATGGGTAATTCTGCTTACAACATGATTGGTTATCCATCTGCACCAAGTCATGGCAGCTTCAGTGGCAGTGGTGTAAATGAGCCAATAGCCTCAAACATGGTATGGTTGCTTCCATTTGTAAAACTCCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035239 GO:0035295 GO:0042127 GO:0042802 GO:0042803 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046983 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048660 GO:0048661 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051147 GO:0051148 GO:0051150 GO:0051151 GO:0051171 GO:0051252 GO:0055123 GO:0060255 GO:0065007 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

241

Amino Acids

26.54

Weight (kDa)

6.63

Isoelectric Point (pI)

66.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	80 - 143	7.6e-12	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42240 AT2G42240 AT2G42240
fragaria_vesca	FvH4_1g16380 FvH4_1g16380
malus_domestica	MD02G1176300.v1.1 MD15G1286700.v1.1
prunus_persica	Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1
pyrus_communis	pycom02g14250 pycom15g25000
rosa_chinensis	RchiOBHm_Chr2g0106251
rosa_laevigata	RLG00000017483
rosa_multiflora	Rmu_sc0008603.1_g000013
rosa_roxburghii	Rroxscaffold_2G00137330
rosa_rugosa	Rorug02G0133700 Rorug02G0133800
rosa_samantha	Rh2AG184900 Rh2BG195200 Rh2CG190000 Rh2DG191100
rosa_wichuraiana	Rw2G014440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	142, 644
AccI	GTMKAC	1 cut(s)	443
AccII	CGCG	2 cut(s)	194, 297
AccIII	TCCGGA	1 cut(s)	231
AclWI	GGATC	1 cut(s)	557
AcoI	YGGCCR	2 cut(s)	12, 246
AcuI	CTGAAG	1 cut(s)	637
AfeI	AGCGCT	1 cut(s)	488
AfiI	CCNNNNNNNGG	6 cut(s)	44, 142, 244, 572, 596, 644
AgsI	TTSAA	1 cut(s)	549
AjnI	CCWGG	4 cut(s)	43, 210, 565, 589
AluBI	AGCT	2 cut(s)	530, 651
AluI	AGCT	2 cut(s)	530, 651
AlwI	GGATC	1 cut(s)	557
Aor13HI	TCCGGA	1 cut(s)	231
Aor51HI	AGCGCT	1 cut(s)	488
AoxI	GGCC	6 cut(s)	12, 102, 213, 246, 250, 552
ApeKI	GCWGC	3 cut(s)	124, 576, 648
AspLEI	GCGC	2 cut(s)	196, 489
AspS9I	GGNCC	6 cut(s)	103, 229, 234, 376, 480, 552
AsuC2I	CCSGG	1 cut(s)	306
AsuHPI	GGTGA	1 cut(s)	314
AvaII	GGWCC	4 cut(s)	229, 234, 376, 480
BarI	GAAGNNNNNNTAC	2 cut(s)	687, 719
BbvCI	CCTCAGC	1 cut(s)	174
BbvI	GCAGC	3 cut(s)	136, 588, 660
BccI	CCATC	3 cut(s)	4, 412, 637
BciT130I	CCWGG	4 cut(s)	45, 212, 567, 591
BcnI	CCSGG	1 cut(s)	306
BfaI	CTAG	3 cut(s)	461, 477, 531
BfoI	RGCGCY	1 cut(s)	490
BglI	GCCNNNNNGGC	1 cut(s)	101
BglII	AGATCT	2 cut(s)	457, 509
Bme1390I	CCNGG	5 cut(s)	45, 212, 306, 567, 591
Bme18I	GGWCC	4 cut(s)	229, 234, 376, 480
BmgT120I	GGNCC	6 cut(s)	103, 229, 234, 376, 480, 552
BmiI	GGNNCC	3 cut(s)	49, 105, 236
BmrFI	CCNGG	5 cut(s)	45, 212, 306, 567, 591
Bpu10I	CCTNAGC	1 cut(s)	174
BpuEI	CTTGAG	2 cut(s)	452, 475
BpuMI	CCSGG	1 cut(s)	306
BsaJI	CCNNGG	2 cut(s)	99, 210
BsaWI	WCCGGW	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	6 cut(s)	44, 142, 244, 572, 596, 644
Bse118I	RCCGGY	1 cut(s)	248
Bse3DI	GCAATG	1 cut(s)	405
BseAI	TCCGGA	1 cut(s)	231
BseBI	CCWGG	4 cut(s)	45, 212, 567, 591
BseDI	CCNNGG	2 cut(s)	99, 210
BseGI	GGATG	1 cut(s)	423
BseLI	CCNNNNNNNGG	6 cut(s)	44, 142, 244, 572, 596, 644
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	2 cut(s)	188, 362
BseXI	GCAGC	3 cut(s)	136, 588, 660
BseYI	CCCAGC	1 cut(s)	168
BsgI	GTGCAG	1 cut(s)	618
Bsh1236I	CGCG	2 cut(s)	194, 297
Bsh1285I	CGRYCG	1 cut(s)	393
BshFI	GGCC	6 cut(s)	14, 104, 215, 248, 252, 554
BsiEI	CGRYCG	1 cut(s)	393
BsiSI	CCGG	3 cut(s)	232, 249, 306
BslI	CCNNNNNNNGG	6 cut(s)	44, 142, 244, 572, 596, 644
BsmI	GAATGC	1 cut(s)	579
BsnI	GGCC	6 cut(s)	14, 104, 215, 248, 252, 554
Bsp13I	TCCGGA	1 cut(s)	231
Bsp143I	GATC	5 cut(s)	390, 427, 457, 509, 562
BspANI	GGCC	6 cut(s)	14, 104, 215, 248, 252, 554
BspCNI	CTCAG	2 cut(s)	187, 361
BspEI	TCCGGA	1 cut(s)	231
BspFNI	CGCG	2 cut(s)	194, 297
BspLI	GGNNCC	3 cut(s)	49, 105, 236
BspPI	GGATC	1 cut(s)	557
BsrDI	GCAATG	1 cut(s)	405
BsrFI	RCCGGY	1 cut(s)	248
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	2 cut(s)	99, 210
BssMI	GATC	5 cut(s)	390, 427, 457, 509, 562
Bst2UI	CCWGG	4 cut(s)	45, 212, 567, 591
Bst6I	CTCTTC	2 cut(s)	245, 296
BstC8I	GCNNGC	3 cut(s)	93, 250, 405
BstDEI	CTNAG	2 cut(s)	174, 348
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	423
BstFNI	CGCG	2 cut(s)	194, 297
BstH2I	RGCGCY	1 cut(s)	490
BstHHI	GCGC	2 cut(s)	196, 489
BstKTI	GATC	5 cut(s)	393, 430, 460, 512, 565
BstMBI	GATC	5 cut(s)	390, 427, 457, 509, 562
BstMCI	CGRYCG	1 cut(s)	393
BstMWI	GCNNNNNNNGC	9 cut(s)	101, 118, 121, 124, 191, 215, 395, 404, 657
BstNI	CCWGG	4 cut(s)	45, 212, 567, 591
BstNSI	RCATGY	1 cut(s)	589
BstSCI	CCNGG	5 cut(s)	43, 210, 304, 565, 589
BstUI	CGCG	2 cut(s)	194, 297
BstV1I	GCAGC	3 cut(s)	136, 588, 660
BstX2I	RGATCY	2 cut(s)	457, 509
BstYI	RGATCY	2 cut(s)	457, 509
BsuRI	GGCC	6 cut(s)	14, 104, 215, 248, 252, 554
BtgI	CCRYGG	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	423
BtsI	GCAGTG	1 cut(s)	667
BtsIMutI	CAGTG	3 cut(s)	407, 661, 667
Cac8I	GCNNGC	3 cut(s)	93, 250, 405
CfoI	GCGC	2 cut(s)	196, 489
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	6 cut(s)	103, 229, 234, 376, 480, 552
CviAII	CATG	4 cut(s)	586, 616, 644, 691
DdeI	CTNAG	2 cut(s)	174, 348
DpnI	GATC	5 cut(s)	392, 429, 459, 511, 564
DpnII	GATC	5 cut(s)	390, 427, 457, 509, 562
EaeI	YGGCCR	2 cut(s)	12, 246
Eam1104I	CTCTTC	2 cut(s)	245, 296
EarI	CTCTTC	2 cut(s)	245, 296
EciI	GGCGGA	2 cut(s)	27, 99
Eco47I	GGWCC	4 cut(s)	229, 234, 376, 480
Eco47III	AGCGCT	1 cut(s)	488
Eco57I	CTGAAG	1 cut(s)	637
EcoRII	CCWGG	4 cut(s)	43, 210, 565, 589
FaeI	CATG	4 cut(s)	589, 619, 647, 694
FalI	AAGNNNNNCTT	2 cut(s)	541, 573
FatI	CATG	4 cut(s)	585, 615, 643, 690
FblI	GTMKAC	1 cut(s)	443
FokI	GGATG	1 cut(s)	430
FseI	GGCCGGCC	1 cut(s)	252
FspBI	CTAG	3 cut(s)	461, 477, 531
GlaI	GCGC	2 cut(s)	195, 488
GsaI	CCCAGC	1 cut(s)	172
HaeII	RGCGCY	1 cut(s)	490
HaeIII	GGCC	6 cut(s)	14, 104, 215, 248, 252, 554
HapII	CCGG	3 cut(s)	232, 249, 306
HhaI	GCGC	2 cut(s)	196, 489
Hin1II	CATG	4 cut(s)	589, 619, 647, 694
Hin6I	GCGC	2 cut(s)	194, 487
HinP1I	GCGC	2 cut(s)	194, 487
HincII	GTYRAC	1 cut(s)	444
HindII	GTYRAC	1 cut(s)	444
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	3 cut(s)	232, 249, 306
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	2 cut(s)	55, 444
Hpy188I	TCNGA	4 cut(s)	329, 395, 520, 562
Hpy188III	TCNNGA	3 cut(s)	232, 431, 492
Hpy8I	GTNNAC	2 cut(s)	55, 444
Hpy99I	CGWCG	2 cut(s)	209, 227
HpyAV	CCTTC	1 cut(s)	430
HpyCH4V	TGCA	2 cut(s)	403, 635
HpyF10VI	GCNNNNNNNGC	9 cut(s)	101, 118, 121, 124, 191, 215, 395, 404, 657
HpyF3I	CTNAG	2 cut(s)	174, 348
Hsp92II	CATG	4 cut(s)	589, 619, 647, 694
HspAI	GCGC	2 cut(s)	194, 487
Kpn2I	TCCGGA	1 cut(s)	231
KroI	GCCGGC	1 cut(s)	248
KroNI	GCCGGC	1 cut(s)	250
Kzo9I	GATC	5 cut(s)	390, 427, 457, 509, 562
LmnI	GCTCC	3 cut(s)	53, 190, 395
Lsp1109I	GCAGC	3 cut(s)	136, 588, 660
MaeI	CTAG	3 cut(s)	461, 477, 531
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	5 cut(s)	392, 429, 459, 511, 564
MboI	GATC	5 cut(s)	390, 427, 457, 509, 562
MboII	GAAGA	3 cut(s)	232, 272, 283
MflI	RGATCY	2 cut(s)	457, 509
MluCI	AATT	2 cut(s)	472, 601
MlyI	GAGTC	1 cut(s)	323
MroI	TCCGGA	1 cut(s)	231
MroNI	GCCGGC	1 cut(s)	248
MslI	CAYNNNNRTG	1 cut(s)	584
MspI	CCGG	3 cut(s)	232, 249, 306
MspR9I	CCNGG	5 cut(s)	45, 212, 306, 567, 591
Mva1269I	GAATGC	1 cut(s)	579
MvaI	CCWGG	4 cut(s)	45, 212, 567, 591
MvnI	CGCG	2 cut(s)	194, 297
MwoI	GCNNNNNNNGC	9 cut(s)	101, 118, 121, 124, 191, 215, 395, 404, 657
NaeI	GCCGGC	1 cut(s)	250
NciI	CCSGG	1 cut(s)	306
NdeII	GATC	5 cut(s)	390, 427, 457, 509, 562
NgoMIV	GCCGGC	1 cut(s)	248
NlaIII	CATG	4 cut(s)	589, 619, 647, 694
NlaIV	GGNNCC	3 cut(s)	49, 105, 236
NspI	RCATGY	1 cut(s)	589
PctI	GAATGC	1 cut(s)	579
PdiI	GCCGGC	1 cut(s)	250
PflFI	GACNNNGTC	1 cut(s)	227
PflMI	CCANNNNNTGG	2 cut(s)	142, 644
Ple19I	CGATCG	1 cut(s)	393
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
Psp6I	CCWGG	4 cut(s)	43, 210, 565, 589
PspFI	CCCAGC	1 cut(s)	168
PspGI	CCWGG	4 cut(s)	43, 210, 565, 589
PspN4I	GGNNCC	3 cut(s)	49, 105, 236
PspPI	GGNCC	6 cut(s)	103, 229, 234, 376, 480, 552
PsuI	RGATCY	2 cut(s)	457, 509
PsyI	GACNNNGTC	1 cut(s)	227
PvuI	CGATCG	1 cut(s)	393
RigI	GGCCGGCC	1 cut(s)	252
RseI	CAYNNNNRTG	1 cut(s)	584
SalI	GTCGAC	1 cut(s)	442
Sau3AI	GATC	5 cut(s)	390, 427, 457, 509, 562
Sau96I	GGNCC	6 cut(s)	103, 229, 234, 376, 480, 552
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	5 cut(s)	45, 212, 306, 567, 591
SetI	ASST	8 cut(s)	85, 231, 291, 327, 482, 532, 538, 653
SinI	GGWCC	4 cut(s)	229, 234, 376, 480
SmiMI	CAYNNNNRTG	1 cut(s)	584
SmlI	CTYRAG	2 cut(s)	431, 490
SmoI	CTYRAG	2 cut(s)	431, 490
Sse9I	AATT	2 cut(s)	472, 601
SspMI	CTAG	3 cut(s)	461, 477, 531
StyD4I	CCNGG	5 cut(s)	43, 210, 304, 565, 589
TaqI	TCGA	1 cut(s)	443
TasI	AATT	2 cut(s)	472, 601
TauI	GCSGC	7 cut(s)	17, 115, 118, 121, 124, 199, 218
TscAI	CASTG	3 cut(s)	414, 661, 667
TseI	GCWGC	3 cut(s)	124, 576, 648
TspDTI	ATGAA	3 cut(s)	137, 519, 528
TspGWI	ACGGA	1 cut(s)	40
TspRI	CASTG	3 cut(s)	414, 661, 667
Tth111I	GACNNNGTC	1 cut(s)	227
Van91I	CCANNNNNTGG	2 cut(s)	142, 644
VpaK11BI	GGWCC	4 cut(s)	229, 234, 376, 480
XceI	RCATGY	1 cut(s)	589
XmiI	GTMKAC	1 cut(s)	443
XspI	CTAG	3 cut(s)	461, 477, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.