Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007111

Physical Location & Seq

Genomic Coordinates Reverse (-)

26254394 .. 26257980

Gene Structure 3587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1286700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCTGCCTATTACCCGCCACCGCCTCCACCACCAGGCTCGGTTGACTACACCCCCCACCCACAACCCCCGCCGCCTCAACCGCCCCCAGTGGTGGCGCCACCGCCTCAGCACTACTTGGTTCAGCCCTACTTCCCTCAACAGCCACCATCTTTCGCTTCCTACGTTGCCCCTCGTATCCCCCAACCCTCATACGACGAGCTCCGAACCCTATTCGTCGCCGGTCTCTCAGAAGATGTCAAGCCCCTCGAAATCTACAACCTCTTCCGCGAGTTTCCGGGTTACGAATCCTCCCACCTCCGAACCCCCACCGGAAAGTCTCAGCCTTGTGCTTTCGCGGTGTTCTTAGATCAGCAGTCTGCCATTGGAGCAATGCATGCGCTGAATGGGATGGTGTTTGATCTTGAGAAGGGATCAAAATTATATATTGATCTAGCAAAATCTAATTCTAGGTCAAAGCGCTCAAGAACAGATGATGAAAGACCTAGCTCAGATAAGAGAGCTAGAAGTTCGTCATATTCTAGGGGAACTCCTGATTCTGTTGTTTATGTGTTGGCAGCATTCACGTGCCTGGAATGGGAATTCTGCTTACAACATGATTGCTTCAATGACAGAGCTGTACACAAGACAATAGCCCTAAACATGAATAATTCTTCAGCACAGCATTTTCCACAAAATAATACTCCATGTCCAACGCTTTTCGTGGCTAACTTGGGGCCAACATGTACGGAGCAAGAGCTAATTCAAGTGTTTTCAAGGTGCCCTGGGTTCATAAAATTGAAGATGCAAAGCACATATGGAGCTCCAGTTGCTTTTGTTGATTTTCAGGATACTGCCTGCTCAACTGGAGCGCTGAGTCATCTGCAAGGCACATTTCTCTACTCTTCAACAACTGGCGAAGGCATGAGATTAGAATACGCCAGATCACGAATGGGAATGCGTAAGAAGCCGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035239 GO:0035295 GO:0042127 GO:0042802 GO:0042803 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046983 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048660 GO:0048661 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051147 GO:0051148 GO:0051150 GO:0051151 GO:0051171 GO:0051252 GO:0055123 GO:0060255 GO:0065007 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

319

Amino Acids

35.36

Weight (kDa)

8.35

Isoelectric Point (pI)

61.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	71 - 134	1.1e-09	RNA recognition motif
RRM_1	PF00076	233 - 296	9.1e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42240 AT2G42240 AT2G42240
fragaria_vesca	FvH4_1g16380 FvH4_1g16380
malus_domestica	MD02G1176300.v1.1 MD15G1286700.v1.1
prunus_persica	Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1
pyrus_communis	pycom02g14250 pycom15g25000
rosa_chinensis	RchiOBHm_Chr2g0106251
rosa_laevigata	RLG00000017483
rosa_multiflora	Rmu_sc0008603.1_g000013
rosa_roxburghii	Rroxscaffold_2G00137330
rosa_rugosa	Rorug02G0133700 Rorug02G0133800
rosa_samantha	Rh2AG184900 Rh2BG195200 Rh2CG190000 Rh2DG191100
rosa_wichuraiana	Rw2G014440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	97, 759
AccII	CGCG	2 cut(s)	270, 338
AciI	CCGC	8 cut(s)	17, 23, 71, 74, 83, 104, 268, 338
AclWI	GGATC	1 cut(s)	421
AcsI	RAATTY	1 cut(s)	581
AcuI	CTGAAG	1 cut(s)	639
AcvI	CACGTG	1 cut(s)	567
AcyI	GRCGYC	1 cut(s)	98
AfaI	GTAC	2 cut(s)	621, 727
AfeI	AGCGCT	2 cut(s)	461, 852
AfiI	CCNNNNNNNGG	3 cut(s)	35, 94, 577
AflIII	ACRYGT	1 cut(s)	722
AgsI	TTSAA	5 cut(s)	607, 746, 756, 781, 888
AjnI	CCWGG	3 cut(s)	34, 570, 763
AluBI	AGCT	6 cut(s)	202, 489, 503, 617, 739, 803
AluI	AGCT	6 cut(s)	202, 489, 503, 617, 739, 803
Alw21I	GWGCWC	2 cut(s)	204, 805
Alw26I	GTCTC	2 cut(s)	230, 324
AlwI	GGATC	1 cut(s)	421
Aor51HI	AGCGCT	2 cut(s)	461, 852
AoxI	GGCC	1 cut(s)	716
ApeKI	GCWGC	2 cut(s)	5, 557
ApoI	RAATTY	1 cut(s)	581
AspLEI	GCGC	4 cut(s)	100, 382, 462, 853
AspS9I	GGNCC	1 cut(s)	716
AsuC2I	CCSGG	1 cut(s)	279
BaeGI	GKGCMC	1 cut(s)	764
BanI	GGYRCC	2 cut(s)	97, 759
BanII	GRGCYC	2 cut(s)	204, 805
BbrPI	CACGTG	1 cut(s)	567
Bbv12I	GWGCWC	2 cut(s)	204, 805
BbvCI	CCTCAGC	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	569
BccI	CCATC	2 cut(s)	157, 385
BciT130I	CCWGG	3 cut(s)	36, 572, 765
BciVI	GTATCC	2 cut(s)	188, 823
BcnI	CCSGG	1 cut(s)	279
BcoDI	GTCTC	2 cut(s)	230, 324
BfaI	CTAG	5 cut(s)	434, 450, 486, 504, 522
BfoI	RGCGCY	3 cut(s)	101, 463, 854
BfuI	GTATCC	2 cut(s)	188, 823
BisI	GCNGC	3 cut(s)	6, 74, 558
BlsI	GCNGC	3 cut(s)	7, 75, 559
Bme1390I	CCNGG	4 cut(s)	36, 279, 572, 765
BmgT120I	GGNCC	1 cut(s)	716
BmiI	GGNNCC	3 cut(s)	99, 717, 761
BmrFI	CCNGG	4 cut(s)	36, 279, 572, 765
BmrI	ACTGGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	774
BmuI	ACTGGG	1 cut(s)	83
BpmI	CTGGAG	2 cut(s)	789, 867
Bpu10I	CCTNAGC	1 cut(s)	108
BpuEI	CTTGAG	2 cut(s)	425, 448
BpuMI	CCSGG	1 cut(s)	279
BsaAI	YACGTR	1 cut(s)	567
BsaHI	GRCGYC	1 cut(s)	98
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	2 cut(s)	763, 764
BsaWI	WCCGGW	1 cut(s)	311
BsaXI	ACNNNNNCTCC	4 cut(s)	275, 305, 792, 822
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 94, 577
Bse118I	RCCGGY	1 cut(s)	221
Bse1I	ACTGG	4 cut(s)	89, 806, 850, 898
Bse3DI	GCAATG	1 cut(s)	378
BseBI	CCWGG	3 cut(s)	36, 572, 765
BseDI	CCNNGG	2 cut(s)	763, 764
BseGI	GGATG	1 cut(s)	396
BseLI	CCNNNNNNNGG	3 cut(s)	35, 94, 577
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	5 cut(s)	122, 243, 335, 504, 845
BseNI	ACTGG	4 cut(s)	89, 806, 850, 898
BseSI	GKGCMC	1 cut(s)	764
BseXI	GCAGC	1 cut(s)	569
Bsh1236I	CGCG	2 cut(s)	270, 338
BshFI	GGCC	1 cut(s)	718
BshNI	GGYRCC	2 cut(s)	97, 759
BsiHKAI	GWGCWC	2 cut(s)	204, 805
BsiSI	CCGG	3 cut(s)	222, 278, 312
BslI	CCNNNNNNNGG	3 cut(s)	35, 94, 577
BsmAI	GTCTC	2 cut(s)	230, 324
BsmI	GAATGC	2 cut(s)	560, 942
BsnI	GGCC	1 cut(s)	718
Bso31I	GGTCTC	1 cut(s)	230
Bsp1286I	GDGCHC	3 cut(s)	204, 764, 805
Bsp1407I	TGTACA	1 cut(s)	619
Bsp143I	GATC	5 cut(s)	349, 400, 413, 430, 923
BspACI	CCGC	8 cut(s)	17, 23, 71, 74, 83, 104, 268, 338
BspANI	GGCC	1 cut(s)	718
BspCNI	CTCAG	5 cut(s)	121, 242, 334, 503, 846
BspFNI	CGCG	2 cut(s)	270, 338
BspLI	GGNNCC	3 cut(s)	99, 717, 761
BspPI	GGATC	1 cut(s)	421
BspT107I	GGYRCC	2 cut(s)	97, 759
BspTNI	GGTCTC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	378
BsrFI	RCCGGY	1 cut(s)	221
BsrGI	TGTACA	1 cut(s)	619
BsrI	ACTGG	4 cut(s)	89, 806, 850, 898
BssAI	RCCGGY	1 cut(s)	221
BssECI	CCNNGG	2 cut(s)	763, 764
BssMI	GATC	5 cut(s)	349, 400, 413, 430, 923
BssNI	GRCGYC	1 cut(s)	98
Bst2UI	CCWGG	3 cut(s)	36, 572, 765
Bst6I	CTCTTC	2 cut(s)	269, 889
BstACI	GRCGYC	1 cut(s)	98
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstAUI	TGTACA	1 cut(s)	619
BstBAI	YACGTR	1 cut(s)	567
BstC8I	GCNNGC	2 cut(s)	378, 838
BstDEI	CTNAG	6 cut(s)	108, 229, 321, 346, 490, 854
BstF5I	GGATG	1 cut(s)	396
BstFNI	CGCG	2 cut(s)	270, 338
BstH2I	RGCGCY	3 cut(s)	101, 463, 854
BstHHI	GCGC	4 cut(s)	100, 382, 462, 853
BstKTI	GATC	5 cut(s)	352, 403, 416, 433, 926
BstMAI	GTCTC	2 cut(s)	230, 324
BstMBI	GATC	5 cut(s)	349, 400, 413, 430, 923
BstMWI	GCNNNNNNNGC	5 cut(s)	82, 368, 377, 809, 946
BstNI	CCWGG	3 cut(s)	36, 572, 765
BstNSI	RCATGY	2 cut(s)	380, 726
BstSCI	CCNGG	4 cut(s)	34, 277, 570, 763
BstSLI	GKGCMC	1 cut(s)	764
BstUI	CGCG	2 cut(s)	270, 338
BstV1I	GCAGC	1 cut(s)	569
BsuI	GTATCC	2 cut(s)	188, 823
BsuRI	GGCC	1 cut(s)	718
BtsCI	GGATG	1 cut(s)	396
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	2 cut(s)	378, 838
CfoI	GCGC	4 cut(s)	100, 382, 462, 853
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	1 cut(s)	716
Csp6I	GTAC	2 cut(s)	620, 726
CviAII	CATG	6 cut(s)	377, 596, 643, 687, 723, 904
CviQI	GTAC	2 cut(s)	620, 726
DdeI	CTNAG	6 cut(s)	108, 229, 321, 346, 490, 854
DinI	GGCGCC	1 cut(s)	99
DpnI	GATC	5 cut(s)	351, 402, 415, 432, 925
DpnII	GATC	5 cut(s)	349, 400, 413, 430, 923
Eam1104I	CTCTTC	2 cut(s)	269, 889
EarI	CTCTTC	2 cut(s)	269, 889
Ecl136II	GAGCTC	2 cut(s)	202, 803
Eco24I	GRGCYC	2 cut(s)	204, 805
Eco31I	GGTCTC	1 cut(s)	230
Eco47III	AGCGCT	2 cut(s)	461, 852
Eco53kI	GAGCTC	2 cut(s)	202, 803
Eco57I	CTGAAG	1 cut(s)	639
Eco72I	CACGTG	1 cut(s)	567
EcoICRI	GAGCTC	2 cut(s)	202, 803
EcoRI	GAATTC	1 cut(s)	581
EcoRII	CCWGG	3 cut(s)	34, 570, 763
EcoT22I	ATGCAT	1 cut(s)	378
EcoT38I	GRGCYC	2 cut(s)	204, 805
EgeI	GGCGCC	1 cut(s)	99
EheI	GGCGCC	1 cut(s)	99
FaeI	CATG	6 cut(s)	380, 599, 646, 690, 726, 907
FatI	CATG	6 cut(s)	376, 595, 642, 686, 722, 903
FauI	CCCGC	2 cut(s)	24, 78
FauNDI	CATATG	1 cut(s)	796
Fnu4HI	GCNGC	3 cut(s)	6, 74, 558
FokI	GGATG	1 cut(s)	403
FriOI	GRGCYC	2 cut(s)	204, 805
Fsp4HI	GCNGC	3 cut(s)	6, 74, 558
FspBI	CTAG	5 cut(s)	434, 450, 486, 504, 522
GlaI	GCGC	4 cut(s)	99, 381, 461, 852
GluI	GCNGC	3 cut(s)	6, 74, 558
GsuI	CTGGAG	2 cut(s)	789, 867
HaeII	RGCGCY	3 cut(s)	101, 463, 854
HaeIII	GGCC	1 cut(s)	718
HapII	CCGG	3 cut(s)	222, 278, 312
HhaI	GCGC	4 cut(s)	100, 382, 462, 853
Hin1I	GRCGYC	1 cut(s)	98
Hin1II	CATG	6 cut(s)	380, 599, 646, 690, 726, 907
Hin6I	GCGC	4 cut(s)	98, 380, 460, 851
HinP1I	GCGC	4 cut(s)	98, 380, 460, 851
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	3 cut(s)	287, 536, 856
HpaII	CCGG	3 cut(s)	222, 278, 312
Hpy166II	GTNNAC	2 cut(s)	46, 622
Hpy188I	TCNGA	4 cut(s)	206, 232, 302, 493
Hpy188III	TCNNGA	5 cut(s)	404, 465, 533, 827, 927
Hpy8I	GTNNAC	2 cut(s)	46, 622
Hpy99I	CGWCG	2 cut(s)	200, 221
HpyAV	CCTTC	2 cut(s)	403, 893
HpyCH4IV	ACGT	2 cut(s)	165, 566
HpyCH4V	TGCA	3 cut(s)	376, 787, 865
HpyF10VI	GCNNNNNNNGC	5 cut(s)	82, 368, 377, 809, 946
HpyF3I	CTNAG	6 cut(s)	108, 229, 321, 346, 490, 854
HpySE526I	ACGT	2 cut(s)	165, 566
Hsp92I	GRCGYC	1 cut(s)	98
Hsp92II	CATG	6 cut(s)	380, 599, 646, 690, 726, 907
HspAI	GCGC	4 cut(s)	98, 380, 460, 851
KasI	GGCGCC	1 cut(s)	97
Kzo9I	GATC	5 cut(s)	349, 400, 413, 430, 923
LmnI	GCTCC	6 cut(s)	207, 368, 730, 800, 808, 848
Lsp1109I	GCAGC	1 cut(s)	569
LweI	GCATC	1 cut(s)	774
MaeI	CTAG	5 cut(s)	434, 450, 486, 504, 522
MaeII	ACGT	2 cut(s)	165, 566
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	5 cut(s)	351, 402, 415, 432, 925
MboI	GATC	5 cut(s)	349, 400, 413, 430, 923
MboII	GAAGA	5 cut(s)	245, 256, 645, 793, 876
MhlI	GDGCHC	3 cut(s)	204, 764, 805
MluCI	AATT	6 cut(s)	419, 445, 581, 649, 741, 776
Mly113I	GGCGCC	1 cut(s)	98
MlyI	GAGTC	1 cut(s)	865
MmeI	TCCRAC	1 cut(s)	716
Mph1103I	ATGCAT	1 cut(s)	378
MslI	CAYNNNNRTG	1 cut(s)	565
MspI	CCGG	3 cut(s)	222, 278, 312
MspR9I	CCNGG	4 cut(s)	36, 279, 572, 765
Mva1269I	GAATGC	2 cut(s)	560, 942
MvaI	CCWGG	3 cut(s)	36, 572, 765
MvnI	CGCG	2 cut(s)	270, 338
MwoI	GCNNNNNNNGC	5 cut(s)	82, 368, 377, 809, 946
NarI	GGCGCC	1 cut(s)	98
NciI	CCSGG	1 cut(s)	279
NdeI	CATATG	1 cut(s)	796
NdeII	GATC	5 cut(s)	349, 400, 413, 430, 923
NlaIII	CATG	6 cut(s)	380, 599, 646, 690, 726, 907
NlaIV	GGNNCC	3 cut(s)	99, 717, 761
NsiI	ATGCAT	1 cut(s)	378
NspI	RCATGY	2 cut(s)	380, 726
PaeI	GCATGC	1 cut(s)	380
PasI	CCCWGGG	1 cut(s)	764
PciI	ACATGT	1 cut(s)	722
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PctI	GAATGC	2 cut(s)	560, 942
PfeI	GAWTC	2 cut(s)	287, 536
PkrI	GCNGC	3 cut(s)	7, 75, 559
PleI	GAGTC	1 cut(s)	864
PluTI	GGCGCC	1 cut(s)	101
PmaCI	CACGTG	1 cut(s)	567
PmlI	CACGTG	1 cut(s)	567
PpsI	GAGTC	1 cut(s)	864
Ppu21I	YACGTR	1 cut(s)	567
PscI	ACATGT	1 cut(s)	722
Psp124BI	GAGCTC	2 cut(s)	204, 805
Psp6I	CCWGG	3 cut(s)	34, 570, 763
PspCI	CACGTG	1 cut(s)	567
PspGI	CCWGG	3 cut(s)	34, 570, 763
PspN4I	GGNNCC	3 cut(s)	99, 717, 761
PspPI	GGNCC	1 cut(s)	716
RsaI	GTAC	2 cut(s)	621, 727
RsaNI	GTAC	2 cut(s)	620, 726
RseI	CAYNNNNRTG	1 cut(s)	565
SacI	GAGCTC	2 cut(s)	204, 805
SatI	GCNGC	3 cut(s)	6, 74, 558
Sau3AI	GATC	5 cut(s)	349, 400, 413, 430, 923
Sau96I	GGNCC	1 cut(s)	716
SchI	GAGTC	1 cut(s)	865
ScrFI	CCNGG	4 cut(s)	36, 279, 572, 765
SduI	GDGCHC	3 cut(s)	204, 764, 805
SfaNI	GCATC	1 cut(s)	774
SfoI	GGCGCC	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	565
SmlI	CTYRAG	2 cut(s)	404, 463
SmoI	CTYRAG	2 cut(s)	404, 463
SphI	GCATGC	1 cut(s)	380
Sse9I	AATT	6 cut(s)	419, 445, 581, 649, 741, 776
SsiI	CCGC	8 cut(s)	17, 23, 71, 74, 83, 104, 268, 338
SspDI	GGCGCC	1 cut(s)	97
SspMI	CTAG	5 cut(s)	434, 450, 486, 504, 522
SstI	GAGCTC	2 cut(s)	204, 805
StyD4I	CCNGG	4 cut(s)	34, 277, 570, 763
TaiI	ACGT	2 cut(s)	168, 569
TaqI	TCGA	1 cut(s)	249
TasI	AATT	6 cut(s)	419, 445, 581, 649, 741, 776
TatI	WGTACW	1 cut(s)	619
TauI	GCSGC	1 cut(s)	76
TfiI	GAWTC	2 cut(s)	287, 536
TscAI	CASTG	1 cut(s)	96
TseI	GCWGC	2 cut(s)	5, 557
TspDTI	ATGAA	3 cut(s)	492, 659, 760
TspGWI	ACGGA	1 cut(s)	743
TspRI	CASTG	1 cut(s)	96
XapI	RAATTY	1 cut(s)	581
XceI	RCATGY	2 cut(s)	380, 726
XcmI	CCANNNNNNNNNTGG	1 cut(s)	928
XspI	CTAG	5 cut(s)	434, 450, 486, 504, 522
Zsp2I	ATGCAT	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.