Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007111

Physical Location & Seq

Genomic Coordinates Reverse (-)

18082124 .. 18085173

Gene Structure 3050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG184900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGACGAGATGGCCGCCTATTACCCTCCACCGCCTCCGCCACCAGGCTCCGTCCACTATCCATACTACCACCACCAGCCACCTCAACCGCCTGCCCCCGTGGCCCCTCCGCCGCCGCCGCAGCAGCACCACCACCACCACTTGGTTCATCAGCCCTACTACCCTCCCCAGCCTCAGCCTCAGCCTTACGCTCCCTACGCGCCGCCACTCGTCGCCCAGGCAGCCTACGACGAGGTCCGGACCCTCTTCGTGGCCGGCCTACCCGAAGATGTCAAGCCCCGTGAAATCTACAACCTCTTCCGCGAGTTTCCCGGTTACGAGTCCTCTCACCTCCGAACCCCCACCGAGAAAACTCAGCCTTTTGCGTTTGCGGTGTTCTTGGACCAGCAATCTGCGATCGGAGCAATGCAAGCACTGAATGGGATGGTATTTGATCTTGAGAAGGGGTCGACATTATATATAGATCTAGCAAAATCTAATTCTAGGTCCAAACGCTCAAGAACAGACGATGAAAGATCTGGCTCGGATAAGAAAGCTAGAGGTTCATCATATTCAAGGGCCACTTCTGATCCTGGTGTTGGCAGCATTCACATGCCTGGAATGGGTAATTCTGCTTACAACATGATTGGTTATCCATCTGCACCAAGTCATGGCAGCTTCAGTGGCAGTGGTGTAAATGAGCCAATAGCCTCAAACATGAATAGTTCTTCAGCACAACATTTTCCACAAAACAATACTCCATGCCCAACACTTTTTGTGGCTAATTTGGGGCCAACTTGTACGGAGCAAGAGCTAGTTCAAGTATTTTCGAGGTGCCCTGGGTTTATAAAATTGAAGATGCAGAGCACATATGGGGCTCCAGTTGCATTTGTTGATTTTCAGGATACTGCTAGTTCAACTGGCGCACTGGGTCATCTGCAGGGCACAATTCTCTACTCGTCAACATCTGGAGAGGGCATGAGATTAGAGTTTGCCAAATCACGAATGGGAATGCGGAAGAAGCCGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035239 GO:0035295 GO:0042127 GO:0042802 GO:0042803 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046983 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048660 GO:0048661 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051147 GO:0051148 GO:0051150 GO:0051151 GO:0051171 GO:0051252 GO:0055123 GO:0060255 GO:0065007 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

336

Amino Acids

36.73

Weight (kDa)

7.79

Isoelectric Point (pI)

59.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	82 - 145	1.4e-11	RNA recognition motif
RRM_1	PF00076	251 - 314	2e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42240 AT2G42240 AT2G42240
fragaria_vesca	FvH4_1g16380 FvH4_1g16380
malus_domestica	MD02G1176300.v1.1 MD15G1286700.v1.1
prunus_persica	Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1
pyrus_communis	pycom02g14250 pycom15g25000
rosa_chinensis	RchiOBHm_Chr2g0106251
rosa_laevigata	RLG00000017483
rosa_multiflora	Rmu_sc0008603.1_g000013
rosa_roxburghii	Rroxscaffold_2G00137330
rosa_rugosa	Rorug02G0133700 Rorug02G0133800
rosa_samantha	Rh2AG184900 Rh2BG195200 Rh2CG190000 Rh2DG191100
rosa_wichuraiana	Rw2G014440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	827
AccB1I	GGYRCC	1 cut(s)	813
AccB7I	CCANNNNNTGG	2 cut(s)	142, 650
AccI	GTMKAC	1 cut(s)	449
AccII	CGCG	2 cut(s)	200, 303
AccIII	TCCGGA	1 cut(s)	237
AclWI	GGATC	1 cut(s)	563
AcoI	YGGCCR	2 cut(s)	12, 252
AcuI	CTGAAG	2 cut(s)	643, 693
AfaI	GTAC	1 cut(s)	781
AfiI	CCNNNNNNNGG	6 cut(s)	44, 142, 250, 578, 602, 650
AgsI	TTSAA	4 cut(s)	555, 800, 835, 897
AjnI	CCWGG	5 cut(s)	43, 216, 571, 595, 817
AluBI	AGCT	3 cut(s)	536, 657, 793
AluI	AGCT	3 cut(s)	536, 657, 793
Alw21I	GWGCWC	1 cut(s)	848
AlwI	GGATC	1 cut(s)	563
Aor13HI	TCCGGA	1 cut(s)	237
AoxI	GGCC	6 cut(s)	12, 102, 252, 256, 558, 770
ApeKI	GCWGC	5 cut(s)	121, 124, 221, 582, 654
AspLEI	GCGC	2 cut(s)	202, 905
AspS9I	GGNCC	7 cut(s)	103, 235, 240, 382, 486, 558, 770
AsuC2I	CCSGG	1 cut(s)	312
AsuHPI	GGTGA	1 cut(s)	320
AvaII	GGWCC	4 cut(s)	235, 240, 382, 486
BaeGI	GKGCMC	2 cut(s)	818, 926
BanI	GGYRCC	1 cut(s)	813
BanII	GRGCYC	1 cut(s)	859
Bbv12I	GWGCWC	1 cut(s)	848
BbvCI	CCTCAGC	2 cut(s)	174, 180
BbvI	GCAGC	5 cut(s)	133, 136, 233, 594, 666
BccI	CCATC	3 cut(s)	4, 418, 643
BciT130I	CCWGG	5 cut(s)	45, 218, 573, 597, 819
BciVI	GTATCC	1 cut(s)	877
BcnI	CCSGG	1 cut(s)	312
BfaI	CTAG	5 cut(s)	467, 483, 537, 794, 891
BfmI	CTRYAG	1 cut(s)	917
BfuI	GTATCC	1 cut(s)	877
BglI	GCCNNNNNGGC	1 cut(s)	101
BglII	AGATCT	2 cut(s)	463, 515
Bme1390I	CCNGG	6 cut(s)	45, 218, 312, 573, 597, 819
Bme18I	GGWCC	4 cut(s)	235, 240, 382, 486
BmgT120I	GGNCC	7 cut(s)	103, 235, 240, 382, 486, 558, 770
BmiI	GGNNCC	6 cut(s)	49, 105, 242, 771, 815, 858
BmrFI	CCNGG	6 cut(s)	45, 218, 312, 573, 597, 819
BmrI	ACTGGG	1 cut(s)	917
BmsI	GCATC	1 cut(s)	828
BmuI	ACTGGG	1 cut(s)	917
BpmI	CTGGAG	2 cut(s)	843, 969
Bpu10I	CCTNAGC	2 cut(s)	174, 180
BpuEI	CTTGAG	2 cut(s)	458, 481
BpuMI	CCSGG	1 cut(s)	312
BsaJI	CCNNGG	4 cut(s)	99, 216, 817, 818
BsaWI	WCCGGW	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	6 cut(s)	44, 142, 250, 578, 602, 650
Bse118I	RCCGGY	1 cut(s)	254
Bse1I	ACTGG	3 cut(s)	860, 904, 912
Bse3DI	GCAATG	1 cut(s)	411
BseAI	TCCGGA	1 cut(s)	237
BseBI	CCWGG	5 cut(s)	45, 218, 573, 597, 819
BseDI	CCNNGG	4 cut(s)	99, 216, 817, 818
BseGI	GGATG	1 cut(s)	429
BseLI	CCNNNNNNNGG	6 cut(s)	44, 142, 250, 578, 602, 650
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	3 cut(s)	188, 194, 368
BseNI	ACTGG	3 cut(s)	860, 904, 912
BseSI	GKGCMC	2 cut(s)	818, 926
BseXI	GCAGC	5 cut(s)	133, 136, 233, 594, 666
BseYI	CCCAGC	1 cut(s)	168
BsgI	GTGCAG	1 cut(s)	624
Bsh1236I	CGCG	2 cut(s)	200, 303
Bsh1285I	CGRYCG	1 cut(s)	399
BshFI	GGCC	6 cut(s)	14, 104, 254, 258, 560, 772
BshNI	GGYRCC	1 cut(s)	813
BsiEI	CGRYCG	1 cut(s)	399
BsiHKAI	GWGCWC	1 cut(s)	848
BsiSI	CCGG	3 cut(s)	238, 255, 312
BslI	CCNNNNNNNGG	6 cut(s)	44, 142, 250, 578, 602, 650
BsmI	GAATGC	2 cut(s)	585, 996
BsnI	GGCC	6 cut(s)	14, 104, 254, 258, 560, 772
Bsp1286I	GDGCHC	4 cut(s)	818, 848, 859, 926
Bsp13I	TCCGGA	1 cut(s)	237
Bsp143I	GATC	5 cut(s)	396, 433, 463, 515, 568
BspANI	GGCC	6 cut(s)	14, 104, 254, 258, 560, 772
BspCNI	CTCAG	3 cut(s)	187, 193, 367
BspEI	TCCGGA	1 cut(s)	237
BspFNI	CGCG	2 cut(s)	200, 303
BspLI	GGNNCC	6 cut(s)	49, 105, 242, 771, 815, 858
BspMAI	CTGCAG	1 cut(s)	921
BspPI	GGATC	1 cut(s)	563
BspT107I	GGYRCC	1 cut(s)	813
BsrDI	GCAATG	1 cut(s)	411
BsrFI	RCCGGY	1 cut(s)	254
BsrI	ACTGG	3 cut(s)	860, 904, 912
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	4 cut(s)	99, 216, 817, 818
BssMI	GATC	5 cut(s)	396, 433, 463, 515, 568
Bst2UI	CCWGG	5 cut(s)	45, 218, 573, 597, 819
Bst6I	CTCTTC	2 cut(s)	251, 302
BstC8I	GCNNGC	3 cut(s)	93, 256, 411
BstDEI	CTNAG	3 cut(s)	174, 180, 354
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	429
BstFNI	CGCG	2 cut(s)	200, 303
BstHHI	GCGC	2 cut(s)	202, 905
BstKTI	GATC	5 cut(s)	399, 436, 466, 518, 571
BstMBI	GATC	5 cut(s)	396, 433, 463, 515, 568
BstMCI	CGRYCG	1 cut(s)	399
BstNI	CCWGG	5 cut(s)	45, 218, 573, 597, 819
BstNSI	RCATGY	1 cut(s)	595
BstSCI	CCNGG	6 cut(s)	43, 216, 310, 571, 595, 817
BstSFI	CTRYAG	1 cut(s)	917
BstSLI	GKGCMC	2 cut(s)	818, 926
BstUI	CGCG	2 cut(s)	200, 303
BstV1I	GCAGC	5 cut(s)	133, 136, 233, 594, 666
BstX2I	RGATCY	2 cut(s)	463, 515
BstYI	RGATCY	2 cut(s)	463, 515
BsuI	GTATCC	1 cut(s)	877
BsuRI	GGCC	6 cut(s)	14, 104, 254, 258, 560, 772
BtgI	CCRYGG	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	429
BtsI	GCAGTG	1 cut(s)	673
BtsIMutI	CAGTG	4 cut(s)	413, 667, 673, 905
Cac8I	GCNNGC	3 cut(s)	93, 256, 411
CfoI	GCGC	2 cut(s)	202, 905
Cfr10I	RCCGGY	1 cut(s)	254
Cfr13I	GGNCC	7 cut(s)	103, 235, 240, 382, 486, 558, 770
Csp6I	GTAC	1 cut(s)	780
CviAII	CATG	6 cut(s)	592, 622, 650, 697, 741, 958
CviQI	GTAC	1 cut(s)	780
DdeI	CTNAG	3 cut(s)	174, 180, 354
DpnI	GATC	5 cut(s)	398, 435, 465, 517, 570
DpnII	GATC	5 cut(s)	396, 433, 463, 515, 568
EaeI	YGGCCR	2 cut(s)	12, 252
Eam1104I	CTCTTC	2 cut(s)	251, 302
EarI	CTCTTC	2 cut(s)	251, 302
EciI	GGCGGA	2 cut(s)	27, 99
Eco24I	GRGCYC	1 cut(s)	859
Eco47I	GGWCC	4 cut(s)	235, 240, 382, 486
Eco57I	CTGAAG	2 cut(s)	643, 693
EcoRII	CCWGG	5 cut(s)	43, 216, 571, 595, 817
EcoT38I	GRGCYC	1 cut(s)	859
FaeI	CATG	6 cut(s)	595, 625, 653, 700, 744, 961
FalI	AAGNNNNNCTT	2 cut(s)	547, 579
FatI	CATG	6 cut(s)	591, 621, 649, 696, 740, 957
FauNDI	CATATG	1 cut(s)	850
FblI	GTMKAC	1 cut(s)	449
FokI	GGATG	1 cut(s)	436
FriOI	GRGCYC	1 cut(s)	859
FseI	GGCCGGCC	1 cut(s)	258
FspBI	CTAG	5 cut(s)	467, 483, 537, 794, 891
GlaI	GCGC	2 cut(s)	201, 904
GsaI	CCCAGC	1 cut(s)	172
GsuI	CTGGAG	2 cut(s)	843, 969
HaeIII	GGCC	6 cut(s)	14, 104, 254, 258, 560, 772
HapII	CCGG	3 cut(s)	238, 255, 312
HhaI	GCGC	2 cut(s)	202, 905
Hin1II	CATG	6 cut(s)	595, 625, 653, 700, 744, 961
Hin6I	GCGC	2 cut(s)	200, 903
HinP1I	GCGC	2 cut(s)	200, 903
HincII	GTYRAC	2 cut(s)	450, 942
HindII	GTYRAC	2 cut(s)	450, 942
HinfI	GANTC	1 cut(s)	320
HpaII	CCGG	3 cut(s)	238, 255, 312
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	3 cut(s)	55, 450, 942
Hpy188I	TCNGA	4 cut(s)	335, 401, 526, 568
Hpy188III	TCNNGA	6 cut(s)	238, 437, 498, 881, 948, 981
Hpy8I	GTNNAC	3 cut(s)	55, 450, 942
Hpy99I	CGWCG	2 cut(s)	215, 233
HpyAV	CCTTC	1 cut(s)	436
HpyCH4V	TGCA	5 cut(s)	409, 641, 841, 866, 919
HpyF3I	CTNAG	3 cut(s)	174, 180, 354
Hsp92II	CATG	6 cut(s)	595, 625, 653, 700, 744, 961
HspAI	GCGC	2 cut(s)	200, 903
Kpn2I	TCCGGA	1 cut(s)	237
KroI	GCCGGC	1 cut(s)	254
KroNI	GCCGGC	1 cut(s)	256
Kzo9I	GATC	5 cut(s)	396, 433, 463, 515, 568
LmnI	GCTCC	5 cut(s)	53, 196, 401, 784, 862
Lsp1109I	GCAGC	5 cut(s)	133, 136, 233, 594, 666
LweI	GCATC	1 cut(s)	828
MaeI	CTAG	5 cut(s)	467, 483, 537, 794, 891
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	5 cut(s)	398, 435, 465, 517, 570
MboI	GATC	5 cut(s)	396, 433, 463, 515, 568
MboII	GAAGA	6 cut(s)	238, 278, 289, 699, 847, 1009
MflI	RGATCY	2 cut(s)	463, 515
MhlI	GDGCHC	4 cut(s)	818, 848, 859, 926
MluCI	AATT	5 cut(s)	478, 607, 763, 830, 927
MlyI	GAGTC	1 cut(s)	329
MroI	TCCGGA	1 cut(s)	237
MroNI	GCCGGC	1 cut(s)	254
MslI	CAYNNNNRTG	1 cut(s)	590
MspI	CCGG	3 cut(s)	238, 255, 312
MspR9I	CCNGG	6 cut(s)	45, 218, 312, 573, 597, 819
Mva1269I	GAATGC	2 cut(s)	585, 996
MvaI	CCWGG	5 cut(s)	45, 218, 573, 597, 819
MvnI	CGCG	2 cut(s)	200, 303
NaeI	GCCGGC	1 cut(s)	256
NciI	CCSGG	1 cut(s)	312
NdeI	CATATG	1 cut(s)	850
NdeII	GATC	5 cut(s)	396, 433, 463, 515, 568
NgoMIV	GCCGGC	1 cut(s)	254
NlaIII	CATG	6 cut(s)	595, 625, 653, 700, 744, 961
NlaIV	GGNNCC	6 cut(s)	49, 105, 242, 771, 815, 858
NspI	RCATGY	1 cut(s)	595
PasI	CCCWGGG	1 cut(s)	818
PctI	GAATGC	2 cut(s)	585, 996
PdiI	GCCGGC	1 cut(s)	256
PflFI	GACNNNGTC	1 cut(s)	233
PflMI	CCANNNNNTGG	2 cut(s)	142, 650
Ple19I	CGATCG	1 cut(s)	399
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
PsiI	TTATAA	1 cut(s)	827
Psp6I	CCWGG	5 cut(s)	43, 216, 571, 595, 817
PspFI	CCCAGC	1 cut(s)	168
PspGI	CCWGG	5 cut(s)	43, 216, 571, 595, 817
PspN4I	GGNNCC	6 cut(s)	49, 105, 242, 771, 815, 858
PspPI	GGNCC	7 cut(s)	103, 235, 240, 382, 486, 558, 770
PstI	CTGCAG	1 cut(s)	921
PsuI	RGATCY	2 cut(s)	463, 515
PsyI	GACNNNGTC	1 cut(s)	233
PvuI	CGATCG	1 cut(s)	399
RigI	GGCCGGCC	1 cut(s)	258
RsaI	GTAC	1 cut(s)	781
RsaNI	GTAC	1 cut(s)	780
RseI	CAYNNNNRTG	1 cut(s)	590
SalI	GTCGAC	1 cut(s)	448
Sau3AI	GATC	5 cut(s)	396, 433, 463, 515, 568
Sau96I	GGNCC	7 cut(s)	103, 235, 240, 382, 486, 558, 770
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	6 cut(s)	45, 218, 312, 573, 597, 819
SduI	GDGCHC	4 cut(s)	818, 848, 859, 926
SfaNI	GCATC	1 cut(s)	828
SfcI	CTRYAG	1 cut(s)	917
SinI	GGWCC	4 cut(s)	235, 240, 382, 486
SmiMI	CAYNNNNRTG	1 cut(s)	590
SmlI	CTYRAG	2 cut(s)	437, 496
SmoI	CTYRAG	2 cut(s)	437, 496
Sse9I	AATT	5 cut(s)	478, 607, 763, 830, 927
SspMI	CTAG	5 cut(s)	467, 483, 537, 794, 891
StyD4I	CCNGG	6 cut(s)	43, 216, 310, 571, 595, 817
TaqI	TCGA	2 cut(s)	449, 809
TasI	AATT	5 cut(s)	478, 607, 763, 830, 927
TauI	GCSGC	5 cut(s)	17, 115, 118, 121, 205
TscAI	CASTG	4 cut(s)	420, 667, 673, 912
TseI	GCWGC	5 cut(s)	121, 124, 221, 582, 654
TspDTI	ATGAA	4 cut(s)	137, 525, 534, 713
TspGWI	ACGGA	2 cut(s)	40, 797
TspRI	CASTG	4 cut(s)	420, 667, 673, 912
Tth111I	GACNNNGTC	1 cut(s)	233
Van91I	CCANNNNNTGG	2 cut(s)	142, 650
VpaK11BI	GGWCC	4 cut(s)	235, 240, 382, 486
XceI	RCATGY	1 cut(s)	595
XcmI	CCANNNNNNNNNTGG	1 cut(s)	982
XmiI	GTMKAC	1 cut(s)	449
XspI	CTAG	5 cut(s)	467, 483, 537, 794, 891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.