Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0007111

Physical Location & Seq

Genomic Coordinates Reverse (-)

10852989 .. 10856201

Gene Structure 3213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g14250.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGGCTACAAATTTTCTGGCCCAGCCCACCTTTCCAATTTTTTTCTAGGGCTTCAAATGGACGACATGGCTCCCTATTACCCGCCACCGCCTCCACCACCAGGCTCGGTTCACTACCCCTACTACCAACAACCTCCGCCCTCTCAGCCACCTCCAGTGGTGGCGCCACCGCCACAGCACCACTTGGTTCAGCCCTACTTCCCTCAACAGCCACCACCTTTCGCTTCCTACGCTGCCCCTCTTATCCCCCAACCCTCATACGACGAGCTCCGAACTCTATTCGTCGCCGGTCTCCCAGAAGATGTCAAGCCTCGCGAAATCTATAACCTCTTCCGCGAGTTTCCGGGTTACGAGTCCTCCCACCTCCGAACCCCCAACGGAAAATCTCAGCCTTTTGCTTTTGCGGTGTTCTTGGATCAGCAGTCTGCCATTGGAGCAATGCACGCGCTGAATGGGATGGTGTTTGATCTTGAGAAAGGTTCAACATTATATATTGATCTAGCTAAATCTAATTCTAGGTCTAAGCGTTCAAGAACAGATGATGAAAGATCTGGCTCAGATAAGAGAGCTAGAAGTTCATCATATTCAAGGGGAACTCCTGATTCTGCAGGAGTTGGCAGCATTCACATGCCTGGAATGGGTAATTCTGCTTACAACATGACTGGTTATCCATCTGCACCAAGTCATGGCAACTTCAATGGCAGAGCTGTACACGAGACAATATCCCCAAATGCGAATAATTCTTCTGTACAGCATTTTCCACAAAATAATACTCCATGTCCAACGCTTTTTGTGGCTAACTTGGGGCCAACATGTACGGAGCAAGAGCTAATTCAAGTGTTTTCAAGGTGCCCTGGGTTCATAAAATTGAAGATGCAAAGCACATATGGAGCTCCGGTTGCATTTGTTGATTTTCAGGACACTGCCTGCTCAACTGGAGCGCTGAGTCATCTGCAAGGCACATTTCTCTACTCATCAACAGCTGGCGAAGGCATGAGATTAGAATACGCCAGATCACGAATGGGAATGCGTAAGAAGCCGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035239 GO:0035295 GO:0042127 GO:0042802 GO:0042803 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046983 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048660 GO:0048661 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051147 GO:0051148 GO:0051150 GO:0051151 GO:0051171 GO:0051252 GO:0055123 GO:0060255 GO:0065007 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

349

Amino Acids

38.19

Weight (kDa)

8.75

Isoelectric Point (pI)

62.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42240 AT2G42240 AT2G42240
fragaria_vesca	FvH4_1g16380 FvH4_1g16380
malus_domestica	MD02G1176300.v1.1 MD15G1286700.v1.1
prunus_persica	Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1
pyrus_communis	pycom02g14250 pycom15g25000
rosa_chinensis	RchiOBHm_Chr2g0106251
rosa_laevigata	RLG00000017483
rosa_multiflora	Rmu_sc0008603.1_g000013
rosa_roxburghii	Rroxscaffold_2G00137330
rosa_rugosa	Rorug02G0133700 Rorug02G0133800
rosa_samantha	Rh2AG184900 Rh2BG195200 Rh2CG190000 Rh2DG191100
rosa_wichuraiana	Rw2G014440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	163, 849
AccB7I	CCANNNNNTGG	1 cut(s)	686
AccII	CGCG	3 cut(s)	315, 336, 446
AciI	CCGC	6 cut(s)	83, 89, 137, 170, 334, 404
AclWI	GGATC	1 cut(s)	423
AcsI	RAATTY	1 cut(s)	11
AcyI	GRCGYC	1 cut(s)	164
AfaI	GTAC	3 cut(s)	711, 750, 817
AfeI	AGCGCT	1 cut(s)	942
AfiI	CCNNNNNNNGG	3 cut(s)	101, 638, 686
AflIII	ACRYGT	1 cut(s)	812
AgsI	TTSAA	8 cut(s)	56, 483, 531, 588, 697, 836, 846, 871
AjnI	CCWGG	3 cut(s)	100, 631, 853
AluBI	AGCT	7 cut(s)	268, 503, 569, 707, 829, 893, 983
AluI	AGCT	7 cut(s)	268, 503, 569, 707, 829, 893, 983
Alw21I	GWGCWC	2 cut(s)	270, 895
Alw26I	GTCTC	2 cut(s)	296, 710
AlwI	GGATC	1 cut(s)	423
Aor51HI	AGCGCT	1 cut(s)	942
AoxI	GGCC	2 cut(s)	19, 806
ApeKI	GCWGC	2 cut(s)	233, 618
ApoI	RAATTY	1 cut(s)	11
AspLEI	GCGC	3 cut(s)	166, 448, 943
AspS9I	GGNCC	2 cut(s)	20, 806
AsuC2I	CCSGG	1 cut(s)	345
BaeGI	GKGCMC	1 cut(s)	854
BanI	GGYRCC	2 cut(s)	163, 849
BanII	GRGCYC	2 cut(s)	270, 895
BauI	CACGAG	1 cut(s)	713
Bbv12I	GWGCWC	2 cut(s)	270, 895
BbvI	GCAGC	2 cut(s)	220, 630
BccI	CCATC	2 cut(s)	451, 679
BciT130I	CCWGG	3 cut(s)	102, 633, 855
BcnI	CCSGG	1 cut(s)	345
BcoDI	GTCTC	2 cut(s)	296, 710
BfaI	CTAG	4 cut(s)	47, 500, 516, 570
BfmI	CTRYAG	1 cut(s)	606
BfoI	RGCGCY	2 cut(s)	167, 944
BglII	AGATCT	1 cut(s)	548
BisI	GCNGC	2 cut(s)	234, 619
BlsI	GCNGC	2 cut(s)	235, 620
Bme1390I	CCNGG	4 cut(s)	102, 345, 633, 855
BmgT120I	GGNCC	2 cut(s)	20, 806
BmiI	GGNNCC	4 cut(s)	72, 165, 807, 851
BmrFI	CCNGG	4 cut(s)	102, 345, 633, 855
BmsI	GCATC	1 cut(s)	864
BpmI	CTGGAG	2 cut(s)	138, 957
BpuEI	CTTGAG	1 cut(s)	491
BpuMI	CCSGG	1 cut(s)	345
BsaHI	GRCGYC	1 cut(s)	164
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	2 cut(s)	853, 854
BsaWI	WCCGGW	1 cut(s)	895
BsaXI	ACNNNNNCTCC	4 cut(s)	341, 371, 882, 912
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 638, 686
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	3 cut(s)	155, 667, 940
Bse3DI	GCAATG	1 cut(s)	444
BseBI	CCWGG	3 cut(s)	102, 633, 855
BseDI	CCNNGG	2 cut(s)	853, 854
BseGI	GGATG	1 cut(s)	462
BseLI	CCNNNNNNNGG	3 cut(s)	101, 638, 686
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	4 cut(s)	158, 401, 570, 935
BseNI	ACTGG	3 cut(s)	155, 667, 940
BseSI	GKGCMC	1 cut(s)	854
BseXI	GCAGC	2 cut(s)	220, 630
BseYI	CCCAGC	1 cut(s)	22
BsgI	GTGCAG	1 cut(s)	660
Bsh1236I	CGCG	3 cut(s)	315, 336, 446
BshFI	GGCC	2 cut(s)	21, 808
BshNI	GGYRCC	2 cut(s)	163, 849
BsiHKAI	GWGCWC	2 cut(s)	270, 895
BsiSI	CCGG	3 cut(s)	288, 344, 896
BslI	CCNNNNNNNGG	3 cut(s)	101, 638, 686
BsmAI	GTCTC	2 cut(s)	296, 710
BsmI	GAATGC	2 cut(s)	621, 1032
BsnI	GGCC	2 cut(s)	21, 808
Bso31I	GGTCTC	1 cut(s)	296
Bsp1286I	GDGCHC	3 cut(s)	270, 854, 895
Bsp1407I	TGTACA	2 cut(s)	709, 748
Bsp143I	GATC	5 cut(s)	415, 466, 496, 548, 1013
Bsp68I	TCGCGA	1 cut(s)	315
BspACI	CCGC	6 cut(s)	83, 89, 137, 170, 334, 404
BspANI	GGCC	2 cut(s)	21, 808
BspCNI	CTCAG	4 cut(s)	157, 400, 569, 936
BspFNI	CGCG	3 cut(s)	315, 336, 446
BspLI	GGNNCC	4 cut(s)	72, 165, 807, 851
BspMAI	CTGCAG	1 cut(s)	610
BspPI	GGATC	1 cut(s)	423
BspT107I	GGYRCC	2 cut(s)	163, 849
BspTNI	GGTCTC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	444
BsrFI	RCCGGY	1 cut(s)	287
BsrGI	TGTACA	2 cut(s)	709, 748
BsrI	ACTGG	3 cut(s)	155, 667, 940
BssAI	RCCGGY	1 cut(s)	287
BssECI	CCNNGG	2 cut(s)	853, 854
BssMI	GATC	5 cut(s)	415, 466, 496, 548, 1013
BssNI	GRCGYC	1 cut(s)	164
BssSI	CACGAG	1 cut(s)	713
Bst2BI	CACGAG	1 cut(s)	713
Bst2UI	CCWGG	3 cut(s)	102, 633, 855
Bst6I	CTCTTC	1 cut(s)	335
BstACI	GRCGYC	1 cut(s)	164
BstAUI	TGTACA	2 cut(s)	709, 748
BstC8I	GCNNGC	3 cut(s)	444, 928, 985
BstDEI	CTNAG	5 cut(s)	144, 387, 522, 556, 944
BstF5I	GGATG	1 cut(s)	462
BstFNI	CGCG	3 cut(s)	315, 336, 446
BstH2I	RGCGCY	2 cut(s)	167, 944
BstHHI	GCGC	3 cut(s)	166, 448, 943
BstKTI	GATC	5 cut(s)	418, 469, 499, 551, 1016
BstMAI	GTCTC	2 cut(s)	296, 710
BstMBI	GATC	5 cut(s)	415, 466, 496, 548, 1013
BstMWI	GCNNNNNNNGC	6 cut(s)	145, 230, 434, 443, 899, 1036
BstNI	CCWGG	3 cut(s)	102, 633, 855
BstNSI	RCATGY	2 cut(s)	631, 816
BstSCI	CCNGG	4 cut(s)	100, 343, 631, 853
BstSFI	CTRYAG	1 cut(s)	606
BstSLI	GKGCMC	1 cut(s)	854
BstUI	CGCG	3 cut(s)	315, 336, 446
BstV1I	GCAGC	2 cut(s)	220, 630
BstX2I	RGATCY	1 cut(s)	548
BstYI	RGATCY	1 cut(s)	548
BsuRI	GGCC	2 cut(s)	21, 808
BtsCI	GGATG	1 cut(s)	462
BtsI	GCAGTG	1 cut(s)	921
BtsIMutI	CAGTG	2 cut(s)	162, 921
BtuMI	TCGCGA	1 cut(s)	315
Cac8I	GCNNGC	3 cut(s)	444, 928, 985
CfoI	GCGC	3 cut(s)	166, 448, 943
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	2 cut(s)	20, 806
Csp6I	GTAC	3 cut(s)	710, 749, 816
CviAII	CATG	7 cut(s)	67, 628, 658, 686, 777, 813, 994
CviQI	GTAC	3 cut(s)	710, 749, 816
DdeI	CTNAG	5 cut(s)	144, 387, 522, 556, 944
DinI	GGCGCC	1 cut(s)	165
DpnI	GATC	5 cut(s)	417, 468, 498, 550, 1015
DpnII	GATC	5 cut(s)	415, 466, 496, 548, 1013
Eam1104I	CTCTTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	335
EciI	GGCGGA	1 cut(s)	126
Ecl136II	GAGCTC	2 cut(s)	268, 893
Eco24I	GRGCYC	2 cut(s)	270, 895
Eco31I	GGTCTC	1 cut(s)	296
Eco47III	AGCGCT	1 cut(s)	942
Eco53kI	GAGCTC	2 cut(s)	268, 893
EcoICRI	GAGCTC	2 cut(s)	268, 893
EcoRII	CCWGG	3 cut(s)	100, 631, 853
EcoT38I	GRGCYC	2 cut(s)	270, 895
EgeI	GGCGCC	1 cut(s)	165
EheI	GGCGCC	1 cut(s)	165
FaeI	CATG	7 cut(s)	70, 631, 661, 689, 780, 816, 997
FatI	CATG	7 cut(s)	66, 627, 657, 685, 776, 812, 993
FauI	CCCGC	1 cut(s)	90
FauNDI	CATATG	1 cut(s)	886
Fnu4HI	GCNGC	2 cut(s)	234, 619
FokI	GGATG	1 cut(s)	469
FriOI	GRGCYC	2 cut(s)	270, 895
Fsp4HI	GCNGC	2 cut(s)	234, 619
FspBI	CTAG	4 cut(s)	47, 500, 516, 570
GlaI	GCGC	3 cut(s)	165, 447, 942
GluI	GCNGC	2 cut(s)	234, 619
GsaI	CCCAGC	1 cut(s)	26
GsuI	CTGGAG	2 cut(s)	138, 957
HaeII	RGCGCY	2 cut(s)	167, 944
HaeIII	GGCC	2 cut(s)	21, 808
HapII	CCGG	3 cut(s)	288, 344, 896
HhaI	GCGC	3 cut(s)	166, 448, 943
Hin1I	GRCGYC	1 cut(s)	164
Hin1II	CATG	7 cut(s)	70, 631, 661, 689, 780, 816, 997
Hin6I	GCGC	3 cut(s)	164, 446, 941
HinP1I	GCGC	3 cut(s)	164, 446, 941
HinfI	GANTC	3 cut(s)	353, 602, 946
HpaII	CCGG	3 cut(s)	288, 344, 896
Hpy166II	GTNNAC	2 cut(s)	112, 712
Hpy188I	TCNGA	3 cut(s)	272, 368, 559
Hpy188III	TCNNGA	6 cut(s)	314, 470, 531, 599, 917, 1017
Hpy8I	GTNNAC	2 cut(s)	112, 712
Hpy99I	CGWCG	2 cut(s)	266, 287
HpyAV	CCTTC	1 cut(s)	983
HpyCH4V	TGCA	6 cut(s)	442, 608, 677, 877, 902, 955
HpyF10VI	GCNNNNNNNGC	6 cut(s)	145, 230, 434, 443, 899, 1036
HpyF3I	CTNAG	5 cut(s)	144, 387, 522, 556, 944
Hsp92I	GRCGYC	1 cut(s)	164
Hsp92II	CATG	7 cut(s)	70, 631, 661, 689, 780, 816, 997
HspAI	GCGC	3 cut(s)	164, 446, 941
KasI	GGCGCC	1 cut(s)	163
Kzo9I	GATC	5 cut(s)	415, 466, 496, 548, 1013
LmnI	GCTCC	7 cut(s)	76, 273, 434, 820, 890, 898, 938
Lsp1109I	GCAGC	2 cut(s)	220, 630
LweI	GCATC	1 cut(s)	864
MaeI	CTAG	4 cut(s)	47, 500, 516, 570
MaeIII	GTNAC	1 cut(s)	347
MalI	GATC	5 cut(s)	417, 468, 498, 550, 1015
MboI	GATC	5 cut(s)	415, 466, 496, 548, 1013
MboII	GAAGA	4 cut(s)	311, 322, 735, 883
MflI	RGATCY	1 cut(s)	548
MhlI	GDGCHC	3 cut(s)	270, 854, 895
MluCI	AATT	7 cut(s)	11, 37, 511, 643, 739, 831, 866
Mly113I	GGCGCC	1 cut(s)	164
MlyI	GAGTC	2 cut(s)	362, 955
MmeI	TCCRAC	1 cut(s)	806
MslI	CAYNNNNRTG	1 cut(s)	626
MspA1I	CMGCKG	1 cut(s)	983
MspI	CCGG	3 cut(s)	288, 344, 896
MspR9I	CCNGG	4 cut(s)	102, 345, 633, 855
Mva1269I	GAATGC	2 cut(s)	621, 1032
MvaI	CCWGG	3 cut(s)	102, 633, 855
MvnI	CGCG	3 cut(s)	315, 336, 446
MwoI	GCNNNNNNNGC	6 cut(s)	145, 230, 434, 443, 899, 1036
NarI	GGCGCC	1 cut(s)	164
NciI	CCSGG	1 cut(s)	345
NdeI	CATATG	1 cut(s)	886
NdeII	GATC	5 cut(s)	415, 466, 496, 548, 1013
NlaIII	CATG	7 cut(s)	70, 631, 661, 689, 780, 816, 997
NlaIV	GGNNCC	4 cut(s)	72, 165, 807, 851
NruI	TCGCGA	1 cut(s)	315
NspI	RCATGY	2 cut(s)	631, 816
PasI	CCCWGGG	1 cut(s)	854
PciI	ACATGT	1 cut(s)	812
PctI	GAATGC	2 cut(s)	621, 1032
PfeI	GAWTC	1 cut(s)	602
PflMI	CCANNNNNTGG	1 cut(s)	686
PkrI	GCNGC	2 cut(s)	235, 620
PleI	GAGTC	2 cut(s)	361, 954
PluTI	GGCGCC	1 cut(s)	167
PpsI	GAGTC	2 cut(s)	361, 954
PscI	ACATGT	1 cut(s)	812
Psp124BI	GAGCTC	2 cut(s)	270, 895
Psp6I	CCWGG	3 cut(s)	100, 631, 853
PspFI	CCCAGC	1 cut(s)	22
PspGI	CCWGG	3 cut(s)	100, 631, 853
PspN4I	GGNNCC	4 cut(s)	72, 165, 807, 851
PspPI	GGNCC	2 cut(s)	20, 806
PstI	CTGCAG	1 cut(s)	610
PsuI	RGATCY	1 cut(s)	548
PvuII	CAGCTG	1 cut(s)	983
RruI	TCGCGA	1 cut(s)	315
RsaI	GTAC	3 cut(s)	711, 750, 817
RsaNI	GTAC	3 cut(s)	710, 749, 816
RseI	CAYNNNNRTG	1 cut(s)	626
SacI	GAGCTC	2 cut(s)	270, 895
SatI	GCNGC	2 cut(s)	234, 619
Sau3AI	GATC	5 cut(s)	415, 466, 496, 548, 1013
Sau96I	GGNCC	2 cut(s)	20, 806
SchI	GAGTC	2 cut(s)	362, 955
ScrFI	CCNGG	4 cut(s)	102, 345, 633, 855
SduI	GDGCHC	3 cut(s)	270, 854, 895
SfaNI	GCATC	1 cut(s)	864
SfcI	CTRYAG	1 cut(s)	606
SfoI	GGCGCC	1 cut(s)	165
SmiMI	CAYNNNNRTG	1 cut(s)	626
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
Sse9I	AATT	7 cut(s)	11, 37, 511, 643, 739, 831, 866
SsiI	CCGC	6 cut(s)	83, 89, 137, 170, 334, 404
SspDI	GGCGCC	1 cut(s)	163
SspMI	CTAG	4 cut(s)	47, 500, 516, 570
SstI	GAGCTC	2 cut(s)	270, 895
StyD4I	CCNGG	4 cut(s)	100, 343, 631, 853
TasI	AATT	7 cut(s)	11, 37, 511, 643, 739, 831, 866
TatI	WGTACW	2 cut(s)	709, 748
TfiI	GAWTC	1 cut(s)	602
TscAI	CASTG	2 cut(s)	162, 928
TseI	GCWGC	2 cut(s)	233, 618
TspDTI	ATGAA	3 cut(s)	558, 567, 850
TspGWI	ACGGA	2 cut(s)	393, 833
TspRI	CASTG	2 cut(s)	162, 928
Van91I	CCANNNNNTGG	1 cut(s)	686
XapI	RAATTY	1 cut(s)	11
XceI	RCATGY	2 cut(s)	631, 816
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1018
XspI	CTAG	4 cut(s)	47, 500, 516, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.