Rroxscaffold_2G00137330

RNA recognition motif

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
75069393 .. 75072756
3364 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00137330.1

Sequence Viewer

Length: 1005 bp
ATGGACGAGATGGCCGCCTATTACCCTCCACCGCCTCCGCCACCAGGCTCCGTGCACTATCCATACTACCACCACCAGCCACCTCAACCGCCTGCCCCCGTGGCCCCTCCGCCGCCGCAGCACCACCACCACCACCACTTGGTTCATCAGCCCTACTACCCTCCCCAGCCTCAGCCTTACGCTCCCTACGCGCCGCCACTCGTCTCCCAGGCAGCCTACGACGAGGTCCGGACCCTCTTCGTGGCCGGCCTACCCGAAGATGTCAAGCCCCGTGAAATCTACAACCTCTTCCGCGAGTTTCCCGGTTACGAGTCCTCTCACCTCCGAACCCCCACCGAGAAAACTCAGCCTTTTGCGTTTGCGGTGTTCTTGGACCAGCAATCTGCGATCGGAGCAATGCAAGCACTGAATGGGATGGTATTTGATCTTGAGAAGGGTTCGACATTATATATAGATCTAGCAAAATCTAATTCTAGGTCCAAGCGCTCAAGAACAGATGATGAAAGATCTGGCTCGGATAAGAAAGCTAGAGGTTCATCATATTCAAGGGCCACTTCTGATCCTGCAGGTGTTGGCAGCATTCACATGCCTGGAATGGGTAATTCTGCTTACAACATGATTGGTTATCCATCTGCACCAAGTCATGGCAGCTTCAGTGGCAGTGGTGTAAACGAGCCAATAGCCTCAAACATGAATAGTTCTTCAGCACAACATTTTCCACAAAACAATACTCCATGCCCAACACTTTTTGTGGCTAATTTGGGGCCAACTTGTACGGAGCAAGAGCTAATTCAAGTATTTTCGAGGTGCCCTGGGTTTATAAAATTGAAGATGCAGAGCACATATGGGGCTCCAGTTGCATTTGTTGATTTTCAGGATACTGCTAGCTCAACTGGCGCACTGGGTCATCTGCAGGGCACAATTCTCTATTCGTCAACATCTGGAGAGGGCATGAGATTAGAGTTTGCCAAATCACGAATGGGAATGCGGAAGAAGCCGAAGTAA

Protein Analysis

334

Amino Acids

36.52

Weight (kDa)

7.8

Isoelectric Point (pI)

58.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 79 - 142 1.3e-11 RNA recognition motif
RRM_1 PF00076 249 - 312 9.3e-09 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 821
AarI CACCTGC 1 cut(s) 557
Acc36I ACCTGC 1 cut(s) 557
AccB1I GGYRCC 1 cut(s) 807
AccB7I CCANNNNNTGG 2 cut(s) 139, 644
AccII CGCG 2 cut(s) 191, 294
AccIII TCCGGA 1 cut(s) 228
AclWI GGATC 1 cut(s) 554
AcoI YGGCCR 2 cut(s) 12, 243
AcuI CTGAAG 2 cut(s) 637, 687
AfaI GTAC 1 cut(s) 775
AfeI AGCGCT 1 cut(s) 485
AfiI CCNNNNNNNGG 5 cut(s) 44, 139, 241, 596, 644
AgsI TTSAA 3 cut(s) 546, 794, 829
AjnI CCWGG 4 cut(s) 43, 207, 589, 811
AluBI AGCT 4 cut(s) 527, 651, 787, 888
AluI AGCT 4 cut(s) 527, 651, 787, 888
Alw21I GWGCWC 2 cut(s) 57, 842
Alw26I GTCTC 1 cut(s) 208
Alw44I GTGCAC 1 cut(s) 53
AlwI GGATC 1 cut(s) 554
Aor13HI TCCGGA 1 cut(s) 228
Aor51HI AGCGCT 1 cut(s) 485
AoxI GGCC 6 cut(s) 12, 102, 243, 247, 549, 764
ApaLI GTGCAC 1 cut(s) 53
ApeKI GCWGC 4 cut(s) 118, 212, 576, 648
AspLEI GCGC 3 cut(s) 193, 486, 899
AspS9I GGNCC 7 cut(s) 103, 226, 231, 373, 477, 549, 764
AsuC2I CCSGG 1 cut(s) 303
AsuHPI GGTGA 1 cut(s) 311
AsuNHI GCTAGC 1 cut(s) 884
AvaII GGWCC 4 cut(s) 226, 231, 373, 477
BaeGI GKGCMC 3 cut(s) 57, 812, 920
BanI GGYRCC 1 cut(s) 807
BanII GRGCYC 1 cut(s) 853
Bbv12I GWGCWC 2 cut(s) 57, 842
BbvCI CCTCAGC 1 cut(s) 171
BbvI GCAGC 4 cut(s) 130, 224, 588, 660
BccI CCATC 3 cut(s) 4, 409, 637
BciT130I CCWGG 4 cut(s) 45, 209, 591, 813
BciVI GTATCC 1 cut(s) 871
BcnI CCSGG 1 cut(s) 303
BcoDI GTCTC 1 cut(s) 208
BfaI CTAG 4 cut(s) 458, 474, 528, 885
BfmI CTRYAG 2 cut(s) 564, 911
BfoI RGCGCY 1 cut(s) 487
BfuAI ACCTGC 1 cut(s) 557
BfuI GTATCC 1 cut(s) 871
BglI GCCNNNNNGGC 1 cut(s) 101
BglII AGATCT 2 cut(s) 454, 506
BisI GCNGC 8 cut(s) 15, 113, 116, 119, 194, 213, 577, 649
BlsI GCNGC 8 cut(s) 16, 114, 117, 120, 195, 214, 578, 650
Bme1390I CCNGG 5 cut(s) 45, 209, 303, 591, 813
Bme18I GGWCC 4 cut(s) 226, 231, 373, 477
BmgT120I GGNCC 7 cut(s) 103, 226, 231, 373, 477, 549, 764
BmiI GGNNCC 6 cut(s) 49, 105, 233, 765, 809, 852
BmrFI CCNGG 5 cut(s) 45, 209, 303, 591, 813
BmrI ACTGGG 1 cut(s) 911
BmsI GCATC 1 cut(s) 822
BmtI GCTAGC 1 cut(s) 888
BmuI ACTGGG 1 cut(s) 911
BpmI CTGGAG 2 cut(s) 837, 963
Bpu10I CCTNAGC 1 cut(s) 171
BpuEI CTTGAG 2 cut(s) 449, 472
BpuMI CCSGG 1 cut(s) 303
BsaJI CCNNGG 4 cut(s) 99, 207, 811, 812
BsaWI WCCGGW 1 cut(s) 228
Bsc4I CCNNNNNNNGG 5 cut(s) 44, 139, 241, 596, 644
Bse118I RCCGGY 1 cut(s) 245
Bse1I ACTGG 3 cut(s) 854, 898, 906
Bse3DI GCAATG 1 cut(s) 402
BseAI TCCGGA 1 cut(s) 228
BseBI CCWGG 4 cut(s) 45, 209, 591, 813
BseDI CCNNGG 4 cut(s) 99, 207, 811, 812
BseGI GGATG 1 cut(s) 420
BseLI CCNNNNNNNGG 5 cut(s) 44, 139, 241, 596, 644
BseMI GCAATG 1 cut(s) 402
BseMII CTCAG 2 cut(s) 185, 359
BseNI ACTGG 3 cut(s) 854, 898, 906
BseSI GKGCMC 3 cut(s) 57, 812, 920
BseXI GCAGC 4 cut(s) 130, 224, 588, 660
BseYI CCCAGC 1 cut(s) 165
BsgI GTGCAG 1 cut(s) 618
Bsh1236I CGCG 2 cut(s) 191, 294
Bsh1285I CGRYCG 1 cut(s) 390
BshFI GGCC 6 cut(s) 14, 104, 245, 249, 551, 766
BshNI GGYRCC 1 cut(s) 807
BsiEI CGRYCG 1 cut(s) 390
BsiHKAI GWGCWC 2 cut(s) 57, 842
BsiSI CCGG 3 cut(s) 229, 246, 303
BslI CCNNNNNNNGG 5 cut(s) 44, 139, 241, 596, 644
BsmAI GTCTC 1 cut(s) 208
BsmBI CGTCTC 1 cut(s) 208
BsmI GAATGC 2 cut(s) 579, 990
BsnI GGCC 6 cut(s) 14, 104, 245, 249, 551, 766
Bsp1286I GDGCHC 5 cut(s) 57, 812, 842, 853, 920
Bsp13I TCCGGA 1 cut(s) 228
Bsp143I GATC 5 cut(s) 387, 424, 454, 506, 559
BspANI GGCC 6 cut(s) 14, 104, 245, 249, 551, 766
BspCNI CTCAG 2 cut(s) 184, 358
BspEI TCCGGA 1 cut(s) 228
BspFNI CGCG 2 cut(s) 191, 294
BspLI GGNNCC 6 cut(s) 49, 105, 233, 765, 809, 852
BspMAI CTGCAG 2 cut(s) 568, 915
BspMI ACCTGC 1 cut(s) 557
BspOI GCTAGC 1 cut(s) 888
BspPI GGATC 1 cut(s) 554
BspT107I GGYRCC 1 cut(s) 807
BsrDI GCAATG 1 cut(s) 402
BsrFI RCCGGY 1 cut(s) 245
BsrI ACTGG 3 cut(s) 854, 898, 906
BssAI RCCGGY 1 cut(s) 245
BssECI CCNNGG 4 cut(s) 99, 207, 811, 812
BssMI GATC 5 cut(s) 387, 424, 454, 506, 559
Bst2UI CCWGG 4 cut(s) 45, 209, 591, 813
Bst6I CTCTTC 2 cut(s) 242, 293
BstC8I GCNNGC 4 cut(s) 93, 247, 402, 886
BstDEI CTNAG 2 cut(s) 171, 345
BstDSI CCRYGG 1 cut(s) 99
BstF5I GGATG 1 cut(s) 420
BstFNI CGCG 2 cut(s) 191, 294
BstH2I RGCGCY 1 cut(s) 487
BstHHI GCGC 3 cut(s) 193, 486, 899
BstKTI GATC 5 cut(s) 390, 427, 457, 509, 562
BstMAI GTCTC 1 cut(s) 208
BstMBI GATC 5 cut(s) 387, 424, 454, 506, 559
BstMCI CGRYCG 1 cut(s) 390
BstMWI GCNNNNNNNGC 9 cut(s) 101, 118, 188, 392, 401, 657, 857, 894, 994
BstNI CCWGG 4 cut(s) 45, 209, 591, 813
BstNSI RCATGY 1 cut(s) 589
BstSCI CCNGG 5 cut(s) 43, 207, 301, 589, 811
BstSFI CTRYAG 2 cut(s) 564, 911
BstSLI GKGCMC 3 cut(s) 57, 812, 920
BstUI CGCG 2 cut(s) 191, 294
BstV1I GCAGC 4 cut(s) 130, 224, 588, 660
BstX2I RGATCY 2 cut(s) 454, 506
BstYI RGATCY 2 cut(s) 454, 506
BsuI GTATCC 1 cut(s) 871
BsuRI GGCC 6 cut(s) 14, 104, 245, 249, 551, 766
BtgI CCRYGG 1 cut(s) 99
BtsCI GGATG 1 cut(s) 420
BtsI GCAGTG 1 cut(s) 667
BtsIMutI CAGTG 4 cut(s) 404, 661, 667, 899
BveI ACCTGC 1 cut(s) 557
Cac8I GCNNGC 4 cut(s) 93, 247, 402, 886
CfoI GCGC 3 cut(s) 193, 486, 899
Cfr10I RCCGGY 1 cut(s) 245
Cfr13I GGNCC 7 cut(s) 103, 226, 231, 373, 477, 549, 764
Csp6I GTAC 1 cut(s) 774
CviAII CATG 6 cut(s) 586, 616, 644, 691, 735, 952
CviQI GTAC 1 cut(s) 774
DdeI CTNAG 2 cut(s) 171, 345
DpnI GATC 5 cut(s) 389, 426, 456, 508, 561
DpnII GATC 5 cut(s) 387, 424, 454, 506, 559
EaeI YGGCCR 2 cut(s) 12, 243
Eam1104I CTCTTC 2 cut(s) 242, 293
EarI CTCTTC 2 cut(s) 242, 293
EciI GGCGGA 2 cut(s) 27, 99
Eco24I GRGCYC 1 cut(s) 853
Eco47I GGWCC 4 cut(s) 226, 231, 373, 477
Eco47III AGCGCT 1 cut(s) 485
Eco57I CTGAAG 2 cut(s) 637, 687
EcoRII CCWGG 4 cut(s) 43, 207, 589, 811
EcoT38I GRGCYC 1 cut(s) 853
Esp3I CGTCTC 1 cut(s) 208
FaeI CATG 6 cut(s) 589, 619, 647, 694, 738, 955
FalI AAGNNNNNCTT 2 cut(s) 538, 570
FatI CATG 6 cut(s) 585, 615, 643, 690, 734, 951
FauNDI CATATG 1 cut(s) 844
Fnu4HI GCNGC 8 cut(s) 15, 113, 116, 119, 194, 213, 577, 649
FokI GGATG 1 cut(s) 427
FriOI GRGCYC 1 cut(s) 853
FseI GGCCGGCC 1 cut(s) 249
Fsp4HI GCNGC 8 cut(s) 15, 113, 116, 119, 194, 213, 577, 649
FspBI CTAG 4 cut(s) 458, 474, 528, 885
GlaI GCGC 3 cut(s) 192, 485, 898
GluI GCNGC 8 cut(s) 15, 113, 116, 119, 194, 213, 577, 649
GsaI CCCAGC 1 cut(s) 169
GsuI CTGGAG 2 cut(s) 837, 963
HaeII RGCGCY 1 cut(s) 487
HaeIII GGCC 6 cut(s) 14, 104, 245, 249, 551, 766
HapII CCGG 3 cut(s) 229, 246, 303
HhaI GCGC 3 cut(s) 193, 486, 899
Hin1II CATG 6 cut(s) 589, 619, 647, 694, 738, 955
Hin6I GCGC 3 cut(s) 191, 484, 897
HinP1I GCGC 3 cut(s) 191, 484, 897
HincII GTYRAC 1 cut(s) 936
HindII GTYRAC 1 cut(s) 936
HinfI GANTC 1 cut(s) 311
HpaII CCGG 3 cut(s) 229, 246, 303
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 3 cut(s) 55, 670, 936
Hpy188I TCNGA 4 cut(s) 326, 392, 517, 559
Hpy188III TCNNGA 6 cut(s) 229, 428, 489, 875, 942, 975
Hpy8I GTNNAC 3 cut(s) 55, 670, 936
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 1 cut(s) 427
HpyCH4V TGCA 7 cut(s) 55, 400, 566, 635, 835, 860, 913
HpyF10VI GCNNNNNNNGC 9 cut(s) 101, 118, 188, 392, 401, 657, 857, 894, 994
HpyF3I CTNAG 2 cut(s) 171, 345
Hsp92II CATG 6 cut(s) 589, 619, 647, 694, 738, 955
HspAI GCGC 3 cut(s) 191, 484, 897
Kpn2I TCCGGA 1 cut(s) 228
KroI GCCGGC 1 cut(s) 245
KroNI GCCGGC 1 cut(s) 247
Kzo9I GATC 5 cut(s) 387, 424, 454, 506, 559
LmnI GCTCC 5 cut(s) 53, 187, 392, 778, 856
Lsp1109I GCAGC 4 cut(s) 130, 224, 588, 660
LweI GCATC 1 cut(s) 822
MaeI CTAG 4 cut(s) 458, 474, 528, 885
MaeIII GTNAC 1 cut(s) 305
MalI GATC 5 cut(s) 389, 426, 456, 508, 561
MboI GATC 5 cut(s) 387, 424, 454, 506, 559
MboII GAAGA 6 cut(s) 229, 269, 280, 693, 841, 1003
MflI RGATCY 2 cut(s) 454, 506
MhlI GDGCHC 5 cut(s) 57, 812, 842, 853, 920
MluCI AATT 6 cut(s) 469, 601, 757, 789, 824, 921
MlyI GAGTC 1 cut(s) 320
MroI TCCGGA 1 cut(s) 228
MroNI GCCGGC 1 cut(s) 245
MslI CAYNNNNRTG 1 cut(s) 584
MspI CCGG 3 cut(s) 229, 246, 303
MspR9I CCNGG 5 cut(s) 45, 209, 303, 591, 813
Mva1269I GAATGC 2 cut(s) 579, 990
MvaI CCWGG 4 cut(s) 45, 209, 591, 813
MvnI CGCG 2 cut(s) 191, 294
MwoI GCNNNNNNNGC 9 cut(s) 101, 118, 188, 392, 401, 657, 857, 894, 994
NaeI GCCGGC 1 cut(s) 247
NciI CCSGG 1 cut(s) 303
NdeI CATATG 1 cut(s) 844
NdeII GATC 5 cut(s) 387, 424, 454, 506, 559
NgoMIV GCCGGC 1 cut(s) 245
NheI GCTAGC 1 cut(s) 884
NlaIII CATG 6 cut(s) 589, 619, 647, 694, 738, 955
NlaIV GGNNCC 6 cut(s) 49, 105, 233, 765, 809, 852
NspI RCATGY 1 cut(s) 589
PaqCI CACCTGC 1 cut(s) 557
PasI CCCWGGG 1 cut(s) 812
PctI GAATGC 2 cut(s) 579, 990
PdiI GCCGGC 1 cut(s) 247
PflFI GACNNNGTC 1 cut(s) 224
PflMI CCANNNNNTGG 2 cut(s) 139, 644
PkrI GCNGC 8 cut(s) 16, 114, 117, 120, 195, 214, 578, 650
Ple19I CGATCG 1 cut(s) 390
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
PsiI TTATAA 1 cut(s) 821
Psp6I CCWGG 4 cut(s) 43, 207, 589, 811
PspFI CCCAGC 1 cut(s) 165
PspGI CCWGG 4 cut(s) 43, 207, 589, 811
PspN4I GGNNCC 6 cut(s) 49, 105, 233, 765, 809, 852
PspPI GGNCC 7 cut(s) 103, 226, 231, 373, 477, 549, 764
PstI CTGCAG 2 cut(s) 568, 915
PsuI RGATCY 2 cut(s) 454, 506
PsyI GACNNNGTC 1 cut(s) 224
PvuI CGATCG 1 cut(s) 390
RigI GGCCGGCC 1 cut(s) 249
RsaI GTAC 1 cut(s) 775
RsaNI GTAC 1 cut(s) 774
RseI CAYNNNNRTG 1 cut(s) 584
SatI GCNGC 8 cut(s) 15, 113, 116, 119, 194, 213, 577, 649
Sau3AI GATC 5 cut(s) 387, 424, 454, 506, 559
Sau96I GGNCC 7 cut(s) 103, 226, 231, 373, 477, 549, 764
SbfI CCTGCAGG 1 cut(s) 568
SchI GAGTC 1 cut(s) 320
ScrFI CCNGG 5 cut(s) 45, 209, 303, 591, 813
SdaI CCTGCAGG 1 cut(s) 568
SduI GDGCHC 5 cut(s) 57, 812, 842, 853, 920
SfaNI GCATC 1 cut(s) 822
SfcI CTRYAG 2 cut(s) 564, 911
SinI GGWCC 4 cut(s) 226, 231, 373, 477
SmiMI CAYNNNNRTG 1 cut(s) 584
SmlI CTYRAG 2 cut(s) 428, 487
SmoI CTYRAG 2 cut(s) 428, 487
Sse8387I CCTGCAGG 1 cut(s) 568
Sse9I AATT 6 cut(s) 469, 601, 757, 789, 824, 921
SspMI CTAG 4 cut(s) 458, 474, 528, 885
StyD4I CCNGG 5 cut(s) 43, 207, 301, 589, 811
TaqI TCGA 2 cut(s) 440, 803
TasI AATT 6 cut(s) 469, 601, 757, 789, 824, 921
TauI GCSGC 4 cut(s) 17, 115, 118, 196
TscAI CASTG 4 cut(s) 411, 661, 667, 906
TseI GCWGC 4 cut(s) 118, 212, 576, 648
TspDTI ATGAA 4 cut(s) 134, 516, 525, 707
TspGWI ACGGA 2 cut(s) 40, 791
TspRI CASTG 4 cut(s) 411, 661, 667, 906
Tth111I GACNNNGTC 1 cut(s) 224
Van91I CCANNNNNTGG 2 cut(s) 139, 644
VneI GTGCAC 1 cut(s) 53
VpaK11BI GGWCC 4 cut(s) 226, 231, 373, 477
XceI RCATGY 1 cut(s) 589
XcmI CCANNNNNNNNNTGG 1 cut(s) 976
XspI CTAG 4 cut(s) 458, 474, 528, 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.