Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008316

Physical Location & Seq

Genomic Coordinates Forward (+)

17381913 .. 17385205

Gene Structure 3293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG191000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGCCAGGCCTACCCATACCCATGGCCTCGATTTTCGTTCCAGACCCTTCGCTTCTCCGTAACTTCACGGCGGCTCCGTCGAATCTGCTGCTTCTATCTCTCCCCGGCCGGAGGCCGTTCTCGGTGTCCGTCGCCACGTGTCCAAACTTGGGGCTAGGGAGGTCCTTCGCCGTCTCCGGCGCCGCTAGCGACACCTTCTTGGCTAATTCGTCCAAAAATGGAGTTCTTACAGTTGGTGATTTCATGACTAGAAGAGAGGATTTGCATGTGGTGAATCCTACCACAACTGTAGATGAAGCTATAGAGCTTCTTGTGGAAAACAGAATCACTGGTTTTCCGGTGATCGACAGTGACTGGAAATTGGTCGGTCTTGTTTCAGATTATGACTTGTTAGCATTGGACACAATATCAGGTGGTTGTGGAAAAACTGACAACAGCATGTTTCCTGAAGTTGACAGCTCTTGGAAAACTTTTAATGAGGTACAGAAGTTGCTCAGTAAAACCAATGGCCAGGTGGTGGGCGATGTGATGACACCAGCTCCAGTTGTTGTTCGTGAAACCACTAATCTTGAGGATGTTGCTAGGTTATTGCTTGAAACAAAATATCGCCGACTTCCAGTTGTAGACGACAGCGGTAAACTGGTTGGGATTATTACAAGGGGGAACATCATAAGAGCTGCCCTTCAAATGAAACATGCAAGTGAAATGAAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0019725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

238

Amino Acids

25.7

Weight (kDa)

5.46

Isoelectric Point (pI)

37.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	78 - 132	4.1e-14	CBS domain
CBS	PF00571	173 - 227	7.8e-19	CBS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36910
fragaria_vesca	FvH4_1g16360 FvH4_1g16360
malus_domestica	MD02G1176100.v1.1 MD15G1286500.v1.1
prunus_persica	Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1
pyrus_communis	pycom02g14220 pycom15g24980
rosa_chinensis	RchiOBHm_Chr2g0106231
rosa_laevigata	RLG00000017481
rosa_multiflora	Rmu_sc0008603.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137350
rosa_rugosa	Rorug02G0133700
rosa_samantha	Rh2AG184700 Rh2BG195100 Rh2CG189800 Rh2DG191000
rosa_wichuraiana	Rw2G014420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	179
AccB7I	CCANNNNNTGG	1 cut(s)	517
AccI	GTMKAC	1 cut(s)	624
AciI	CCGC	3 cut(s)	71, 183, 633
AcoI	YGGCCR	2 cut(s)	106, 508
AcuI	CTGAAG	1 cut(s)	468
AcvI	CACGTG	1 cut(s)	138
AcyI	GRCGYC	1 cut(s)	180
AfaI	GTAC	1 cut(s)	483
AfiI	CCNNNNNNNGG	3 cut(s)	111, 149, 517
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	2 cut(s)	596, 686
AjnI	CCWGG	2 cut(s)	4, 510
AluBI	AGCT	5 cut(s)	299, 307, 459, 539, 677
AluI	AGCT	5 cut(s)	299, 307, 459, 539, 677
Alw26I	GTCTC	1 cut(s)	178
AlwNI	CAGNNNCTG	1 cut(s)	354
AoxI	GGCC	5 cut(s)	7, 24, 106, 113, 508
ApeKI	GCWGC	2 cut(s)	88, 677
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	162
AsuC2I	CCSGG	1 cut(s)	105
AsuHPI	GGTGA	3 cut(s)	248, 283, 352
AsuNHI	GCTAGC	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	162
BaeI	ACNNNNGTAYC	2 cut(s)	473, 506
BalI	TGGCCA	1 cut(s)	510
BanI	GGYRCC	1 cut(s)	179
BbrPI	CACGTG	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	75, 664
BceAI	ACGGC	3 cut(s)	84, 100, 155
BcgI	CGANNNNNNTGC	2 cut(s)	70, 104
BciT130I	CCWGG	2 cut(s)	6, 512
BcnI	CCSGG	1 cut(s)	105
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	4 cut(s)	155, 186, 249, 582
BfmI	CTRYAG	2 cut(s)	288, 300
BfoI	RGCGCY	1 cut(s)	183
BisI	GCNGC	4 cut(s)	72, 89, 183, 678
BlsI	GCNGC	4 cut(s)	73, 90, 184, 679
Bme1390I	CCNGG	3 cut(s)	6, 105, 512
Bme18I	GGWCC	1 cut(s)	162
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	2 cut(s)	75, 181
BmrFI	CCNGG	3 cut(s)	6, 105, 512
BmtI	GCTAGC	1 cut(s)	189
BpmI	CTGGAG	1 cut(s)	525
BpuEI	CTTGAG	1 cut(s)	590
BpuMI	CCSGG	1 cut(s)	105
BsaAI	YACGTR	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	21, 103
BsaWI	WCCGGW	1 cut(s)	337
BsaXI	ACNNNNNCTCC	4 cut(s)	58, 88, 523, 553
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 149, 517
Bse1I	ACTGG	5 cut(s)	334, 359, 542, 617, 645
BseBI	CCWGG	2 cut(s)	6, 512
BseDI	CCNNGG	2 cut(s)	21, 103
BseGI	GGATG	1 cut(s)	580
BseLI	CCNNNNNNNGG	3 cut(s)	111, 149, 517
BseMII	CTCAG	1 cut(s)	508
BseNI	ACTGG	5 cut(s)	334, 359, 542, 617, 645
BseX3I	CGGCCG	1 cut(s)	106
BseXI	GCAGC	2 cut(s)	75, 664
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	5 cut(s)	9, 26, 108, 115, 510
BshNI	GGYRCC	1 cut(s)	179
BsiEI	CGRYCG	1 cut(s)	109
BsiSI	CCGG	4 cut(s)	105, 109, 177, 338
BslI	CCNNNNNNNGG	3 cut(s)	111, 149, 517
BsmAI	GTCTC	1 cut(s)	178
BsmBI	CGTCTC	1 cut(s)	178
BsnI	GGCC	5 cut(s)	9, 26, 108, 115, 510
Bsp143I	GATC	1 cut(s)	342
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	3 cut(s)	71, 183, 633
BspANI	GGCC	5 cut(s)	9, 26, 108, 115, 510
BspCNI	CTCAG	1 cut(s)	507
BspHI	TCATGA	1 cut(s)	243
BspLI	GGNNCC	2 cut(s)	75, 181
BspOI	GCTAGC	1 cut(s)	189
BspT107I	GGYRCC	1 cut(s)	179
BsrI	ACTGG	5 cut(s)	334, 359, 542, 617, 645
BssECI	CCNNGG	2 cut(s)	21, 103
BssMI	GATC	1 cut(s)	342
BssNI	GRCGYC	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	21
Bst2UI	CCWGG	2 cut(s)	6, 512
Bst4CI	ACNGT	3 cut(s)	232, 289, 350
Bst6I	CTCTTC	1 cut(s)	247
BstACI	GRCGYC	1 cut(s)	180
BstBAI	YACGTR	1 cut(s)	138
BstC8I	GCNNGC	1 cut(s)	187
BstDEI	CTNAG	1 cut(s)	494
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	580
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	1 cut(s)	345
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	1 cut(s)	342
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	1 cut(s)	186
BstNI	CCWGG	2 cut(s)	6, 512
BstNSI	RCATGY	3 cut(s)	269, 442, 698
BstSCI	CCNGG	3 cut(s)	4, 103, 510
BstSFI	CTRYAG	2 cut(s)	288, 300
BstV1I	GCAGC	2 cut(s)	75, 664
BstXI	CCANNNNNNTGG	1 cut(s)	22
BstZI	CGGCCG	1 cut(s)	106
BsuRI	GGCC	5 cut(s)	9, 26, 108, 115, 510
BtgI	CCRYGG	1 cut(s)	21
BtgZI	GCGATG	1 cut(s)	537
BtsCI	GGATG	1 cut(s)	580
BtsIMutI	CAGTG	2 cut(s)	327, 355
Cac8I	GCNNGC	1 cut(s)	187
CaiI	CAGNNNCTG	1 cut(s)	354
CciI	TCATGA	1 cut(s)	243
CfoI	GCGC	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	162
Csp6I	GTAC	1 cut(s)	482
CspCI	CAANNNNNGTGG	2 cut(s)	550, 585
CviAII	CATG	5 cut(s)	22, 244, 266, 439, 695
CviQI	GTAC	1 cut(s)	482
DdeI	CTNAG	1 cut(s)	494
DinI	GGCGCC	1 cut(s)	181
DpnI	GATC	1 cut(s)	344
DpnII	GATC	1 cut(s)	342
EaeI	YGGCCR	2 cut(s)	106, 508
EagI	CGGCCG	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	247
EarI	CTCTTC	1 cut(s)	247
EclXI	CGGCCG	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	21
Eco147I	AGGCCT	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	162
Eco52I	CGGCCG	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	468
Eco72I	CACGTG	1 cut(s)	138
EcoO109I	RGGNCCY	1 cut(s)	162
EcoRII	CCWGG	2 cut(s)	4, 510
EcoT14I	CCWWGG	1 cut(s)	21
EgeI	GGCGCC	1 cut(s)	181
EheI	GGCGCC	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	21
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	5 cut(s)	25, 247, 269, 442, 698
FatI	CATG	5 cut(s)	21, 243, 265, 438, 694
FblI	GTMKAC	1 cut(s)	624
Fnu4HI	GCNGC	4 cut(s)	72, 89, 183, 678
FokI	GGATG	1 cut(s)	587
Fsp4HI	GCNGC	4 cut(s)	72, 89, 183, 678
FspBI	CTAG	4 cut(s)	155, 186, 249, 582
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	4 cut(s)	72, 89, 183, 678
GsuI	CTGGAG	1 cut(s)	525
HaeII	RGCGCY	1 cut(s)	183
HaeIII	GGCC	5 cut(s)	9, 26, 108, 115, 510
HapII	CCGG	4 cut(s)	105, 109, 177, 338
HhaI	GCGC	1 cut(s)	182
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	5 cut(s)	25, 247, 269, 442, 698
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HinfI	GANTC	3 cut(s)	82, 274, 324
HpaII	CCGG	4 cut(s)	105, 109, 177, 338
HphI	GGTGA	3 cut(s)	248, 283, 352
Hpy166II	GTNNAC	3 cut(s)	454, 625, 638
Hpy188I	TCNGA	1 cut(s)	379
Hpy188III	TCNNGA	5 cut(s)	41, 244, 446, 554, 569
Hpy8I	GTNNAC	3 cut(s)	454, 625, 638
Hpy99I	CGWCG	2 cut(s)	82, 134
HpyAV	CCTTC	4 cut(s)	57, 175, 205, 692
HpyCH4III	ACNGT	3 cut(s)	232, 289, 350
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	2 cut(s)	265, 698
HpyF10VI	GCNNNNNNNGC	1 cut(s)	186
HpyF3I	CTNAG	1 cut(s)	494
HpySE526I	ACGT	1 cut(s)	137
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	5 cut(s)	25, 247, 269, 442, 698
HspAI	GCGC	1 cut(s)	180
KasI	GGCGCC	1 cut(s)	179
Kzo9I	GATC	1 cut(s)	342
LmnI	GCTCC	2 cut(s)	79, 544
Lsp1109I	GCAGC	2 cut(s)	75, 664
MaeI	CTAG	4 cut(s)	155, 186, 249, 582
MaeII	ACGT	1 cut(s)	137
MaeIII	GTNAC	2 cut(s)	59, 350
MalI	GATC	1 cut(s)	344
MboI	GATC	1 cut(s)	342
MboII	GAAGA	1 cut(s)	264
MlsI	TGGCCA	1 cut(s)	510
MluCI	AATT	2 cut(s)	205, 359
MluNI	TGGCCA	1 cut(s)	510
Mly113I	GGCGCC	1 cut(s)	180
MnlI	CCTC	6 cut(s)	37, 105, 153, 250, 472, 565
Mox20I	TGGCCA	1 cut(s)	510
MscI	TGGCCA	1 cut(s)	510
MseI	TTAA	1 cut(s)	474
MslI	CAYNNNNRTG	2 cut(s)	20, 699
Msp20I	TGGCCA	1 cut(s)	510
MspA1I	CMGCKG	1 cut(s)	633
MspI	CCGG	4 cut(s)	105, 109, 177, 338
MspR9I	CCNGG	3 cut(s)	6, 105, 512
MvaI	CCWGG	2 cut(s)	6, 512
MwoI	GCNNNNNNNGC	1 cut(s)	186
NarI	GGCGCC	1 cut(s)	180
NciI	CCSGG	1 cut(s)	105
NcoI	CCATGG	1 cut(s)	21
NdeII	GATC	1 cut(s)	342
NheI	GCTAGC	1 cut(s)	185
NlaIII	CATG	5 cut(s)	25, 247, 269, 442, 698
NlaIV	GGNNCC	2 cut(s)	75, 181
NmuCI	GTSAC	1 cut(s)	350
NspI	RCATGY	3 cut(s)	269, 442, 698
PagI	TCATGA	1 cut(s)	243
PceI	AGGCCT	1 cut(s)	9
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PfeI	GAWTC	3 cut(s)	82, 274, 324
PflMI	CCANNNNNTGG	1 cut(s)	517
PkrI	GCNGC	4 cut(s)	73, 90, 184, 679
PluTI	GGCGCC	1 cut(s)	183
PmaCI	CACGTG	1 cut(s)	138
PmlI	CACGTG	1 cut(s)	138
Ppu21I	YACGTR	1 cut(s)	138
PpuMI	RGGWCCY	1 cut(s)	162
Psp5II	RGGWCCY	1 cut(s)	162
Psp6I	CCWGG	2 cut(s)	4, 510
PspCI	CACGTG	1 cut(s)	138
PspGI	CCWGG	2 cut(s)	4, 510
PspN4I	GGNNCC	2 cut(s)	75, 181
PspPI	GGNCC	1 cut(s)	162
PspPPI	RGGWCCY	1 cut(s)	162
PstNI	CAGNNNCTG	1 cut(s)	354
RsaI	GTAC	1 cut(s)	483
RsaNI	GTAC	1 cut(s)	482
RseI	CAYNNNNRTG	2 cut(s)	20, 699
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	4 cut(s)	72, 89, 183, 678
Sau3AI	GATC	1 cut(s)	342
Sau96I	GGNCC	1 cut(s)	162
ScrFI	CCNGG	3 cut(s)	6, 105, 512
SfcI	CTRYAG	2 cut(s)	288, 300
SfoI	GGCGCC	1 cut(s)	181
SinI	GGWCC	1 cut(s)	162
SmiMI	CAYNNNNRTG	2 cut(s)	20, 699
SmlI	CTYRAG	1 cut(s)	569
SmoI	CTYRAG	1 cut(s)	569
Sse9I	AATT	2 cut(s)	205, 359
SseBI	AGGCCT	1 cut(s)	9
SsiI	CCGC	3 cut(s)	71, 183, 633
SspDI	GGCGCC	1 cut(s)	179
SspMI	CTAG	4 cut(s)	155, 186, 249, 582
StuI	AGGCCT	1 cut(s)	9
StyD4I	CCNGG	3 cut(s)	4, 103, 510
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	3 cut(s)	232, 289, 350
TaiI	ACGT	1 cut(s)	140
TaqI	TCGA	3 cut(s)	29, 80, 345
TaqII	GACCGA	1 cut(s)	356
TasI	AATT	2 cut(s)	205, 359
TauI	GCSGC	2 cut(s)	74, 185
TfiI	GAWTC	3 cut(s)	82, 274, 324
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TscAI	CASTG	2 cut(s)	334, 355
TseFI	GTSAC	1 cut(s)	350
TseI	GCWGC	2 cut(s)	88, 677
Tsp45I	GTSAC	1 cut(s)	350
TspDTI	ATGAA	3 cut(s)	232, 309, 704
TspGWI	ACGGA	3 cut(s)	47, 66, 118
TspRI	CASTG	2 cut(s)	334, 355
Van91I	CCANNNNNTGG	1 cut(s)	517
VpaK11BI	GGWCC	1 cut(s)	162
XceI	RCATGY	3 cut(s)	269, 442, 698
XcmI	CCANNNNNNNNNTGG	1 cut(s)	511
XmiI	GTMKAC	1 cut(s)	624
XspI	CTAG	4 cut(s)	155, 186, 249, 582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.