RNA recognition motif
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G42240 AT2G42240 AT2G42240 |
| fragaria_vesca | FvH4_1g16380 FvH4_1g16380 |
| malus_domestica | MD02G1176300.v1.1 MD15G1286700.v1.1 |
| prunus_persica | Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 |
| pyrus_communis | pycom02g14250 pycom15g25000 |
| rosa_chinensis | RchiOBHm_Chr2g0106251 |
| rosa_laevigata | RLG00000017483 |
| rosa_multiflora | Rmu_sc0008603.1_g000013 |
| rosa_roxburghii | Rroxscaffold_2G00137330 |
| rosa_rugosa | Rorug02G0133700 Rorug02G0133800 |
| rosa_samantha | Rh2AG184900 Rh2BG195200 Rh2CG190000 Rh2DG191100 |
| rosa_wichuraiana | Rw2G014440 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 821 |
| AarI | CACCTGC | 1 cut(s) | 557 |
| Acc36I | ACCTGC | 1 cut(s) | 557 |
| AccB1I | GGYRCC | 1 cut(s) | 807 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 139, 644 |
| AccII | CGCG | 2 cut(s) | 191, 294 |
| AccIII | TCCGGA | 1 cut(s) | 228 |
| AclWI | GGATC | 1 cut(s) | 554 |
| AcoI | YGGCCR | 2 cut(s) | 12, 243 |
| AcuI | CTGAAG | 2 cut(s) | 637, 687 |
| AfaI | GTAC | 1 cut(s) | 775 |
| AfeI | AGCGCT | 1 cut(s) | 485 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 44, 139, 241, 596, 644 |
| AgsI | TTSAA | 3 cut(s) | 546, 794, 829 |
| AjnI | CCWGG | 4 cut(s) | 43, 207, 589, 811 |
| AluBI | AGCT | 4 cut(s) | 527, 651, 787, 888 |
| AluI | AGCT | 4 cut(s) | 527, 651, 787, 888 |
| Alw21I | GWGCWC | 2 cut(s) | 57, 842 |
| Alw26I | GTCTC | 1 cut(s) | 208 |
| Alw44I | GTGCAC | 1 cut(s) | 53 |
| AlwI | GGATC | 1 cut(s) | 554 |
| Aor13HI | TCCGGA | 1 cut(s) | 228 |
| Aor51HI | AGCGCT | 1 cut(s) | 485 |
| AoxI | GGCC | 6 cut(s) | 12, 102, 243, 247, 549, 764 |
| ApaLI | GTGCAC | 1 cut(s) | 53 |
| ApeKI | GCWGC | 4 cut(s) | 118, 212, 576, 648 |
| AspLEI | GCGC | 3 cut(s) | 193, 486, 899 |
| AspS9I | GGNCC | 7 cut(s) | 103, 226, 231, 373, 477, 549, 764 |
| AsuC2I | CCSGG | 1 cut(s) | 303 |
| AsuHPI | GGTGA | 1 cut(s) | 311 |
| AsuNHI | GCTAGC | 1 cut(s) | 884 |
| AvaII | GGWCC | 4 cut(s) | 226, 231, 373, 477 |
| BaeGI | GKGCMC | 3 cut(s) | 57, 812, 920 |
| BanI | GGYRCC | 1 cut(s) | 807 |
| BanII | GRGCYC | 1 cut(s) | 853 |
| Bbv12I | GWGCWC | 2 cut(s) | 57, 842 |
| BbvCI | CCTCAGC | 1 cut(s) | 171 |
| BbvI | GCAGC | 4 cut(s) | 130, 224, 588, 660 |
| BccI | CCATC | 3 cut(s) | 4, 409, 637 |
| BciT130I | CCWGG | 4 cut(s) | 45, 209, 591, 813 |
| BciVI | GTATCC | 1 cut(s) | 871 |
| BcnI | CCSGG | 1 cut(s) | 303 |
| BcoDI | GTCTC | 1 cut(s) | 208 |
| BfaI | CTAG | 4 cut(s) | 458, 474, 528, 885 |
| BfmI | CTRYAG | 2 cut(s) | 564, 911 |
| BfoI | RGCGCY | 1 cut(s) | 487 |
| BfuAI | ACCTGC | 1 cut(s) | 557 |
| BfuI | GTATCC | 1 cut(s) | 871 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 101 |
| BglII | AGATCT | 2 cut(s) | 454, 506 |
| BisI | GCNGC | 8 cut(s) | 15, 113, 116, 119, 194, 213, 577, 649 |
| BlsI | GCNGC | 8 cut(s) | 16, 114, 117, 120, 195, 214, 578, 650 |
| Bme1390I | CCNGG | 5 cut(s) | 45, 209, 303, 591, 813 |
| Bme18I | GGWCC | 4 cut(s) | 226, 231, 373, 477 |
| BmgT120I | GGNCC | 7 cut(s) | 103, 226, 231, 373, 477, 549, 764 |
| BmiI | GGNNCC | 6 cut(s) | 49, 105, 233, 765, 809, 852 |
| BmrFI | CCNGG | 5 cut(s) | 45, 209, 303, 591, 813 |
| BmrI | ACTGGG | 1 cut(s) | 911 |
| BmsI | GCATC | 1 cut(s) | 822 |
| BmtI | GCTAGC | 1 cut(s) | 888 |
| BmuI | ACTGGG | 1 cut(s) | 911 |
| BpmI | CTGGAG | 2 cut(s) | 837, 963 |
| Bpu10I | CCTNAGC | 1 cut(s) | 171 |
| BpuEI | CTTGAG | 2 cut(s) | 449, 472 |
| BpuMI | CCSGG | 1 cut(s) | 303 |
| BsaJI | CCNNGG | 4 cut(s) | 99, 207, 811, 812 |
| BsaWI | WCCGGW | 1 cut(s) | 228 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 44, 139, 241, 596, 644 |
| Bse118I | RCCGGY | 1 cut(s) | 245 |
| Bse1I | ACTGG | 3 cut(s) | 854, 898, 906 |
| Bse3DI | GCAATG | 1 cut(s) | 402 |
| BseAI | TCCGGA | 1 cut(s) | 228 |
| BseBI | CCWGG | 4 cut(s) | 45, 209, 591, 813 |
| BseDI | CCNNGG | 4 cut(s) | 99, 207, 811, 812 |
| BseGI | GGATG | 1 cut(s) | 420 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 44, 139, 241, 596, 644 |
| BseMI | GCAATG | 1 cut(s) | 402 |
| BseMII | CTCAG | 2 cut(s) | 185, 359 |
| BseNI | ACTGG | 3 cut(s) | 854, 898, 906 |
| BseSI | GKGCMC | 3 cut(s) | 57, 812, 920 |
| BseXI | GCAGC | 4 cut(s) | 130, 224, 588, 660 |
| BseYI | CCCAGC | 1 cut(s) | 165 |
| BsgI | GTGCAG | 1 cut(s) | 618 |
| Bsh1236I | CGCG | 2 cut(s) | 191, 294 |
| Bsh1285I | CGRYCG | 1 cut(s) | 390 |
| BshFI | GGCC | 6 cut(s) | 14, 104, 245, 249, 551, 766 |
| BshNI | GGYRCC | 1 cut(s) | 807 |
| BsiEI | CGRYCG | 1 cut(s) | 390 |
| BsiHKAI | GWGCWC | 2 cut(s) | 57, 842 |
| BsiSI | CCGG | 3 cut(s) | 229, 246, 303 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 44, 139, 241, 596, 644 |
| BsmAI | GTCTC | 1 cut(s) | 208 |
| BsmBI | CGTCTC | 1 cut(s) | 208 |
| BsmI | GAATGC | 2 cut(s) | 579, 990 |
| BsnI | GGCC | 6 cut(s) | 14, 104, 245, 249, 551, 766 |
| Bsp1286I | GDGCHC | 5 cut(s) | 57, 812, 842, 853, 920 |
| Bsp13I | TCCGGA | 1 cut(s) | 228 |
| Bsp143I | GATC | 5 cut(s) | 387, 424, 454, 506, 559 |
| BspANI | GGCC | 6 cut(s) | 14, 104, 245, 249, 551, 766 |
| BspCNI | CTCAG | 2 cut(s) | 184, 358 |
| BspEI | TCCGGA | 1 cut(s) | 228 |
| BspFNI | CGCG | 2 cut(s) | 191, 294 |
| BspLI | GGNNCC | 6 cut(s) | 49, 105, 233, 765, 809, 852 |
| BspMAI | CTGCAG | 2 cut(s) | 568, 915 |
| BspMI | ACCTGC | 1 cut(s) | 557 |
| BspOI | GCTAGC | 1 cut(s) | 888 |
| BspPI | GGATC | 1 cut(s) | 554 |
| BspT107I | GGYRCC | 1 cut(s) | 807 |
| BsrDI | GCAATG | 1 cut(s) | 402 |
| BsrFI | RCCGGY | 1 cut(s) | 245 |
| BsrI | ACTGG | 3 cut(s) | 854, 898, 906 |
| BssAI | RCCGGY | 1 cut(s) | 245 |
| BssECI | CCNNGG | 4 cut(s) | 99, 207, 811, 812 |
| BssMI | GATC | 5 cut(s) | 387, 424, 454, 506, 559 |
| Bst2UI | CCWGG | 4 cut(s) | 45, 209, 591, 813 |
| Bst6I | CTCTTC | 2 cut(s) | 242, 293 |
| BstC8I | GCNNGC | 4 cut(s) | 93, 247, 402, 886 |
| BstDEI | CTNAG | 2 cut(s) | 171, 345 |
| BstDSI | CCRYGG | 1 cut(s) | 99 |
| BstF5I | GGATG | 1 cut(s) | 420 |
| BstFNI | CGCG | 2 cut(s) | 191, 294 |
| BstH2I | RGCGCY | 1 cut(s) | 487 |
| BstHHI | GCGC | 3 cut(s) | 193, 486, 899 |
| BstKTI | GATC | 5 cut(s) | 390, 427, 457, 509, 562 |
| BstMAI | GTCTC | 1 cut(s) | 208 |
| BstMBI | GATC | 5 cut(s) | 387, 424, 454, 506, 559 |
| BstMCI | CGRYCG | 1 cut(s) | 390 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 101, 118, 188, 392, 401, 657, 857, 894, 994 |
| BstNI | CCWGG | 4 cut(s) | 45, 209, 591, 813 |
| BstNSI | RCATGY | 1 cut(s) | 589 |
| BstSCI | CCNGG | 5 cut(s) | 43, 207, 301, 589, 811 |
| BstSFI | CTRYAG | 2 cut(s) | 564, 911 |
| BstSLI | GKGCMC | 3 cut(s) | 57, 812, 920 |
| BstUI | CGCG | 2 cut(s) | 191, 294 |
| BstV1I | GCAGC | 4 cut(s) | 130, 224, 588, 660 |
| BstX2I | RGATCY | 2 cut(s) | 454, 506 |
| BstYI | RGATCY | 2 cut(s) | 454, 506 |
| BsuI | GTATCC | 1 cut(s) | 871 |
| BsuRI | GGCC | 6 cut(s) | 14, 104, 245, 249, 551, 766 |
| BtgI | CCRYGG | 1 cut(s) | 99 |
| BtsCI | GGATG | 1 cut(s) | 420 |
| BtsI | GCAGTG | 1 cut(s) | 667 |
| BtsIMutI | CAGTG | 4 cut(s) | 404, 661, 667, 899 |
| BveI | ACCTGC | 1 cut(s) | 557 |
| Cac8I | GCNNGC | 4 cut(s) | 93, 247, 402, 886 |
| CfoI | GCGC | 3 cut(s) | 193, 486, 899 |
| Cfr10I | RCCGGY | 1 cut(s) | 245 |
| Cfr13I | GGNCC | 7 cut(s) | 103, 226, 231, 373, 477, 549, 764 |
| Csp6I | GTAC | 1 cut(s) | 774 |
| CviAII | CATG | 6 cut(s) | 586, 616, 644, 691, 735, 952 |
| CviQI | GTAC | 1 cut(s) | 774 |
| DdeI | CTNAG | 2 cut(s) | 171, 345 |
| DpnI | GATC | 5 cut(s) | 389, 426, 456, 508, 561 |
| DpnII | GATC | 5 cut(s) | 387, 424, 454, 506, 559 |
| EaeI | YGGCCR | 2 cut(s) | 12, 243 |
| Eam1104I | CTCTTC | 2 cut(s) | 242, 293 |
| EarI | CTCTTC | 2 cut(s) | 242, 293 |
| EciI | GGCGGA | 2 cut(s) | 27, 99 |
| Eco24I | GRGCYC | 1 cut(s) | 853 |
| Eco47I | GGWCC | 4 cut(s) | 226, 231, 373, 477 |
| Eco47III | AGCGCT | 1 cut(s) | 485 |
| Eco57I | CTGAAG | 2 cut(s) | 637, 687 |
| EcoRII | CCWGG | 4 cut(s) | 43, 207, 589, 811 |
| EcoT38I | GRGCYC | 1 cut(s) | 853 |
| Esp3I | CGTCTC | 1 cut(s) | 208 |
| FaeI | CATG | 6 cut(s) | 589, 619, 647, 694, 738, 955 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 538, 570 |
| FatI | CATG | 6 cut(s) | 585, 615, 643, 690, 734, 951 |
| FauNDI | CATATG | 1 cut(s) | 844 |
| Fnu4HI | GCNGC | 8 cut(s) | 15, 113, 116, 119, 194, 213, 577, 649 |
| FokI | GGATG | 1 cut(s) | 427 |
| FriOI | GRGCYC | 1 cut(s) | 853 |
| FseI | GGCCGGCC | 1 cut(s) | 249 |
| Fsp4HI | GCNGC | 8 cut(s) | 15, 113, 116, 119, 194, 213, 577, 649 |
| FspBI | CTAG | 4 cut(s) | 458, 474, 528, 885 |
| GlaI | GCGC | 3 cut(s) | 192, 485, 898 |
| GluI | GCNGC | 8 cut(s) | 15, 113, 116, 119, 194, 213, 577, 649 |
| GsaI | CCCAGC | 1 cut(s) | 169 |
| GsuI | CTGGAG | 2 cut(s) | 837, 963 |
| HaeII | RGCGCY | 1 cut(s) | 487 |
| HaeIII | GGCC | 6 cut(s) | 14, 104, 245, 249, 551, 766 |
| HapII | CCGG | 3 cut(s) | 229, 246, 303 |
| HhaI | GCGC | 3 cut(s) | 193, 486, 899 |
| Hin1II | CATG | 6 cut(s) | 589, 619, 647, 694, 738, 955 |
| Hin6I | GCGC | 3 cut(s) | 191, 484, 897 |
| HinP1I | GCGC | 3 cut(s) | 191, 484, 897 |
| HincII | GTYRAC | 1 cut(s) | 936 |
| HindII | GTYRAC | 1 cut(s) | 936 |
| HinfI | GANTC | 1 cut(s) | 311 |
| HpaII | CCGG | 3 cut(s) | 229, 246, 303 |
| HphI | GGTGA | 1 cut(s) | 311 |
| Hpy166II | GTNNAC | 3 cut(s) | 55, 670, 936 |
| Hpy188I | TCNGA | 4 cut(s) | 326, 392, 517, 559 |
| Hpy188III | TCNNGA | 6 cut(s) | 229, 428, 489, 875, 942, 975 |
| Hpy8I | GTNNAC | 3 cut(s) | 55, 670, 936 |
| Hpy99I | CGWCG | 1 cut(s) | 224 |
| HpyAV | CCTTC | 1 cut(s) | 427 |
| HpyCH4V | TGCA | 7 cut(s) | 55, 400, 566, 635, 835, 860, 913 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 101, 118, 188, 392, 401, 657, 857, 894, 994 |
| HpyF3I | CTNAG | 2 cut(s) | 171, 345 |
| Hsp92II | CATG | 6 cut(s) | 589, 619, 647, 694, 738, 955 |
| HspAI | GCGC | 3 cut(s) | 191, 484, 897 |
| Kpn2I | TCCGGA | 1 cut(s) | 228 |
| KroI | GCCGGC | 1 cut(s) | 245 |
| KroNI | GCCGGC | 1 cut(s) | 247 |
| Kzo9I | GATC | 5 cut(s) | 387, 424, 454, 506, 559 |
| LmnI | GCTCC | 5 cut(s) | 53, 187, 392, 778, 856 |
| Lsp1109I | GCAGC | 4 cut(s) | 130, 224, 588, 660 |
| LweI | GCATC | 1 cut(s) | 822 |
| MaeI | CTAG | 4 cut(s) | 458, 474, 528, 885 |
| MaeIII | GTNAC | 1 cut(s) | 305 |
| MalI | GATC | 5 cut(s) | 389, 426, 456, 508, 561 |
| MboI | GATC | 5 cut(s) | 387, 424, 454, 506, 559 |
| MboII | GAAGA | 6 cut(s) | 229, 269, 280, 693, 841, 1003 |
| MflI | RGATCY | 2 cut(s) | 454, 506 |
| MhlI | GDGCHC | 5 cut(s) | 57, 812, 842, 853, 920 |
| MluCI | AATT | 6 cut(s) | 469, 601, 757, 789, 824, 921 |
| MlyI | GAGTC | 1 cut(s) | 320 |
| MroI | TCCGGA | 1 cut(s) | 228 |
| MroNI | GCCGGC | 1 cut(s) | 245 |
| MslI | CAYNNNNRTG | 1 cut(s) | 584 |
| MspI | CCGG | 3 cut(s) | 229, 246, 303 |
| MspR9I | CCNGG | 5 cut(s) | 45, 209, 303, 591, 813 |
| Mva1269I | GAATGC | 2 cut(s) | 579, 990 |
| MvaI | CCWGG | 4 cut(s) | 45, 209, 591, 813 |
| MvnI | CGCG | 2 cut(s) | 191, 294 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 101, 118, 188, 392, 401, 657, 857, 894, 994 |
| NaeI | GCCGGC | 1 cut(s) | 247 |
| NciI | CCSGG | 1 cut(s) | 303 |
| NdeI | CATATG | 1 cut(s) | 844 |
| NdeII | GATC | 5 cut(s) | 387, 424, 454, 506, 559 |
| NgoMIV | GCCGGC | 1 cut(s) | 245 |
| NheI | GCTAGC | 1 cut(s) | 884 |
| NlaIII | CATG | 6 cut(s) | 589, 619, 647, 694, 738, 955 |
| NlaIV | GGNNCC | 6 cut(s) | 49, 105, 233, 765, 809, 852 |
| NspI | RCATGY | 1 cut(s) | 589 |
| PaqCI | CACCTGC | 1 cut(s) | 557 |
| PasI | CCCWGGG | 1 cut(s) | 812 |
| PctI | GAATGC | 2 cut(s) | 579, 990 |
| PdiI | GCCGGC | 1 cut(s) | 247 |
| PflFI | GACNNNGTC | 1 cut(s) | 224 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 139, 644 |
| PkrI | GCNGC | 8 cut(s) | 16, 114, 117, 120, 195, 214, 578, 650 |
| Ple19I | CGATCG | 1 cut(s) | 390 |
| PleI | GAGTC | 1 cut(s) | 319 |
| PpsI | GAGTC | 1 cut(s) | 319 |
| PsiI | TTATAA | 1 cut(s) | 821 |
| Psp6I | CCWGG | 4 cut(s) | 43, 207, 589, 811 |
| PspFI | CCCAGC | 1 cut(s) | 165 |
| PspGI | CCWGG | 4 cut(s) | 43, 207, 589, 811 |
| PspN4I | GGNNCC | 6 cut(s) | 49, 105, 233, 765, 809, 852 |
| PspPI | GGNCC | 7 cut(s) | 103, 226, 231, 373, 477, 549, 764 |
| PstI | CTGCAG | 2 cut(s) | 568, 915 |
| PsuI | RGATCY | 2 cut(s) | 454, 506 |
| PsyI | GACNNNGTC | 1 cut(s) | 224 |
| PvuI | CGATCG | 1 cut(s) | 390 |
| RigI | GGCCGGCC | 1 cut(s) | 249 |
| RsaI | GTAC | 1 cut(s) | 775 |
| RsaNI | GTAC | 1 cut(s) | 774 |
| RseI | CAYNNNNRTG | 1 cut(s) | 584 |
| SatI | GCNGC | 8 cut(s) | 15, 113, 116, 119, 194, 213, 577, 649 |
| Sau3AI | GATC | 5 cut(s) | 387, 424, 454, 506, 559 |
| Sau96I | GGNCC | 7 cut(s) | 103, 226, 231, 373, 477, 549, 764 |
| SbfI | CCTGCAGG | 1 cut(s) | 568 |
| SchI | GAGTC | 1 cut(s) | 320 |
| ScrFI | CCNGG | 5 cut(s) | 45, 209, 303, 591, 813 |
| SdaI | CCTGCAGG | 1 cut(s) | 568 |
| SduI | GDGCHC | 5 cut(s) | 57, 812, 842, 853, 920 |
| SfaNI | GCATC | 1 cut(s) | 822 |
| SfcI | CTRYAG | 2 cut(s) | 564, 911 |
| SinI | GGWCC | 4 cut(s) | 226, 231, 373, 477 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 584 |
| SmlI | CTYRAG | 2 cut(s) | 428, 487 |
| SmoI | CTYRAG | 2 cut(s) | 428, 487 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 568 |
| Sse9I | AATT | 6 cut(s) | 469, 601, 757, 789, 824, 921 |
| SspMI | CTAG | 4 cut(s) | 458, 474, 528, 885 |
| StyD4I | CCNGG | 5 cut(s) | 43, 207, 301, 589, 811 |
| TaqI | TCGA | 2 cut(s) | 440, 803 |
| TasI | AATT | 6 cut(s) | 469, 601, 757, 789, 824, 921 |
| TauI | GCSGC | 4 cut(s) | 17, 115, 118, 196 |
| TscAI | CASTG | 4 cut(s) | 411, 661, 667, 906 |
| TseI | GCWGC | 4 cut(s) | 118, 212, 576, 648 |
| TspDTI | ATGAA | 4 cut(s) | 134, 516, 525, 707 |
| TspGWI | ACGGA | 2 cut(s) | 40, 791 |
| TspRI | CASTG | 4 cut(s) | 411, 661, 667, 906 |
| Tth111I | GACNNNGTC | 1 cut(s) | 224 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 139, 644 |
| VneI | GTGCAC | 1 cut(s) | 53 |
| VpaK11BI | GGWCC | 4 cut(s) | 226, 231, 373, 477 |
| XceI | RCATGY | 1 cut(s) | 589 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 976 |
| XspI | CTAG | 4 cut(s) | 458, 474, 528, 885 |