Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008316

Physical Location & Seq

Genomic Coordinates Forward (+)

26237006 .. 26241142

Gene Structure 4137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1286500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCCTCGATTTTCGTTCCAGAACCTCCGCTCCTCCCTCTCTCTGCGTCTTCCGCTTCTGCTCCGGCCAATCGGCTGCAGTGCTTGCCGCTGCTATCTCGTCCGGGTCGGAGGCTCTTCCCGATTTACGTCGCCGCTTCGGGTCTTCGGAGGTCCTTCAATGTAGCCGCCGGCGCCACCTTCATGCCTAATTCCGTACCGGAGAAAACTGGAGTTTTCACGGTTGGCGATTTTATGACGAGAAGAGAGGATTTGCACGTGGTGAAGCCTACAACGACTGTGGATGAAGCTATAGAGCTTCTTGTCGAAAACAGAATCACTGGTTTTCCGGTGATAGACGATGACTGGAAATTGATCGGTCTTGTCTCAGACTATGACTTGTTAGCACTGGACACTATCTCAGGTAGCGGAAGAACTGACAACAGCATGTTTCCAGAAGTTGACAGCAGTTGGAAAACTTTTAACGAGGTACAGAACTTGCTCAGTAAAACCAATGGTCGGGTGGTGGGTGATGTGATGACACCAGCCCCAGTTGTTGTTAGTGAAACGACTAATCTTGGGGATGTTGCTAGATTATTGCTGGAGACAAAATATCGCAGACTTCCAGTTGTAAATGAAAGCGGCAAGCTGATAGGAATTATTACAAGAGGAAACATCATACGAGCTGCCCTTCAAATGAAACATGCTAGTGAATTGAAAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0019725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

235

Amino Acids

25.49

Weight (kDa)

6.75

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	75 - 129	2.1e-14	CBS domain
CBS	PF00571	169 - 223	3.6e-18	CBS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36910
fragaria_vesca	FvH4_1g16360 FvH4_1g16360
malus_domestica	MD02G1176100.v1.1 MD15G1286500.v1.1
prunus_persica	Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1
pyrus_communis	pycom02g14220 pycom15g24980
rosa_chinensis	RchiOBHm_Chr2g0106231
rosa_laevigata	RLG00000017481
rosa_multiflora	Rmu_sc0008603.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137350
rosa_rugosa	Rorug02G0133700
rosa_samantha	Rh2AG184700 Rh2BG195100 Rh2CG189800 Rh2DG191000
rosa_wichuraiana	Rw2G014420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	173
AccBSI	CCGCTC	1 cut(s)	31
AciI	CCGC	7 cut(s)	29, 54, 89, 135, 168, 408, 621
AcoI	YGGCCR	1 cut(s)	66
AcvI	CACGTG	1 cut(s)	259
AcyI	GRCGYC	1 cut(s)	174
AdeI	CACNNNGTG	1 cut(s)	262
AfaI	GTAC	2 cut(s)	198, 471
AfiI	CCNNNNNNNGG	1 cut(s)	498
AgsI	TTSAA	3 cut(s)	160, 674, 697
AloI	GAACNNNNNNTCC	2 cut(s)	15, 47
AluBI	AGCT	4 cut(s)	290, 298, 628, 665
AluI	AGCT	4 cut(s)	290, 298, 628, 665
Alw26I	GTCTC	2 cut(s)	370, 578
AoxI	GGCC	2 cut(s)	3, 66
ApeKI	GCWGC	3 cut(s)	76, 91, 665
AspLEI	GCGC	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	153
AsuC2I	CCSGG	1 cut(s)	105
AsuHPI	GGTGA	3 cut(s)	274, 343, 521
AvaII	GGWCC	1 cut(s)	153
BanI	GGYRCC	1 cut(s)	173
BbrPI	CACGTG	1 cut(s)	259
BbsI	GAAGAC	2 cut(s)	42, 137
BbvI	GCAGC	3 cut(s)	63, 78, 652
BcnI	CCSGG	1 cut(s)	105
BcoDI	GTCTC	2 cut(s)	370, 578
BfaI	CTAG	2 cut(s)	570, 687
BfmI	CTRYAG	2 cut(s)	77, 291
BfoI	RGCGCY	1 cut(s)	177
BisI	GCNGC	7 cut(s)	77, 89, 92, 135, 168, 622, 666
BlsI	GCNGC	7 cut(s)	78, 90, 93, 136, 169, 623, 667
Bme1390I	CCNGG	1 cut(s)	105
Bme18I	GGWCC	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	105
BmrI	ACTGGG	1 cut(s)	524
BmuI	ACTGGG	1 cut(s)	524
BpiI	GAAGAC	2 cut(s)	42, 137
BpmI	CTGGAG	2 cut(s)	231, 602
BpuMI	CCSGG	1 cut(s)	105
BsaAI	YACGTR	1 cut(s)	259
BsaHI	GRCGYC	1 cut(s)	174
BsaWI	WCCGGW	2 cut(s)	199, 328
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	1 cut(s)	498
Bse118I	RCCGGY	1 cut(s)	170
Bse1I	ACTGG	6 cut(s)	214, 325, 350, 393, 530, 605
BseGI	GGATG	2 cut(s)	289, 568
BseLI	CCNNNNNNNGG	1 cut(s)	498
BseMII	CTCAG	3 cut(s)	381, 414, 496
BseNI	ACTGG	6 cut(s)	214, 325, 350, 393, 530, 605
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	3 cut(s)	63, 78, 652
BshFI	GGCC	2 cut(s)	5, 68
BshNI	GGYRCC	1 cut(s)	173
BsiSI	CCGG	5 cut(s)	65, 104, 171, 200, 329
BslI	CCNNNNNNNGG	1 cut(s)	498
BsmAI	GTCTC	2 cut(s)	370, 578
BsnI	GGCC	2 cut(s)	5, 68
Bsp143I	GATC	1 cut(s)	354
BspACI	CCGC	7 cut(s)	29, 54, 89, 135, 168, 408, 621
BspANI	GGCC	2 cut(s)	5, 68
BspCNI	CTCAG	3 cut(s)	380, 413, 495
BspLI	GGNNCC	1 cut(s)	175
BspMAI	CTGCAG	1 cut(s)	81
BspQI	GCTCTTC	1 cut(s)	122
BspT107I	GGYRCC	1 cut(s)	173
BsrBI	CCGCTC	1 cut(s)	31
BsrFI	RCCGGY	1 cut(s)	170
BsrI	ACTGG	6 cut(s)	214, 325, 350, 393, 530, 605
BssAI	RCCGGY	1 cut(s)	170
BssMI	GATC	1 cut(s)	354
BssNI	GRCGYC	1 cut(s)	174
Bst4CI	ACNGT	2 cut(s)	223, 280
Bst6I	CTCTTC	2 cut(s)	122, 238
BstACI	GRCGYC	1 cut(s)	174
BstAPI	GCANNNNNTGC	1 cut(s)	85
BstBAI	YACGTR	1 cut(s)	259
BstC8I	GCNNGC	3 cut(s)	86, 172, 626
BstDEI	CTNAG	3 cut(s)	367, 400, 482
BstF5I	GGATG	2 cut(s)	289, 568
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	1 cut(s)	357
BstMAI	GTCTC	2 cut(s)	370, 578
BstMBI	GATC	1 cut(s)	354
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 85, 173
BstNSI	RCATGY	2 cut(s)	430, 686
BstSCI	CCNGG	1 cut(s)	103
BstSFI	CTRYAG	2 cut(s)	77, 291
BstV1I	GCAGC	3 cut(s)	63, 78, 652
BstV2I	GAAGAC	2 cut(s)	42, 137
BsuRI	GGCC	2 cut(s)	5, 68
BtsCI	GGATG	2 cut(s)	289, 568
BtsI	GCAGTG	1 cut(s)	86
BtsIMutI	CAGTG	3 cut(s)	86, 318, 386
Cac8I	GCNNGC	3 cut(s)	86, 172, 626
CfoI	GCGC	1 cut(s)	176
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	153
CseI	GACGC	1 cut(s)	36
Csp6I	GTAC	2 cut(s)	197, 470
CspCI	CAANNNNNGTGG	2 cut(s)	261, 296
CviAII	CATG	3 cut(s)	184, 427, 683
CviQI	GTAC	2 cut(s)	197, 470
DdeI	CTNAG	3 cut(s)	367, 400, 482
DinI	GGCGCC	1 cut(s)	175
DpnI	GATC	1 cut(s)	356
DpnII	GATC	1 cut(s)	354
DraIII	CACNNNGTG	1 cut(s)	262
EaeI	YGGCCR	1 cut(s)	66
Eam1104I	CTCTTC	2 cut(s)	122, 238
EarI	CTCTTC	2 cut(s)	122, 238
Eco47I	GGWCC	1 cut(s)	153
Eco72I	CACGTG	1 cut(s)	259
EcoO109I	RGGNCCY	1 cut(s)	153
EgeI	GGCGCC	1 cut(s)	175
EheI	GGCGCC	1 cut(s)	175
FaeI	CATG	3 cut(s)	187, 430, 686
FaiI	YATR	8 cut(s)	185, 236, 293, 375, 428, 659, 684, 703
FatI	CATG	3 cut(s)	183, 426, 682
Fnu4HI	GCNGC	7 cut(s)	77, 89, 92, 135, 168, 622, 666
FokI	GGATG	2 cut(s)	296, 575
Fsp4HI	GCNGC	7 cut(s)	77, 89, 92, 135, 168, 622, 666
FspBI	CTAG	2 cut(s)	570, 687
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	7 cut(s)	77, 89, 92, 135, 168, 622, 666
GsuI	CTGGAG	2 cut(s)	231, 602
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	5, 68
HapII	CCGG	5 cut(s)	65, 104, 171, 200, 329
HgaI	GACGC	1 cut(s)	36
HhaI	GCGC	1 cut(s)	176
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	3 cut(s)	187, 430, 686
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HinfI	GANTC	1 cut(s)	315
HpaII	CCGG	5 cut(s)	65, 104, 171, 200, 329
HphI	GGTGA	3 cut(s)	274, 343, 521
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	3 cut(s)	111, 150, 370
Hpy188III	TCNNGA	3 cut(s)	20, 121, 434
Hpy8I	GTNNAC	1 cut(s)	442
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	3 cut(s)	166, 190, 680
HpyCH4III	ACNGT	2 cut(s)	223, 280
HpyCH4IV	ACGT	2 cut(s)	129, 258
HpyCH4V	TGCA	2 cut(s)	79, 256
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 85, 173
HpyF3I	CTNAG	3 cut(s)	367, 400, 482
HpySE526I	ACGT	2 cut(s)	129, 258
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	3 cut(s)	187, 430, 686
HspAI	GCGC	1 cut(s)	174
KasI	GGCGCC	1 cut(s)	173
KroI	GCCGGC	1 cut(s)	170
KroNI	GCCGGC	1 cut(s)	172
Kzo9I	GATC	1 cut(s)	354
LguI	GCTCTTC	1 cut(s)	122
LmnI	GCTCC	2 cut(s)	36, 67
Lsp1109I	GCAGC	3 cut(s)	63, 78, 652
MaeI	CTAG	2 cut(s)	570, 687
MaeII	ACGT	2 cut(s)	129, 258
MalI	GATC	1 cut(s)	356
MbiI	CCGCTC	1 cut(s)	31
MboI	GATC	1 cut(s)	354
MboII	GAAGA	5 cut(s)	42, 109, 137, 255, 423
MluCI	AATT	4 cut(s)	190, 350, 636, 692
Mly113I	GGCGCC	1 cut(s)	174
MmeI	TCCRAC	2 cut(s)	89, 431
MnlI	CCTC	9 cut(s)	16, 36, 44, 48, 105, 144, 241, 460, 641
MreI	CGCCGGCG	1 cut(s)	170
MroNI	GCCGGC	1 cut(s)	170
MseI	TTAA	1 cut(s)	462
MslI	CAYNNNNRTG	2 cut(s)	182, 687
MspA1I	CMGCKG	1 cut(s)	91
MspI	CCGG	5 cut(s)	65, 104, 171, 200, 329
MspR9I	CCNGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	3 cut(s)	53, 85, 173
NaeI	GCCGGC	1 cut(s)	172
NarI	GGCGCC	1 cut(s)	174
NciI	CCSGG	1 cut(s)	105
NdeII	GATC	1 cut(s)	354
NgoMIV	GCCGGC	1 cut(s)	170
NlaIII	CATG	3 cut(s)	187, 430, 686
NlaIV	GGNNCC	1 cut(s)	175
NspI	RCATGY	2 cut(s)	430, 686
PciSI	GCTCTTC	1 cut(s)	122
PdiI	GCCGGC	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	315
PkrI	GCNGC	7 cut(s)	78, 90, 93, 136, 169, 623, 667
PluTI	GGCGCC	1 cut(s)	177
PmaCI	CACGTG	1 cut(s)	259
PmlI	CACGTG	1 cut(s)	259
Ppu21I	YACGTR	1 cut(s)	259
PpuMI	RGGWCCY	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	153
PspCI	CACGTG	1 cut(s)	259
PspN4I	GGNNCC	1 cut(s)	175
PspPI	GGNCC	1 cut(s)	153
PspPPI	RGGWCCY	1 cut(s)	153
PstI	CTGCAG	1 cut(s)	81
RsaI	GTAC	2 cut(s)	198, 471
RsaNI	GTAC	2 cut(s)	197, 470
RseI	CAYNNNNRTG	2 cut(s)	182, 687
SapI	GCTCTTC	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	7 cut(s)	77, 89, 92, 135, 168, 622, 666
Sau3AI	GATC	1 cut(s)	354
Sau96I	GGNCC	1 cut(s)	153
ScrFI	CCNGG	1 cut(s)	105
SfcI	CTRYAG	2 cut(s)	77, 291
SfoI	GGCGCC	1 cut(s)	175
SgrAI	CRCCGGYG	1 cut(s)	170
SinI	GGWCC	1 cut(s)	153
SmiMI	CAYNNNNRTG	2 cut(s)	182, 687
Sse9I	AATT	4 cut(s)	190, 350, 636, 692
SsiI	CCGC	7 cut(s)	29, 54, 89, 135, 168, 408, 621
SspDI	GGCGCC	1 cut(s)	173
SspMI	CTAG	2 cut(s)	570, 687
StyD4I	CCNGG	1 cut(s)	103
TaaI	ACNGT	2 cut(s)	223, 280
TaiI	ACGT	2 cut(s)	132, 261
TaqI	TCGA	2 cut(s)	8, 306
TaqII	GACCGA	1 cut(s)	347
TasI	AATT	4 cut(s)	190, 350, 636, 692
TauI	GCSGC	4 cut(s)	91, 137, 170, 624
TfiI	GAWTC	1 cut(s)	315
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	3 cut(s)	86, 325, 393
TseI	GCWGC	3 cut(s)	76, 91, 665
TspDTI	ATGAA	4 cut(s)	172, 300, 630, 692
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	3 cut(s)	86, 325, 393
VpaK11BI	GGWCC	1 cut(s)	153
XceI	RCATGY	2 cut(s)	430, 686
XcmI	CCANNNNNNNNNTGG	1 cut(s)	499
XspI	CTAG	2 cut(s)	570, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.