Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0007111

Physical Location & Seq

Genomic Coordinates Reverse (-)

9453055 .. 9456446

Gene Structure 3392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g16380.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGACGACATGGCCGCCTATTACCCTCCACCGCCTCCGCCACCGGGCTCCGTCCACTATTCATACTACCACCAGCCGCCACCTCAGCCGCCTCCCCCTGTGGCTCCGCCGCCGCCGCACCACTTGGTTCAGGCCTACTACCCTCCCCAGCCTCCACCTTACGCTCCCTACGCCGCGCCACTCGTCGCGCAGTCAGCCTACGACGAGGTCCGGACGCTGTTCGTGGCGGGCTTACCCGAAGATGTCAAGGCCCGGGAAATCTACAACCTCTTCCGCGAGTTTCCCGGTTACGAGTCCTCTCACCTCCGAACCCCCACCGAGAAAACTCAGCCTTTTGCATTTGCGGTGTTCTTGGACCAGCAATCTGCGATCGGAGCAATGCAAGCGCTGAATGGGATGGTATTTGATCTTGAGAAGGGGTCGACATTATATATAGATCTAGCAAAATCCAATTCTAGGTCCAAGCGCTCAAGAACAGGTACAGATGATGAAAGATCTGGCTCGGATAAGAAAGCTAGAGGTTCATCATATTCAAGGGCCACTTCTGACCCTGGTGTTGGCAGCATTCACATGCCTGGAATGGGTAATTCTGCTTACAACATGATTGGTTATCCATCTGCACCAAGTCATGGCAGCTTTAGTGGCAGTGGTGTAAATGAGACAATAGCCTCAAACATGAATATTTCTTCAGCACAACATTTTCCACAAAACAACACTCCATGCCCGACACTTTTCGTGGCTAATTTGGGGCCAACTTGTACAGAGCAAGAGCTAATTCAAGTATTTTCTAGGTGCCCTGGGTTTATAAAATTGAAGATGCAGAGCACATATGGAACTCCAGTAGCATTTGTTGATTTTCAGGATACTGCTAGCTCAACTGGCGCACTGAGTCATCTGCAAGGCACAATTCTCTACTCGTCAACGTCTGGAGAGGGCATGAGATTAGAGTTTGCCAAATCACGAATGGGAATGCGGAAGAAGCCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035239 GO:0035295 GO:0042127 GO:0042802 GO:0042803 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046983 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048660 GO:0048661 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051147 GO:0051148 GO:0051150 GO:0051151 GO:0051171 GO:0051252 GO:0055123 GO:0060255 GO:0065007 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

330

Amino Acids

35.74

Weight (kDa)

7.73

Isoelectric Point (pI)

57.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	73 - 136	3.2e-11	RNA recognition motif
RRM_1	PF00076	244 - 307	1.4e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42240 AT2G42240 AT2G42240
fragaria_vesca	FvH4_1g16380 FvH4_1g16380
malus_domestica	MD02G1176300.v1.1 MD15G1286700.v1.1
prunus_persica	Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1
pyrus_communis	pycom02g14250 pycom15g25000
rosa_chinensis	RchiOBHm_Chr2g0106251
rosa_laevigata	RLG00000017483
rosa_multiflora	Rmu_sc0008603.1_g000013
rosa_roxburghii	Rroxscaffold_2G00137330
rosa_rugosa	Rorug02G0133700 Rorug02G0133800
rosa_samantha	Rh2AG184900 Rh2BG195200 Rh2CG190000 Rh2DG191100
rosa_wichuraiana	Rw2G014440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	806
AccB1I	GGYRCC	1 cut(s)	792
AccB7I	CCANNNNNTGG	1 cut(s)	629
AccI	GTMKAC	1 cut(s)	422
AccII	CGCG	3 cut(s)	176, 188, 276
AccIII	TCCGGA	1 cut(s)	210
AcoI	YGGCCR	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	672
AfaI	GTAC	2 cut(s)	481, 760
AfeI	AGCGCT	2 cut(s)	387, 467
AfiI	CCNNNNNNNGG	5 cut(s)	44, 456, 557, 581, 629
AgsI	TTSAA	3 cut(s)	534, 779, 814
AjnI	CCWGG	3 cut(s)	550, 574, 796
AluBI	AGCT	4 cut(s)	515, 636, 772, 873
AluI	AGCT	4 cut(s)	515, 636, 772, 873
Alw21I	GWGCWC	1 cut(s)	827
Alw26I	GTCTC	1 cut(s)	653
Ama87I	CYCGRG	1 cut(s)	252
Aor13HI	TCCGGA	1 cut(s)	210
Aor51HI	AGCGCT	2 cut(s)	387, 467
AoxI	GGCC	5 cut(s)	12, 132, 249, 537, 749
ApeKI	GCWGC	2 cut(s)	561, 633
AspLEI	GCGC	5 cut(s)	178, 190, 388, 468, 884
AspS9I	GGNCC	6 cut(s)	208, 250, 355, 459, 537, 749
AsuC2I	CCSGG	4 cut(s)	45, 253, 254, 285
AsuHPI	GGTGA	1 cut(s)	293
AsuNHI	GCTAGC	1 cut(s)	869
AvaI	CYCGRG	1 cut(s)	252
AvaII	GGWCC	3 cut(s)	208, 355, 459
BaeGI	GKGCMC	1 cut(s)	797
BanI	GGYRCC	1 cut(s)	792
BanII	GRGCYC	1 cut(s)	50
Bbv12I	GWGCWC	1 cut(s)	827
BbvCI	CCTCAGC	1 cut(s)	84
BbvI	GCAGC	2 cut(s)	573, 645
BccI	CCATC	2 cut(s)	391, 622
BciT130I	CCWGG	3 cut(s)	552, 576, 798
BciVI	GTATCC	1 cut(s)	856
BcnI	CCSGG	4 cut(s)	45, 253, 254, 285
BcoDI	GTCTC	1 cut(s)	653
BfaI	CTAG	5 cut(s)	440, 456, 516, 789, 870
BfoI	RGCGCY	2 cut(s)	389, 469
BfuI	GTATCC	1 cut(s)	856
BglII	AGATCT	2 cut(s)	436, 494
BisI	GCNGC	9 cut(s)	15, 77, 89, 110, 113, 116, 174, 562, 634
BlsI	GCNGC	9 cut(s)	16, 78, 90, 111, 114, 117, 175, 563, 635
Bme1390I	CCNGG	7 cut(s)	45, 253, 254, 285, 552, 576, 798
Bme18I	GGWCC	3 cut(s)	208, 355, 459
BmeT110I	CYCGRG	1 cut(s)	252
BmgT120I	GGNCC	6 cut(s)	208, 250, 355, 459, 537, 749
BmiI	GGNNCC	4 cut(s)	49, 105, 750, 794
BmrFI	CCNGG	7 cut(s)	45, 253, 254, 285, 552, 576, 798
BmsI	GCATC	1 cut(s)	807
BmtI	GCTAGC	1 cut(s)	873
BpmI	CTGGAG	2 cut(s)	822, 948
Bpu10I	CCTNAGC	1 cut(s)	84
BpuEI	CTTGAG	2 cut(s)	431, 454
BpuMI	CCSGG	4 cut(s)	45, 253, 254, 285
BsaJI	CCNNGG	4 cut(s)	252, 550, 796, 797
BsaWI	WCCGGW	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	5 cut(s)	44, 456, 557, 581, 629
Bse1I	ACTGG	2 cut(s)	839, 883
Bse3DI	GCAATG	1 cut(s)	384
BseAI	TCCGGA	1 cut(s)	210
BseBI	CCWGG	3 cut(s)	552, 576, 798
BseDI	CCNNGG	4 cut(s)	252, 550, 796, 797
BseGI	GGATG	1 cut(s)	402
BseLI	CCNNNNNNNGG	5 cut(s)	44, 456, 557, 581, 629
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	3 cut(s)	98, 341, 878
BseNI	ACTGG	2 cut(s)	839, 883
BseSI	GKGCMC	1 cut(s)	797
BseXI	GCAGC	2 cut(s)	573, 645
BseYI	CCCAGC	1 cut(s)	147
BsgI	GTGCAG	1 cut(s)	603
Bsh1236I	CGCG	3 cut(s)	176, 188, 276
Bsh1285I	CGRYCG	1 cut(s)	372
BshFI	GGCC	5 cut(s)	14, 134, 251, 539, 751
BshNI	GGYRCC	1 cut(s)	792
BsiEI	CGRYCG	1 cut(s)	372
BsiHKAI	GWGCWC	1 cut(s)	827
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	4 cut(s)	44, 211, 253, 285
BslI	CCNNNNNNNGG	5 cut(s)	44, 456, 557, 581, 629
BsmAI	GTCTC	1 cut(s)	653
BsmI	GAATGC	2 cut(s)	564, 975
BsnI	GGCC	5 cut(s)	14, 134, 251, 539, 751
BsoBI	CYCGRG	1 cut(s)	252
Bsp1286I	GDGCHC	3 cut(s)	50, 797, 827
Bsp13I	TCCGGA	1 cut(s)	210
Bsp1407I	TGTACA	1 cut(s)	758
Bsp143I	GATC	4 cut(s)	369, 406, 436, 494
BspANI	GGCC	5 cut(s)	14, 134, 251, 539, 751
BspCNI	CTCAG	3 cut(s)	97, 340, 879
BspEI	TCCGGA	1 cut(s)	210
BspFNI	CGCG	3 cut(s)	176, 188, 276
BspLI	GGNNCC	4 cut(s)	49, 105, 750, 794
BspOI	GCTAGC	1 cut(s)	873
BspT107I	GGYRCC	1 cut(s)	792
BsrDI	GCAATG	1 cut(s)	384
BsrGI	TGTACA	1 cut(s)	758
BsrI	ACTGG	2 cut(s)	839, 883
BssECI	CCNNGG	4 cut(s)	252, 550, 796, 797
BssMI	GATC	4 cut(s)	369, 406, 436, 494
Bst2UI	CCWGG	3 cut(s)	552, 576, 798
Bst6I	CTCTTC	1 cut(s)	275
BstAUI	TGTACA	1 cut(s)	758
BstC8I	GCNNGC	3 cut(s)	229, 384, 871
BstDEI	CTNAG	3 cut(s)	84, 327, 887
BstF5I	GGATG	1 cut(s)	402
BstFNI	CGCG	3 cut(s)	176, 188, 276
BstH2I	RGCGCY	2 cut(s)	389, 469
BstHHI	GCGC	5 cut(s)	178, 190, 388, 468, 884
BstKTI	GATC	4 cut(s)	372, 409, 439, 497
BstMAI	GTCTC	1 cut(s)	653
BstMBI	GATC	4 cut(s)	369, 406, 436, 494
BstMCI	CGRYCG	1 cut(s)	372
BstMWI	GCNNNNNNNGC	9 cut(s)	85, 115, 170, 194, 374, 383, 642, 879, 979
BstNI	CCWGG	3 cut(s)	552, 576, 798
BstNSI	RCATGY	1 cut(s)	574
BstSCI	CCNGG	7 cut(s)	43, 251, 252, 283, 550, 574, 796
BstSLI	GKGCMC	1 cut(s)	797
BstUI	CGCG	3 cut(s)	176, 188, 276
BstV1I	GCAGC	2 cut(s)	573, 645
BstX2I	RGATCY	2 cut(s)	436, 494
BstYI	RGATCY	2 cut(s)	436, 494
BsuI	GTATCC	1 cut(s)	856
BsuRI	GGCC	5 cut(s)	14, 134, 251, 539, 751
BtsCI	GGATG	1 cut(s)	402
BtsI	GCAGTG	1 cut(s)	652
BtsIMutI	CAGTG	2 cut(s)	652, 884
Cac8I	GCNNGC	3 cut(s)	229, 384, 871
CfoI	GCGC	5 cut(s)	178, 190, 388, 468, 884
Cfr13I	GGNCC	6 cut(s)	208, 250, 355, 459, 537, 749
Cfr9I	CCCGGG	1 cut(s)	252
CseI	GACGC	1 cut(s)	223
Csp6I	GTAC	2 cut(s)	480, 759
CviAII	CATG	7 cut(s)	10, 571, 601, 629, 676, 720, 937
CviQI	GTAC	2 cut(s)	480, 759
DdeI	CTNAG	3 cut(s)	84, 327, 887
DpnI	GATC	4 cut(s)	371, 408, 438, 496
DpnII	GATC	4 cut(s)	369, 406, 436, 494
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
EciI	GGCGGA	2 cut(s)	27, 96
Eco147I	AGGCCT	1 cut(s)	134
Eco24I	GRGCYC	1 cut(s)	50
Eco47I	GGWCC	3 cut(s)	208, 355, 459
Eco47III	AGCGCT	2 cut(s)	387, 467
Eco57I	CTGAAG	1 cut(s)	672
Eco88I	CYCGRG	1 cut(s)	252
EcoRII	CCWGG	3 cut(s)	550, 574, 796
EcoT38I	GRGCYC	1 cut(s)	50
FaeI	CATG	7 cut(s)	13, 574, 604, 632, 679, 723, 940
FalI	AAGNNNNNCTT	2 cut(s)	526, 558
FatI	CATG	7 cut(s)	9, 570, 600, 628, 675, 719, 936
FauI	CCCGC	1 cut(s)	220
FauNDI	CATATG	1 cut(s)	829
FblI	GTMKAC	1 cut(s)	422
Fnu4HI	GCNGC	9 cut(s)	15, 77, 89, 110, 113, 116, 174, 562, 634
FokI	GGATG	1 cut(s)	409
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	9 cut(s)	15, 77, 89, 110, 113, 116, 174, 562, 634
FspBI	CTAG	5 cut(s)	440, 456, 516, 789, 870
GlaI	GCGC	5 cut(s)	177, 189, 387, 467, 883
GluI	GCNGC	9 cut(s)	15, 77, 89, 110, 113, 116, 174, 562, 634
GsaI	CCCAGC	1 cut(s)	151
GsuI	CTGGAG	2 cut(s)	822, 948
HaeII	RGCGCY	2 cut(s)	389, 469
HaeIII	GGCC	5 cut(s)	14, 134, 251, 539, 751
HapII	CCGG	4 cut(s)	44, 211, 253, 285
HgaI	GACGC	1 cut(s)	223
HhaI	GCGC	5 cut(s)	178, 190, 388, 468, 884
Hin1II	CATG	7 cut(s)	13, 574, 604, 632, 679, 723, 940
Hin6I	GCGC	5 cut(s)	176, 188, 386, 466, 882
HinP1I	GCGC	5 cut(s)	176, 188, 386, 466, 882
HincII	GTYRAC	2 cut(s)	423, 921
HindII	GTYRAC	2 cut(s)	423, 921
HinfI	GANTC	2 cut(s)	293, 889
HpaII	CCGG	4 cut(s)	44, 211, 253, 285
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	3 cut(s)	55, 423, 921
Hpy188I	TCNGA	4 cut(s)	308, 374, 505, 547
Hpy188III	TCNNGA	6 cut(s)	211, 410, 471, 860, 927, 960
Hpy8I	GTNNAC	3 cut(s)	55, 423, 921
Hpy99I	CGWCG	2 cut(s)	188, 206
HpyAV	CCTTC	1 cut(s)	409
HpyCH4IV	ACGT	1 cut(s)	923
HpyCH4V	TGCA	5 cut(s)	338, 382, 620, 820, 898
HpyF10VI	GCNNNNNNNGC	9 cut(s)	85, 115, 170, 194, 374, 383, 642, 879, 979
HpyF3I	CTNAG	3 cut(s)	84, 327, 887
HpySE526I	ACGT	1 cut(s)	923
Hsp92II	CATG	7 cut(s)	13, 574, 604, 632, 679, 723, 940
HspAI	GCGC	5 cut(s)	176, 188, 386, 466, 882
Kpn2I	TCCGGA	1 cut(s)	210
Kzo9I	GATC	4 cut(s)	369, 406, 436, 494
LmnI	GCTCC	4 cut(s)	53, 109, 169, 374
Lsp1109I	GCAGC	2 cut(s)	573, 645
LweI	GCATC	1 cut(s)	807
MaeI	CTAG	5 cut(s)	440, 456, 516, 789, 870
MaeII	ACGT	1 cut(s)	923
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	4 cut(s)	371, 408, 438, 496
MboI	GATC	4 cut(s)	369, 406, 436, 494
MboII	GAAGA	5 cut(s)	251, 262, 678, 826, 988
MflI	RGATCY	2 cut(s)	436, 494
MhlI	GDGCHC	3 cut(s)	50, 797, 827
MluCI	AATT	6 cut(s)	451, 586, 742, 774, 809, 906
MlyI	GAGTC	2 cut(s)	302, 898
MroI	TCCGGA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	569
MspI	CCGG	4 cut(s)	44, 211, 253, 285
MspR9I	CCNGG	7 cut(s)	45, 253, 254, 285, 552, 576, 798
Mva1269I	GAATGC	2 cut(s)	564, 975
MvaI	CCWGG	3 cut(s)	552, 576, 798
MvnI	CGCG	3 cut(s)	176, 188, 276
MwoI	GCNNNNNNNGC	9 cut(s)	85, 115, 170, 194, 374, 383, 642, 879, 979
NciI	CCSGG	4 cut(s)	45, 253, 254, 285
NdeI	CATATG	1 cut(s)	829
NdeII	GATC	4 cut(s)	369, 406, 436, 494
NheI	GCTAGC	1 cut(s)	869
NlaIII	CATG	7 cut(s)	13, 574, 604, 632, 679, 723, 940
NlaIV	GGNNCC	4 cut(s)	49, 105, 750, 794
NspI	RCATGY	1 cut(s)	574
PasI	CCCWGGG	1 cut(s)	797
PceI	AGGCCT	1 cut(s)	134
PctI	GAATGC	2 cut(s)	564, 975
PflFI	GACNNNGTC	1 cut(s)	206
PflMI	CCANNNNNTGG	1 cut(s)	629
PkrI	GCNGC	9 cut(s)	16, 78, 90, 111, 114, 117, 175, 563, 635
Ple19I	CGATCG	1 cut(s)	372
PleI	GAGTC	2 cut(s)	301, 897
PpsI	GAGTC	2 cut(s)	301, 897
PsiI	TTATAA	1 cut(s)	806
Psp6I	CCWGG	3 cut(s)	550, 574, 796
PspFI	CCCAGC	1 cut(s)	147
PspGI	CCWGG	3 cut(s)	550, 574, 796
PspN4I	GGNNCC	4 cut(s)	49, 105, 750, 794
PspPI	GGNCC	6 cut(s)	208, 250, 355, 459, 537, 749
PsuI	RGATCY	2 cut(s)	436, 494
PsyI	GACNNNGTC	1 cut(s)	206
PvuI	CGATCG	1 cut(s)	372
RsaI	GTAC	2 cut(s)	481, 760
RsaNI	GTAC	2 cut(s)	480, 759
RseI	CAYNNNNRTG	1 cut(s)	569
SalI	GTCGAC	1 cut(s)	421
SatI	GCNGC	9 cut(s)	15, 77, 89, 110, 113, 116, 174, 562, 634
Sau3AI	GATC	4 cut(s)	369, 406, 436, 494
Sau96I	GGNCC	6 cut(s)	208, 250, 355, 459, 537, 749
SchI	GAGTC	2 cut(s)	302, 898
ScrFI	CCNGG	7 cut(s)	45, 253, 254, 285, 552, 576, 798
SduI	GDGCHC	3 cut(s)	50, 797, 827
SfaNI	GCATC	1 cut(s)	807
SinI	GGWCC	3 cut(s)	208, 355, 459
SmaI	CCCGGG	1 cut(s)	254
SmiMI	CAYNNNNRTG	1 cut(s)	569
SmlI	CTYRAG	2 cut(s)	410, 469
SmoI	CTYRAG	2 cut(s)	410, 469
Sse9I	AATT	6 cut(s)	451, 586, 742, 774, 809, 906
SseBI	AGGCCT	1 cut(s)	134
SspI	AATATT	1 cut(s)	682
SspMI	CTAG	5 cut(s)	440, 456, 516, 789, 870
StuI	AGGCCT	1 cut(s)	134
StyD4I	CCNGG	7 cut(s)	43, 251, 252, 283, 550, 574, 796
TaiI	ACGT	1 cut(s)	926
TaqI	TCGA	1 cut(s)	422
TasI	AATT	6 cut(s)	451, 586, 742, 774, 809, 906
TatI	WGTACW	1 cut(s)	758
TauI	GCSGC	7 cut(s)	17, 79, 91, 112, 115, 118, 176
TscAI	CASTG	2 cut(s)	652, 891
TseI	GCWGC	2 cut(s)	561, 633
TspDTI	ATGAA	4 cut(s)	51, 504, 513, 692
TspGWI	ACGGA	1 cut(s)	40
TspMI	CCCGGG	1 cut(s)	252
TspRI	CASTG	2 cut(s)	652, 891
Tth111I	GACNNNGTC	1 cut(s)	206
Van91I	CCANNNNNTGG	1 cut(s)	629
VpaK11BI	GGWCC	3 cut(s)	208, 355, 459
XceI	RCATGY	1 cut(s)	574
XcmI	CCANNNNNNNNNTGG	1 cut(s)	961
XmaI	CCCGGG	1 cut(s)	252
XmiI	GTMKAC	1 cut(s)	422
XspI	CTAG	5 cut(s)	440, 456, 516, 789, 870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.