Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008603.1

Orthogroup ID

OG0008316

Physical Location & Seq

Genomic Coordinates Forward (+)

64512 .. 68072

Gene Structure 3561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008603.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

atgaaaaaaacaagtgtggtttgtaaaaacattgggcgtcaattctatatattgacctacttcagagtttgccctttgtcctcttattcaatcccaagatgcgacgacgtgcgtttccataccccaacggcatcgcacccgccgtcgtgcattagaccgccacgggtgcactgccagctcagcaaatttaattcttttaacagctggccacccccgcggtctctatcccagggcggttactcttcggcaaaaacaaaaccccctcccatttcatttctactcactcctcactccctcaccggaaagcccatacccatggcctcgattttcgttccagacccttcgcttctccttaacttcacggcggctccgtcgaatcggctgcttctatctctccccggccggaggccgttctcggtgtccgtcgccacgtgtccaaatttggggctagggaggtccttcgccgtctccggcgccgctagcgacaccttcatggctaattcgtccaaaaatggagttcttacagttggtgatttcatgactagaagagaggatttgcatgtggtgaatcctaccacaactgtagatgaagctatagagcttcttgtggaaaacagaatcactggttttccggtgatcgacagtgactggaaattggtcggtcttgtttcagattatgacttgttagcattggacacaatatcaggtggttgtggaaaaactgacaacagcatgtttcctgaagttgacagctcttggaaaacttttaatgaggtacagaagttgctcagtaaaaccaatggccaggtggtgggcgatgtgatgacaccagctccagttgttgttcgtgaaaccactaatcttgaggatgttgctaggttattgcttgaaacaaaatatcgccgacttccagttgtagacgacagcggtaaactggttggaattattacaagggggaacatcataagagctgcccttcaaatgaaacatgcaagtgaaatgaaaatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0019725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

336

Amino Acids

36.78

Weight (kDa)

9.25

Isoelectric Point (pI)

37.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36910
fragaria_vesca	FvH4_1g16360 FvH4_1g16360
malus_domestica	MD02G1176100.v1.1 MD15G1286500.v1.1
prunus_persica	Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1
pyrus_communis	pycom02g14220 pycom15g24980
rosa_chinensis	RchiOBHm_Chr2g0106231
rosa_laevigata	RLG00000017481
rosa_multiflora	Rmu_sc0008603.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137350
rosa_rugosa	Rorug02G0133700
rosa_samantha	Rh2AG184700 Rh2BG195100 Rh2CG189800 Rh2DG191000
rosa_wichuraiana	Rw2G014420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	473
AccB7I	CCANNNNNTGG	1 cut(s)	811
AccI	GTMKAC	1 cut(s)	918
AccII	CGCG	1 cut(s)	217
AciI	CCGC	8 cut(s)	140, 158, 215, 217, 234, 365, 477, 927
AcoI	YGGCCR	3 cut(s)	206, 400, 802
AcsI	RAATTY	2 cut(s)	185, 439
AcuI	CTGAAG	2 cut(s)	46, 762
AcvI	CACGTG	1 cut(s)	432
AcyI	GRCGYC	2 cut(s)	37, 474
AfaI	GTAC	1 cut(s)	777
AfiI	CCNNNNNNNGG	3 cut(s)	405, 443, 811
AflIII	ACRYGT	1 cut(s)	431
AgsI	TTSAA	3 cut(s)	90, 890, 980
AjiI	CACGTC	1 cut(s)	109
AjnI	CCWGG	2 cut(s)	228, 804
AluBI	AGCT	7 cut(s)	178, 204, 593, 601, 753, 833, 971
AluI	AGCT	7 cut(s)	178, 204, 593, 601, 753, 833, 971
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	2 cut(s)	225, 472
Alw44I	GTGCAC	1 cut(s)	167
AlwNI	CAGNNNCTG	1 cut(s)	648
AoxI	GGCC	5 cut(s)	206, 318, 400, 407, 802
ApaLI	GTGCAC	1 cut(s)	167
ApeKI	GCWGC	2 cut(s)	382, 971
ApoI	RAATTY	2 cut(s)	185, 439
AspLEI	GCGC	1 cut(s)	476
AspS9I	GGNCC	1 cut(s)	456
AsuC2I	CCSGG	1 cut(s)	399
AsuHPI	GGTGA	4 cut(s)	289, 542, 577, 646
AsuNHI	GCTAGC	1 cut(s)	479
AvaII	GGWCC	1 cut(s)	456
BaeGI	GKGCMC	1 cut(s)	171
BaeI	ACNNNNGTAYC	2 cut(s)	767, 800
BalI	TGGCCA	2 cut(s)	208, 804
BanI	GGYRCC	1 cut(s)	473
BbrPI	CACGTG	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	369, 958
BceAI	ACGGC	5 cut(s)	127, 144, 378, 394, 449
BcgI	CGANNNNNNTGC	2 cut(s)	364, 398
BciT130I	CCWGG	2 cut(s)	230, 806
BcnI	CCSGG	1 cut(s)	399
BcoDI	GTCTC	2 cut(s)	225, 472
BfaI	CTAG	4 cut(s)	449, 480, 543, 876
BfmI	CTRYAG	2 cut(s)	582, 594
BfoI	RGCGCY	1 cut(s)	477
BisI	GCNGC	4 cut(s)	366, 383, 477, 972
BlpI	GCTNAGC	1 cut(s)	179
BlsI	GCNGC	4 cut(s)	367, 384, 478, 973
Bme1390I	CCNGG	3 cut(s)	230, 399, 806
Bme18I	GGWCC	1 cut(s)	456
BmgBI	CACGTC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	456
BmiI	GGNNCC	2 cut(s)	369, 475
BmrFI	CCNGG	3 cut(s)	230, 399, 806
BmsI	GCATC	2 cut(s)	89, 140
BmtI	GCTAGC	1 cut(s)	483
BpmI	CTGGAG	1 cut(s)	819
Bpu1102I	GCTNAGC	1 cut(s)	179
BpuEI	CTTGAG	1 cut(s)	884
BpuMI	CCSGG	1 cut(s)	399
BsaAI	YACGTR	1 cut(s)	432
BsaHI	GRCGYC	2 cut(s)	37, 474
BsaI	GGTCTC	1 cut(s)	225
BsaJI	CCNNGG	6 cut(s)	161, 215, 228, 229, 315, 397
BsaWI	WCCGGW	2 cut(s)	299, 631
BsaXI	ACNNNNNCTCC	4 cut(s)	352, 382, 817, 847
Bsc4I	CCNNNNNNNGG	3 cut(s)	405, 443, 811
Bse1I	ACTGG	5 cut(s)	628, 653, 836, 911, 939
BseBI	CCWGG	2 cut(s)	230, 806
BseDI	CCNNGG	6 cut(s)	161, 215, 228, 229, 315, 397
BseGI	GGATG	1 cut(s)	874
BseLI	CCNNNNNNNGG	3 cut(s)	405, 443, 811
BseMII	CTCAG	2 cut(s)	193, 802
BseNI	ACTGG	5 cut(s)	628, 653, 836, 911, 939
BseRI	GAGGAG	1 cut(s)	276
BseSI	GKGCMC	1 cut(s)	171
BseX3I	CGGCCG	1 cut(s)	400
BseXI	GCAGC	2 cut(s)	369, 958
Bsh1236I	CGCG	1 cut(s)	217
Bsh1285I	CGRYCG	1 cut(s)	403
BshFI	GGCC	5 cut(s)	208, 320, 402, 409, 804
BshNI	GGYRCC	1 cut(s)	473
BsiEI	CGRYCG	1 cut(s)	403
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	5 cut(s)	300, 399, 403, 471, 632
BslI	CCNNNNNNNGG	3 cut(s)	405, 443, 811
BsmAI	GTCTC	2 cut(s)	225, 472
BsmBI	CGTCTC	1 cut(s)	472
BsnI	GGCC	5 cut(s)	208, 320, 402, 409, 804
Bso31I	GGTCTC	1 cut(s)	225
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	1 cut(s)	636
Bsp1720I	GCTNAGC	1 cut(s)	179
Bsp19I	CCATGG	1 cut(s)	315
BspACI	CCGC	8 cut(s)	140, 158, 215, 217, 234, 365, 477, 927
BspANI	GGCC	5 cut(s)	208, 320, 402, 409, 804
BspCNI	CTCAG	2 cut(s)	192, 801
BspFNI	CGCG	1 cut(s)	217
BspHI	TCATGA	1 cut(s)	537
BspLI	GGNNCC	2 cut(s)	369, 475
BspOI	GCTAGC	1 cut(s)	483
BspT107I	GGYRCC	1 cut(s)	473
BspTNI	GGTCTC	1 cut(s)	225
BsrI	ACTGG	5 cut(s)	628, 653, 836, 911, 939
BssECI	CCNNGG	6 cut(s)	161, 215, 228, 229, 315, 397
BssMI	GATC	1 cut(s)	636
BssNI	GRCGYC	2 cut(s)	37, 474
BssT1I	CCWWGG	1 cut(s)	315
Bst2UI	CCWGG	2 cut(s)	230, 806
Bst4CI	ACNGT	3 cut(s)	526, 583, 644
Bst6I	CTCTTC	2 cut(s)	247, 541
BstACI	GRCGYC	2 cut(s)	37, 474
BstBAI	YACGTR	1 cut(s)	432
BstC8I	GCNNGC	3 cut(s)	176, 206, 481
BstDEI	CTNAG	2 cut(s)	179, 788
BstDSI	CCRYGG	3 cut(s)	161, 215, 315
BstF5I	GGATG	1 cut(s)	874
BstFNI	CGCG	1 cut(s)	217
BstH2I	RGCGCY	1 cut(s)	477
BstHHI	GCGC	1 cut(s)	476
BstKTI	GATC	1 cut(s)	639
BstMAI	GTCTC	2 cut(s)	225, 472
BstMBI	GATC	1 cut(s)	636
BstMCI	CGRYCG	1 cut(s)	403
BstMWI	GCNNNNNNNGC	5 cut(s)	166, 175, 180, 214, 480
BstNI	CCWGG	2 cut(s)	230, 806
BstNSI	RCATGY	3 cut(s)	563, 736, 992
BstSCI	CCNGG	3 cut(s)	228, 397, 804
BstSFI	CTRYAG	2 cut(s)	582, 594
BstSLI	GKGCMC	1 cut(s)	171
BstUI	CGCG	1 cut(s)	217
BstV1I	GCAGC	2 cut(s)	369, 958
BstXI	CCANNNNNNTGG	1 cut(s)	316
BstZI	CGGCCG	1 cut(s)	400
BsuRI	GGCC	5 cut(s)	208, 320, 402, 409, 804
BtgI	CCRYGG	3 cut(s)	161, 215, 315
BtgZI	GCGATG	2 cut(s)	117, 831
BtrI	CACGTC	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	874
BtsI	GCAGTG	1 cut(s)	169
BtsIMutI	CAGTG	3 cut(s)	169, 621, 649
Cac8I	GCNNGC	3 cut(s)	176, 206, 481
CaiI	CAGNNNCTG	1 cut(s)	648
CciI	TCATGA	1 cut(s)	537
CfoI	GCGC	1 cut(s)	476
Cfr13I	GGNCC	1 cut(s)	456
Cfr42I	CCGCGG	1 cut(s)	218
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	776
CspCI	CAANNNNNGTGG	2 cut(s)	844, 879
CviAII	CATG	6 cut(s)	316, 493, 538, 560, 733, 989
CviQI	GTAC	1 cut(s)	776
DdeI	CTNAG	2 cut(s)	179, 788
DinI	GGCGCC	1 cut(s)	475
DpnI	GATC	1 cut(s)	638
DpnII	GATC	1 cut(s)	636
EaeI	YGGCCR	3 cut(s)	206, 400, 802
EagI	CGGCCG	1 cut(s)	400
Eam1104I	CTCTTC	2 cut(s)	247, 541
EarI	CTCTTC	2 cut(s)	247, 541
EclXI	CGGCCG	1 cut(s)	400
Eco130I	CCWWGG	1 cut(s)	315
Eco31I	GGTCTC	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	456
Eco52I	CGGCCG	1 cut(s)	400
Eco57I	CTGAAG	2 cut(s)	46, 762
Eco72I	CACGTG	1 cut(s)	432
EcoO109I	RGGNCCY	1 cut(s)	456
EcoRII	CCWGG	2 cut(s)	228, 804
EcoT14I	CCWWGG	1 cut(s)	315
EgeI	GGCGCC	1 cut(s)	475
EheI	GGCGCC	1 cut(s)	475
ErhI	CCWWGG	1 cut(s)	315
Esp3I	CGTCTC	1 cut(s)	472
FaeI	CATG	6 cut(s)	319, 496, 541, 563, 736, 992
FatI	CATG	6 cut(s)	315, 492, 537, 559, 732, 988
FauI	CCCGC	2 cut(s)	147, 222
FblI	GTMKAC	1 cut(s)	918
Fnu4HI	GCNGC	4 cut(s)	366, 383, 477, 972
FokI	GGATG	1 cut(s)	881
Fsp4HI	GCNGC	4 cut(s)	366, 383, 477, 972
FspBI	CTAG	4 cut(s)	449, 480, 543, 876
GlaI	GCGC	1 cut(s)	475
GluI	GCNGC	4 cut(s)	366, 383, 477, 972
GsuI	CTGGAG	1 cut(s)	819
HaeII	RGCGCY	1 cut(s)	477
HaeIII	GGCC	5 cut(s)	208, 320, 402, 409, 804
HapII	CCGG	5 cut(s)	300, 399, 403, 471, 632
HgaI	GACGC	1 cut(s)	26
HhaI	GCGC	1 cut(s)	476
Hin1I	GRCGYC	2 cut(s)	37, 474
Hin1II	CATG	6 cut(s)	319, 496, 541, 563, 736, 992
Hin6I	GCGC	1 cut(s)	474
HinP1I	GCGC	1 cut(s)	474
HincII	GTYRAC	1 cut(s)	748
HindII	GTYRAC	1 cut(s)	748
HinfI	GANTC	3 cut(s)	376, 568, 618
HpaII	CCGG	5 cut(s)	300, 399, 403, 471, 632
HphI	GGTGA	4 cut(s)	289, 542, 577, 646
Hpy166II	GTNNAC	4 cut(s)	169, 748, 919, 932
Hpy188I	TCNGA	2 cut(s)	65, 673
Hpy188III	TCNNGA	5 cut(s)	335, 538, 740, 848, 863
Hpy8I	GTNNAC	4 cut(s)	169, 748, 919, 932
Hpy99I	CGWCG	5 cut(s)	107, 110, 148, 376, 428
HpyAV	CCTTC	4 cut(s)	351, 469, 499, 986
HpyCH4III	ACNGT	3 cut(s)	526, 583, 644
HpyCH4IV	ACGT	2 cut(s)	108, 431
HpyCH4V	TGCA	4 cut(s)	150, 169, 559, 992
HpyF10VI	GCNNNNNNNGC	5 cut(s)	166, 175, 180, 214, 480
HpyF3I	CTNAG	2 cut(s)	179, 788
HpySE526I	ACGT	2 cut(s)	108, 431
Hsp92I	GRCGYC	2 cut(s)	37, 474
Hsp92II	CATG	6 cut(s)	319, 496, 541, 563, 736, 992
HspAI	GCGC	1 cut(s)	474
KasI	GGCGCC	1 cut(s)	473
KspI	CCGCGG	1 cut(s)	218
Kzo9I	GATC	1 cut(s)	636
LmnI	GCTCC	2 cut(s)	373, 838
Lsp1109I	GCAGC	2 cut(s)	369, 958
LweI	GCATC	2 cut(s)	89, 140
MaeI	CTAG	4 cut(s)	449, 480, 543, 876
MaeII	ACGT	2 cut(s)	108, 431
MaeIII	GTNAC	2 cut(s)	236, 644
MalI	GATC	1 cut(s)	638
MboI	GATC	1 cut(s)	636
MboII	GAAGA	2 cut(s)	234, 558
MhlI	GDGCHC	1 cut(s)	171
MlsI	TGGCCA	2 cut(s)	208, 804
MluCI	AATT	7 cut(s)	41, 185, 190, 439, 499, 653, 942
MluNI	TGGCCA	2 cut(s)	208, 804
Mly113I	GGCGCC	1 cut(s)	474
MmeI	TCCRAC	1 cut(s)	919
Mox20I	TGGCCA	2 cut(s)	208, 804
MscI	TGGCCA	2 cut(s)	208, 804
MseI	TTAA	4 cut(s)	189, 198, 354, 768
MslI	CAYNNNNRTG	3 cut(s)	314, 491, 993
Msp20I	TGGCCA	2 cut(s)	208, 804
MspA1I	CMGCKG	3 cut(s)	204, 217, 927
MspI	CCGG	5 cut(s)	300, 399, 403, 471, 632
MspR9I	CCNGG	3 cut(s)	230, 399, 806
MvaI	CCWGG	2 cut(s)	230, 806
MvnI	CGCG	1 cut(s)	217
MwoI	GCNNNNNNNGC	5 cut(s)	166, 175, 180, 214, 480
NarI	GGCGCC	1 cut(s)	474
NciI	CCSGG	1 cut(s)	399
NcoI	CCATGG	1 cut(s)	315
NdeII	GATC	1 cut(s)	636
NheI	GCTAGC	1 cut(s)	479
NlaIII	CATG	6 cut(s)	319, 496, 541, 563, 736, 992
NlaIV	GGNNCC	2 cut(s)	369, 475
NmuCI	GTSAC	1 cut(s)	644
NspI	RCATGY	3 cut(s)	563, 736, 992
PagI	TCATGA	1 cut(s)	537
PasI	CCCWGGG	1 cut(s)	229
PcsI	WCGNNNNNNNCGW	2 cut(s)	140, 368
PfeI	GAWTC	3 cut(s)	376, 568, 618
PflMI	CCANNNNNTGG	1 cut(s)	811
PkrI	GCNGC	4 cut(s)	367, 384, 478, 973
PluTI	GGCGCC	1 cut(s)	477
PmaCI	CACGTG	1 cut(s)	432
PmlI	CACGTG	1 cut(s)	432
Ppu21I	YACGTR	1 cut(s)	432
PpuMI	RGGWCCY	1 cut(s)	456
Psp5II	RGGWCCY	1 cut(s)	456
Psp6I	CCWGG	2 cut(s)	228, 804
PspCI	CACGTG	1 cut(s)	432
PspGI	CCWGG	2 cut(s)	228, 804
PspN4I	GGNNCC	2 cut(s)	369, 475
PspPI	GGNCC	1 cut(s)	456
PspPPI	RGGWCCY	1 cut(s)	456
PstNI	CAGNNNCTG	1 cut(s)	648
PvuII	CAGCTG	1 cut(s)	204
RsaI	GTAC	1 cut(s)	777
RsaNI	GTAC	1 cut(s)	776
RseI	CAYNNNNRTG	3 cut(s)	314, 491, 993
SacII	CCGCGG	1 cut(s)	218
SaqAI	TTAA	4 cut(s)	189, 198, 354, 768
SatI	GCNGC	4 cut(s)	366, 383, 477, 972
Sau3AI	GATC	1 cut(s)	636
Sau96I	GGNCC	1 cut(s)	456
ScrFI	CCNGG	3 cut(s)	230, 399, 806
SduI	GDGCHC	1 cut(s)	171
SfaNI	GCATC	2 cut(s)	89, 140
SfcI	CTRYAG	2 cut(s)	582, 594
SfoI	GGCGCC	1 cut(s)	475
Sfr303I	CCGCGG	1 cut(s)	218
SgrBI	CCGCGG	1 cut(s)	218
SinI	GGWCC	1 cut(s)	456
SmiMI	CAYNNNNRTG	3 cut(s)	314, 491, 993
SmlI	CTYRAG	1 cut(s)	863
SmoI	CTYRAG	1 cut(s)	863
Sse9I	AATT	7 cut(s)	41, 185, 190, 439, 499, 653, 942
SsiI	CCGC	8 cut(s)	140, 158, 215, 217, 234, 365, 477, 927
SspDI	GGCGCC	1 cut(s)	473
SspMI	CTAG	4 cut(s)	449, 480, 543, 876
StyD4I	CCNGG	3 cut(s)	228, 397, 804
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	3 cut(s)	526, 583, 644
TaiI	ACGT	2 cut(s)	111, 434
TaqI	TCGA	3 cut(s)	323, 374, 639
TaqII	GACCGA	1 cut(s)	650
TasI	AATT	7 cut(s)	41, 185, 190, 439, 499, 653, 942
TauI	GCSGC	2 cut(s)	368, 479
TfiI	GAWTC	3 cut(s)	376, 568, 618
Tru1I	TTAA	4 cut(s)	189, 198, 354, 768
Tru9I	TTAA	4 cut(s)	189, 198, 354, 768
TscAI	CASTG	3 cut(s)	176, 628, 649
TseFI	GTSAC	1 cut(s)	644
TseI	GCWGC	2 cut(s)	382, 971
Tsp45I	GTSAC	1 cut(s)	644
TspDTI	ATGAA	6 cut(s)	17, 261, 481, 526, 603, 998
TspGWI	ACGGA	2 cut(s)	360, 412
TspRI	CASTG	3 cut(s)	176, 628, 649
Van91I	CCANNNNNTGG	1 cut(s)	811
VneI	GTGCAC	1 cut(s)	167
VpaK11BI	GGWCC	1 cut(s)	456
XapI	RAATTY	2 cut(s)	185, 439
XceI	RCATGY	3 cut(s)	563, 736, 992
XcmI	CCANNNNNNNNNTGG	1 cut(s)	805
XmiI	GTMKAC	1 cut(s)	918
XspI	CTAG	4 cut(s)	449, 480, 543, 876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.