Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008603.1

Orthogroup ID

OG0007111

Physical Location & Seq

Genomic Coordinates Reverse (-)

81499 .. 84457

Gene Structure 2959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008603.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

atggccgcctattaccctccaccgcctccgccaccaggctccgtccactatccatactaccaccaccagccacctcaaccgcctgcccctccgccgccgccgcaccaccaccacttggttcatcagccctactaccctccccagcctcagcctcagcctcagccttacgctccctacgcgccgccgctcgtcgcccaggccgcctacgacgaggtccggaccctcttcgtggccggcctacccgaagatgtcaagccccgtgaaatctacaacctcttccgcgagtttcccggttacgagtcctctcacctccgaacccccaccgagaaaactcagccttttgcgtttgcggtgttcttggaccagcaatctgcgatcggagcaatgcaagcactgaatgggatggtatttgatcttgagaaggggtcgacattatatatagatctagcaaaatctaattctaggtccaagcgctcaagaacagacgatgaaagatctggctcggataagaaagctagaggttcatcatattcaagggccacttctgatcctggtgttggcagcattcacatgcctggaatgggtaattctgcttacaacatgattggttatccatctgcaccaagtcatggcagcttcagtggtagtggtgtaaatgagccaatagcctcaaacatgaatagttcttcagcacaacattttccacaaaacaatactccatgcccaacactttttgtggctaatttggggccaacttgtacggagcaagagctagttcaagtattttcgaggtgccctgggtttataaaattgaagatgcagagcacatatggggctccagttgcatttgttgattttcaggatactgctagctcaactggcgcactgggccatctgcagggcacaattctctactcgtcaacatctggagagggcatgagattagagtttgccaaatcacgaatgggaatgcggaagaagccgaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035239 GO:0035295 GO:0042127 GO:0042802 GO:0042803 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046983 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048660 GO:0048661 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051147 GO:0051148 GO:0051150 GO:0051151 GO:0051171 GO:0051252 GO:0055123 GO:0060255 GO:0065007 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

329

Amino Acids

35.92

Weight (kDa)

8.6

Isoelectric Point (pI)

59.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42240 AT2G42240 AT2G42240
fragaria_vesca	FvH4_1g16380 FvH4_1g16380
malus_domestica	MD02G1176300.v1.1 MD15G1286700.v1.1
prunus_persica	Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1 Prupe.6G231400_v2.0.a1
pyrus_communis	pycom02g14250 pycom15g25000
rosa_chinensis	RchiOBHm_Chr2g0106251
rosa_laevigata	RLG00000017483
rosa_multiflora	Rmu_sc0008603.1_g000013
rosa_roxburghii	Rroxscaffold_2G00137330
rosa_rugosa	Rorug02G0133700 Rorug02G0133800
rosa_samantha	Rh2AG184900 Rh2BG195200 Rh2CG190000 Rh2DG191100
rosa_wichuraiana	Rw2G014440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	806
AccB1I	GGYRCC	1 cut(s)	792
AccB7I	CCANNNNNTGG	2 cut(s)	115, 629
AccBSI	CCGCTC	1 cut(s)	187
AccI	GTMKAC	1 cut(s)	428
AccII	CGCG	2 cut(s)	179, 282
AccIII	TCCGGA	1 cut(s)	216
AclWI	GGATC	1 cut(s)	542
AcoI	YGGCCR	2 cut(s)	3, 231
AcuI	CTGAAG	2 cut(s)	622, 672
AfaI	GTAC	1 cut(s)	760
AfeI	AGCGCT	1 cut(s)	473
AfiI	CCNNNNNNNGG	7 cut(s)	35, 115, 229, 557, 581, 629, 898
AgsI	TTSAA	3 cut(s)	534, 779, 814
AjnI	CCWGG	5 cut(s)	34, 195, 550, 574, 796
AluBI	AGCT	4 cut(s)	515, 636, 772, 873
AluI	AGCT	4 cut(s)	515, 636, 772, 873
Alw21I	GWGCWC	1 cut(s)	827
AlwI	GGATC	1 cut(s)	542
Aor13HI	TCCGGA	1 cut(s)	216
Aor51HI	AGCGCT	1 cut(s)	473
AoxI	GGCC	7 cut(s)	3, 198, 231, 235, 537, 749, 889
ApeKI	GCWGC	2 cut(s)	561, 633
AspLEI	GCGC	3 cut(s)	181, 474, 884
AspS9I	GGNCC	7 cut(s)	214, 219, 361, 465, 537, 749, 889
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	299
AsuNHI	GCTAGC	1 cut(s)	869
AvaII	GGWCC	4 cut(s)	214, 219, 361, 465
BaeGI	GKGCMC	2 cut(s)	797, 905
BanI	GGYRCC	1 cut(s)	792
BanII	GRGCYC	1 cut(s)	838
Bbv12I	GWGCWC	1 cut(s)	827
BbvCI	CCTCAGC	3 cut(s)	147, 153, 159
BbvI	GCAGC	2 cut(s)	573, 645
BccI	CCATC	3 cut(s)	397, 622, 900
BciT130I	CCWGG	5 cut(s)	36, 197, 552, 576, 798
BciVI	GTATCC	1 cut(s)	856
BcnI	CCSGG	1 cut(s)	291
BfaI	CTAG	5 cut(s)	446, 462, 516, 773, 870
BfmI	CTRYAG	1 cut(s)	896
BfoI	RGCGCY	1 cut(s)	475
BfuI	GTATCC	1 cut(s)	856
BglII	AGATCT	2 cut(s)	442, 494
BisI	GCNGC	9 cut(s)	6, 95, 98, 101, 182, 185, 201, 562, 634
BlsI	GCNGC	9 cut(s)	7, 96, 99, 102, 183, 186, 202, 563, 635
Bme1390I	CCNGG	6 cut(s)	36, 197, 291, 552, 576, 798
Bme18I	GGWCC	4 cut(s)	214, 219, 361, 465
BmgT120I	GGNCC	7 cut(s)	214, 219, 361, 465, 537, 749, 889
BmiI	GGNNCC	5 cut(s)	40, 221, 750, 794, 837
BmrFI	CCNGG	6 cut(s)	36, 197, 291, 552, 576, 798
BmrI	ACTGGG	1 cut(s)	896
BmsI	GCATC	1 cut(s)	807
BmtI	GCTAGC	1 cut(s)	873
BmuI	ACTGGG	1 cut(s)	896
BpmI	CTGGAG	2 cut(s)	822, 948
Bpu10I	CCTNAGC	3 cut(s)	147, 153, 159
BpuEI	CTTGAG	2 cut(s)	437, 460
BpuMI	CCSGG	1 cut(s)	291
BsaJI	CCNNGG	3 cut(s)	195, 796, 797
BsaWI	WCCGGW	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	7 cut(s)	35, 115, 229, 557, 581, 629, 898
Bse118I	RCCGGY	1 cut(s)	233
Bse1I	ACTGG	3 cut(s)	839, 883, 891
Bse3DI	GCAATG	1 cut(s)	390
BseAI	TCCGGA	1 cut(s)	216
BseBI	CCWGG	5 cut(s)	36, 197, 552, 576, 798
BseDI	CCNNGG	3 cut(s)	195, 796, 797
BseGI	GGATG	1 cut(s)	408
BseLI	CCNNNNNNNGG	7 cut(s)	35, 115, 229, 557, 581, 629, 898
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	4 cut(s)	161, 167, 173, 347
BseNI	ACTGG	3 cut(s)	839, 883, 891
BseSI	GKGCMC	2 cut(s)	797, 905
BseXI	GCAGC	2 cut(s)	573, 645
BseYI	CCCAGC	1 cut(s)	141
BsgI	GTGCAG	1 cut(s)	603
Bsh1236I	CGCG	2 cut(s)	179, 282
Bsh1285I	CGRYCG	1 cut(s)	378
BshFI	GGCC	7 cut(s)	5, 200, 233, 237, 539, 751, 891
BshNI	GGYRCC	1 cut(s)	792
BsiEI	CGRYCG	1 cut(s)	378
BsiHKAI	GWGCWC	1 cut(s)	827
BsiSI	CCGG	3 cut(s)	217, 234, 291
BslI	CCNNNNNNNGG	7 cut(s)	35, 115, 229, 557, 581, 629, 898
BsmI	GAATGC	2 cut(s)	564, 975
BsnI	GGCC	7 cut(s)	5, 200, 233, 237, 539, 751, 891
Bsp1286I	GDGCHC	4 cut(s)	797, 827, 838, 905
Bsp13I	TCCGGA	1 cut(s)	216
Bsp143I	GATC	5 cut(s)	375, 412, 442, 494, 547
BspANI	GGCC	7 cut(s)	5, 200, 233, 237, 539, 751, 891
BspCNI	CTCAG	4 cut(s)	160, 166, 172, 346
BspEI	TCCGGA	1 cut(s)	216
BspFNI	CGCG	2 cut(s)	179, 282
BspLI	GGNNCC	5 cut(s)	40, 221, 750, 794, 837
BspMAI	CTGCAG	1 cut(s)	900
BspOI	GCTAGC	1 cut(s)	873
BspPI	GGATC	1 cut(s)	542
BspT107I	GGYRCC	1 cut(s)	792
BsrBI	CCGCTC	1 cut(s)	187
BsrDI	GCAATG	1 cut(s)	390
BsrFI	RCCGGY	1 cut(s)	233
BsrI	ACTGG	3 cut(s)	839, 883, 891
BssAI	RCCGGY	1 cut(s)	233
BssECI	CCNNGG	3 cut(s)	195, 796, 797
BssMI	GATC	5 cut(s)	375, 412, 442, 494, 547
Bst2UI	CCWGG	5 cut(s)	36, 197, 552, 576, 798
Bst6I	CTCTTC	2 cut(s)	230, 281
BstC8I	GCNNGC	4 cut(s)	84, 235, 390, 871
BstDEI	CTNAG	4 cut(s)	147, 153, 159, 333
BstF5I	GGATG	1 cut(s)	408
BstFNI	CGCG	2 cut(s)	179, 282
BstH2I	RGCGCY	1 cut(s)	475
BstHHI	GCGC	3 cut(s)	181, 474, 884
BstKTI	GATC	5 cut(s)	378, 415, 445, 497, 550
BstMBI	GATC	5 cut(s)	375, 412, 442, 494, 547
BstMCI	CGRYCG	1 cut(s)	378
BstMWI	GCNNNNNNNGC	9 cut(s)	100, 176, 200, 380, 389, 842, 879, 888, 979
BstNI	CCWGG	5 cut(s)	36, 197, 552, 576, 798
BstNSI	RCATGY	1 cut(s)	574
BstSCI	CCNGG	6 cut(s)	34, 195, 289, 550, 574, 796
BstSFI	CTRYAG	1 cut(s)	896
BstSLI	GKGCMC	2 cut(s)	797, 905
BstUI	CGCG	2 cut(s)	179, 282
BstV1I	GCAGC	2 cut(s)	573, 645
BstX2I	RGATCY	2 cut(s)	442, 494
BstYI	RGATCY	2 cut(s)	442, 494
BsuI	GTATCC	1 cut(s)	856
BsuRI	GGCC	7 cut(s)	5, 200, 233, 237, 539, 751, 891
BtsCI	GGATG	1 cut(s)	408
BtsIMutI	CAGTG	3 cut(s)	392, 646, 884
Cac8I	GCNNGC	4 cut(s)	84, 235, 390, 871
CfoI	GCGC	3 cut(s)	181, 474, 884
Cfr10I	RCCGGY	1 cut(s)	233
Cfr13I	GGNCC	7 cut(s)	214, 219, 361, 465, 537, 749, 889
Csp6I	GTAC	1 cut(s)	759
CviAII	CATG	6 cut(s)	571, 601, 629, 676, 720, 937
CviQI	GTAC	1 cut(s)	759
DdeI	CTNAG	4 cut(s)	147, 153, 159, 333
DpnI	GATC	5 cut(s)	377, 414, 444, 496, 549
DpnII	GATC	5 cut(s)	375, 412, 442, 494, 547
EaeI	YGGCCR	2 cut(s)	3, 231
Eam1104I	CTCTTC	2 cut(s)	230, 281
EarI	CTCTTC	2 cut(s)	230, 281
EciI	GGCGGA	2 cut(s)	18, 81
Eco24I	GRGCYC	1 cut(s)	838
Eco47I	GGWCC	4 cut(s)	214, 219, 361, 465
Eco47III	AGCGCT	1 cut(s)	473
Eco57I	CTGAAG	2 cut(s)	622, 672
EcoRII	CCWGG	5 cut(s)	34, 195, 550, 574, 796
EcoT38I	GRGCYC	1 cut(s)	838
FaeI	CATG	6 cut(s)	574, 604, 632, 679, 723, 940
FalI	AAGNNNNNCTT	2 cut(s)	526, 558
FatI	CATG	6 cut(s)	570, 600, 628, 675, 719, 936
FauNDI	CATATG	1 cut(s)	829
FblI	GTMKAC	1 cut(s)	428
Fnu4HI	GCNGC	9 cut(s)	6, 95, 98, 101, 182, 185, 201, 562, 634
FokI	GGATG	1 cut(s)	415
FriOI	GRGCYC	1 cut(s)	838
FseI	GGCCGGCC	1 cut(s)	237
Fsp4HI	GCNGC	9 cut(s)	6, 95, 98, 101, 182, 185, 201, 562, 634
FspBI	CTAG	5 cut(s)	446, 462, 516, 773, 870
GlaI	GCGC	3 cut(s)	180, 473, 883
GluI	GCNGC	9 cut(s)	6, 95, 98, 101, 182, 185, 201, 562, 634
GsaI	CCCAGC	1 cut(s)	145
GsuI	CTGGAG	2 cut(s)	822, 948
HaeII	RGCGCY	1 cut(s)	475
HaeIII	GGCC	7 cut(s)	5, 200, 233, 237, 539, 751, 891
HapII	CCGG	3 cut(s)	217, 234, 291
HhaI	GCGC	3 cut(s)	181, 474, 884
Hin1II	CATG	6 cut(s)	574, 604, 632, 679, 723, 940
Hin6I	GCGC	3 cut(s)	179, 472, 882
HinP1I	GCGC	3 cut(s)	179, 472, 882
HincII	GTYRAC	2 cut(s)	429, 921
HindII	GTYRAC	2 cut(s)	429, 921
HinfI	GANTC	1 cut(s)	299
HpaII	CCGG	3 cut(s)	217, 234, 291
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	3 cut(s)	46, 429, 921
Hpy188I	TCNGA	4 cut(s)	314, 380, 505, 547
Hpy188III	TCNNGA	6 cut(s)	217, 416, 477, 860, 927, 960
Hpy8I	GTNNAC	3 cut(s)	46, 429, 921
Hpy99I	CGWCG	2 cut(s)	194, 212
HpyAV	CCTTC	1 cut(s)	415
HpyCH4V	TGCA	5 cut(s)	388, 620, 820, 845, 898
HpyF10VI	GCNNNNNNNGC	9 cut(s)	100, 176, 200, 380, 389, 842, 879, 888, 979
HpyF3I	CTNAG	4 cut(s)	147, 153, 159, 333
Hsp92II	CATG	6 cut(s)	574, 604, 632, 679, 723, 940
HspAI	GCGC	3 cut(s)	179, 472, 882
Kpn2I	TCCGGA	1 cut(s)	216
KroI	GCCGGC	1 cut(s)	233
KroNI	GCCGGC	1 cut(s)	235
Kzo9I	GATC	5 cut(s)	375, 412, 442, 494, 547
LmnI	GCTCC	5 cut(s)	44, 175, 380, 763, 841
Lsp1109I	GCAGC	2 cut(s)	573, 645
LweI	GCATC	1 cut(s)	807
MaeI	CTAG	5 cut(s)	446, 462, 516, 773, 870
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	5 cut(s)	377, 414, 444, 496, 549
MbiI	CCGCTC	1 cut(s)	187
MboI	GATC	5 cut(s)	375, 412, 442, 494, 547
MboII	GAAGA	6 cut(s)	217, 257, 268, 678, 826, 988
MflI	RGATCY	2 cut(s)	442, 494
MhlI	GDGCHC	4 cut(s)	797, 827, 838, 905
MluCI	AATT	5 cut(s)	457, 586, 742, 809, 906
MlyI	GAGTC	1 cut(s)	308
MroI	TCCGGA	1 cut(s)	216
MroNI	GCCGGC	1 cut(s)	233
MslI	CAYNNNNRTG	1 cut(s)	569
MspI	CCGG	3 cut(s)	217, 234, 291
MspR9I	CCNGG	6 cut(s)	36, 197, 291, 552, 576, 798
Mva1269I	GAATGC	2 cut(s)	564, 975
MvaI	CCWGG	5 cut(s)	36, 197, 552, 576, 798
MvnI	CGCG	2 cut(s)	179, 282
MwoI	GCNNNNNNNGC	9 cut(s)	100, 176, 200, 380, 389, 842, 879, 888, 979
NaeI	GCCGGC	1 cut(s)	235
NciI	CCSGG	1 cut(s)	291
NdeI	CATATG	1 cut(s)	829
NdeII	GATC	5 cut(s)	375, 412, 442, 494, 547
NgoMIV	GCCGGC	1 cut(s)	233
NheI	GCTAGC	1 cut(s)	869
NlaIII	CATG	6 cut(s)	574, 604, 632, 679, 723, 940
NlaIV	GGNNCC	5 cut(s)	40, 221, 750, 794, 837
NspI	RCATGY	1 cut(s)	574
PasI	CCCWGGG	1 cut(s)	797
PctI	GAATGC	2 cut(s)	564, 975
PdiI	GCCGGC	1 cut(s)	235
PflFI	GACNNNGTC	1 cut(s)	212
PflMI	CCANNNNNTGG	2 cut(s)	115, 629
PkrI	GCNGC	9 cut(s)	7, 96, 99, 102, 183, 186, 202, 563, 635
Ple19I	CGATCG	1 cut(s)	378
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
PsiI	TTATAA	1 cut(s)	806
Psp6I	CCWGG	5 cut(s)	34, 195, 550, 574, 796
PspFI	CCCAGC	1 cut(s)	141
PspGI	CCWGG	5 cut(s)	34, 195, 550, 574, 796
PspN4I	GGNNCC	5 cut(s)	40, 221, 750, 794, 837
PspPI	GGNCC	7 cut(s)	214, 219, 361, 465, 537, 749, 889
PstI	CTGCAG	1 cut(s)	900
PsuI	RGATCY	2 cut(s)	442, 494
PsyI	GACNNNGTC	1 cut(s)	212
PvuI	CGATCG	1 cut(s)	378
RigI	GGCCGGCC	1 cut(s)	237
RsaI	GTAC	1 cut(s)	760
RsaNI	GTAC	1 cut(s)	759
RseI	CAYNNNNRTG	1 cut(s)	569
SalI	GTCGAC	1 cut(s)	427
SatI	GCNGC	9 cut(s)	6, 95, 98, 101, 182, 185, 201, 562, 634
Sau3AI	GATC	5 cut(s)	375, 412, 442, 494, 547
Sau96I	GGNCC	7 cut(s)	214, 219, 361, 465, 537, 749, 889
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	6 cut(s)	36, 197, 291, 552, 576, 798
SduI	GDGCHC	4 cut(s)	797, 827, 838, 905
SfaNI	GCATC	1 cut(s)	807
SfcI	CTRYAG	1 cut(s)	896
SinI	GGWCC	4 cut(s)	214, 219, 361, 465
SmiMI	CAYNNNNRTG	1 cut(s)	569
SmlI	CTYRAG	2 cut(s)	416, 475
SmoI	CTYRAG	2 cut(s)	416, 475
Sse9I	AATT	5 cut(s)	457, 586, 742, 809, 906
SspMI	CTAG	5 cut(s)	446, 462, 516, 773, 870
StyD4I	CCNGG	6 cut(s)	34, 195, 289, 550, 574, 796
TaqI	TCGA	2 cut(s)	428, 788
TasI	AATT	5 cut(s)	457, 586, 742, 809, 906
TauI	GCSGC	7 cut(s)	8, 97, 100, 103, 184, 187, 203
TscAI	CASTG	3 cut(s)	399, 646, 891
TseI	GCWGC	2 cut(s)	561, 633
TspDTI	ATGAA	4 cut(s)	110, 504, 513, 692
TspGWI	ACGGA	2 cut(s)	31, 776
TspRI	CASTG	3 cut(s)	399, 646, 891
Tth111I	GACNNNGTC	1 cut(s)	212
Van91I	CCANNNNNTGG	2 cut(s)	115, 629
VpaK11BI	GGWCC	4 cut(s)	214, 219, 361, 465
XceI	RCATGY	1 cut(s)	574
XcmI	CCANNNNNNNNNTGG	1 cut(s)	961
XmiI	GTMKAC	1 cut(s)	428
XspI	CTAG	5 cut(s)	446, 462, 516, 773, 870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.