Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0008316

Physical Location & Seq

Genomic Coordinates Forward (+)

17821687 .. 17824959

Gene Structure 3273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG195100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCCTCGATTTTCGTTCCAGACCCTTCGCTTCTCCGTAACTTCACGGCGGCTCCGTCGAATCTGCTGCTTCTATCTCTCCCCGGCCGGAGGCCGTTCTCGGTGTCCGTCGCCACGTGTCCAAATTTGGGGCTAGGGAGGTCCTTCGCCGTCTCCGGCGCCGCTAGCGACACCTTCATGGCTAATTCGTCCAAAAATGGAGTTCTTACAGTTGGTGATTTCATGACTAGAAGAGAGGATTTGCATGTGGTGAATCCTACCACAACTGTAGATGAAGCTATAGAGCTTCTTGTGGAAAACAGAATCACTGGTTTTCCGGTGATCGACAGTGACTGGAAATTGGTTGGTCTTGTTTCAGATTATGACTTGTTAGCATTGGACACAATATCAGGTGGTTGTGGAAAAACTGACAACAGCATGTTTCCTGAAGTTGACAGCTCTTGGAAAACTTTTAATGAGGTACAGAAGTTGCTCAGTAAAACCAATGGCCAGGTGGTGGGCGATGTGATGACACCAGCTCCAGTTGTTGTTCGTGAAACCACTAATCTTGAAGATGTTGCTAGGTTATTGCTTGAAACAAAATATCGCCGACTTCCAGTTGTAGACGACAGCGGTAAACTGGTTGGAATTATTACAAGGGGGAACATCATAAGAGCTGCCCTTCAAATGAAACATGCAAGTGAAATGAAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0019725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

231

Amino Acids

25.01

Weight (kDa)

5.46

Isoelectric Point (pI)

36.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	71 - 125	3.9e-14	CBS domain
CBS	PF00571	166 - 220	7.4e-19	CBS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36910
fragaria_vesca	FvH4_1g16360 FvH4_1g16360
malus_domestica	MD02G1176100.v1.1 MD15G1286500.v1.1
prunus_persica	Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1
pyrus_communis	pycom02g14220 pycom15g24980
rosa_chinensis	RchiOBHm_Chr2g0106231
rosa_laevigata	RLG00000017481
rosa_multiflora	Rmu_sc0008603.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137350
rosa_rugosa	Rorug02G0133700
rosa_samantha	Rh2AG184700 Rh2BG195100 Rh2CG189800 Rh2DG191000
rosa_wichuraiana	Rw2G014420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	158
AccB7I	CCANNNNNTGG	1 cut(s)	496
AccI	GTMKAC	1 cut(s)	603
AciI	CCGC	3 cut(s)	50, 162, 612
AcoI	YGGCCR	2 cut(s)	85, 487
AcsI	RAATTY	1 cut(s)	124
AcuI	CTGAAG	1 cut(s)	447
AcvI	CACGTG	1 cut(s)	117
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	1 cut(s)	462
AfiI	CCNNNNNNNGG	3 cut(s)	90, 128, 496
AflIII	ACRYGT	1 cut(s)	116
AgsI	TTSAA	3 cut(s)	551, 575, 665
AjnI	CCWGG	1 cut(s)	489
AluBI	AGCT	5 cut(s)	278, 286, 438, 518, 656
AluI	AGCT	5 cut(s)	278, 286, 438, 518, 656
Alw26I	GTCTC	1 cut(s)	157
AlwNI	CAGNNNCTG	1 cut(s)	333
AoxI	GGCC	4 cut(s)	3, 85, 92, 487
ApeKI	GCWGC	2 cut(s)	67, 656
ApoI	RAATTY	1 cut(s)	124
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	141
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	3 cut(s)	227, 262, 331
AsuNHI	GCTAGC	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	141
BaeI	ACNNNNGTAYC	2 cut(s)	452, 485
BalI	TGGCCA	1 cut(s)	489
BanI	GGYRCC	1 cut(s)	158
BbrPI	CACGTG	1 cut(s)	117
BbvI	GCAGC	2 cut(s)	54, 643
BceAI	ACGGC	3 cut(s)	63, 79, 134
BcgI	CGANNNNNNTGC	2 cut(s)	49, 83
BciT130I	CCWGG	1 cut(s)	491
BcnI	CCSGG	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	4 cut(s)	134, 165, 228, 561
BfmI	CTRYAG	2 cut(s)	267, 279
BfoI	RGCGCY	1 cut(s)	162
BisI	GCNGC	4 cut(s)	51, 68, 162, 657
BlsI	GCNGC	4 cut(s)	52, 69, 163, 658
Bme1390I	CCNGG	2 cut(s)	84, 491
Bme18I	GGWCC	1 cut(s)	141
BmgT120I	GGNCC	1 cut(s)	141
BmiI	GGNNCC	2 cut(s)	54, 160
BmrFI	CCNGG	2 cut(s)	84, 491
BmtI	GCTAGC	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	504
BpuMI	CCSGG	1 cut(s)	84
BsaAI	YACGTR	1 cut(s)	117
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	82
BsaWI	WCCGGW	1 cut(s)	316
BsaXI	ACNNNNNCTCC	4 cut(s)	37, 67, 502, 532
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 128, 496
Bse1I	ACTGG	5 cut(s)	313, 338, 521, 596, 624
BseBI	CCWGG	1 cut(s)	491
BseDI	CCNNGG	1 cut(s)	82
BseLI	CCNNNNNNNGG	3 cut(s)	90, 128, 496
BseMII	CTCAG	1 cut(s)	487
BseNI	ACTGG	5 cut(s)	313, 338, 521, 596, 624
BseX3I	CGGCCG	1 cut(s)	85
BseXI	GCAGC	2 cut(s)	54, 643
Bsh1285I	CGRYCG	1 cut(s)	88
BshFI	GGCC	4 cut(s)	5, 87, 94, 489
BshNI	GGYRCC	1 cut(s)	158
BsiEI	CGRYCG	1 cut(s)	88
BsiSI	CCGG	4 cut(s)	84, 88, 156, 317
BslI	CCNNNNNNNGG	3 cut(s)	90, 128, 496
BsmAI	GTCTC	1 cut(s)	157
BsmBI	CGTCTC	1 cut(s)	157
BsnI	GGCC	4 cut(s)	5, 87, 94, 489
Bsp143I	GATC	1 cut(s)	321
BspACI	CCGC	3 cut(s)	50, 162, 612
BspANI	GGCC	4 cut(s)	5, 87, 94, 489
BspCNI	CTCAG	1 cut(s)	486
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	2 cut(s)	54, 160
BspOI	GCTAGC	1 cut(s)	168
BspT107I	GGYRCC	1 cut(s)	158
BsrI	ACTGG	5 cut(s)	313, 338, 521, 596, 624
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	1 cut(s)	321
BssNI	GRCGYC	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	491
Bst4CI	ACNGT	3 cut(s)	211, 268, 329
Bst6I	CTCTTC	1 cut(s)	226
BstACI	GRCGYC	1 cut(s)	159
BstBAI	YACGTR	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	1 cut(s)	473
BstH2I	RGCGCY	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	1 cut(s)	324
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	321
BstMCI	CGRYCG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	1 cut(s)	165
BstNI	CCWGG	1 cut(s)	491
BstNSI	RCATGY	3 cut(s)	248, 421, 677
BstSCI	CCNGG	2 cut(s)	82, 489
BstSFI	CTRYAG	2 cut(s)	267, 279
BstV1I	GCAGC	2 cut(s)	54, 643
BstZI	CGGCCG	1 cut(s)	85
BsuRI	GGCC	4 cut(s)	5, 87, 94, 489
BtgZI	GCGATG	1 cut(s)	516
BtsIMutI	CAGTG	2 cut(s)	306, 334
Cac8I	GCNNGC	1 cut(s)	166
CaiI	CAGNNNCTG	1 cut(s)	333
CciI	TCATGA	1 cut(s)	222
CfoI	GCGC	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	141
Csp6I	GTAC	1 cut(s)	461
CspCI	CAANNNNNGTGG	2 cut(s)	529, 564
CviAII	CATG	5 cut(s)	178, 223, 245, 418, 674
CviQI	GTAC	1 cut(s)	461
DdeI	CTNAG	1 cut(s)	473
DinI	GGCGCC	1 cut(s)	160
DpnI	GATC	1 cut(s)	323
DpnII	GATC	1 cut(s)	321
EaeI	YGGCCR	2 cut(s)	85, 487
EagI	CGGCCG	1 cut(s)	85
Eam1104I	CTCTTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	226
EclXI	CGGCCG	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	141
Eco52I	CGGCCG	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	447
Eco72I	CACGTG	1 cut(s)	117
EcoO109I	RGGNCCY	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	489
EgeI	GGCGCC	1 cut(s)	160
EheI	GGCGCC	1 cut(s)	160
Esp3I	CGTCTC	1 cut(s)	157
FaeI	CATG	5 cut(s)	181, 226, 248, 421, 677
FaiI	YATR	9 cut(s)	179, 224, 246, 281, 363, 419, 650, 675, 694
FatI	CATG	5 cut(s)	177, 222, 244, 417, 673
FblI	GTMKAC	1 cut(s)	603
Fnu4HI	GCNGC	4 cut(s)	51, 68, 162, 657
Fsp4HI	GCNGC	4 cut(s)	51, 68, 162, 657
FspBI	CTAG	4 cut(s)	134, 165, 228, 561
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	4 cut(s)	51, 68, 162, 657
GsuI	CTGGAG	1 cut(s)	504
HaeII	RGCGCY	1 cut(s)	162
HaeIII	GGCC	4 cut(s)	5, 87, 94, 489
HapII	CCGG	4 cut(s)	84, 88, 156, 317
HhaI	GCGC	1 cut(s)	161
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	5 cut(s)	181, 226, 248, 421, 677
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HinfI	GANTC	3 cut(s)	61, 253, 303
HpaII	CCGG	4 cut(s)	84, 88, 156, 317
HphI	GGTGA	3 cut(s)	227, 262, 331
Hpy166II	GTNNAC	3 cut(s)	433, 604, 617
Hpy188I	TCNGA	1 cut(s)	358
Hpy188III	TCNNGA	5 cut(s)	20, 223, 425, 533, 548
Hpy8I	GTNNAC	3 cut(s)	433, 604, 617
Hpy99I	CGWCG	2 cut(s)	61, 113
HpyAV	CCTTC	4 cut(s)	36, 154, 184, 671
HpyCH4III	ACNGT	3 cut(s)	211, 268, 329
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	2 cut(s)	244, 677
HpyF10VI	GCNNNNNNNGC	1 cut(s)	165
HpyF3I	CTNAG	1 cut(s)	473
HpySE526I	ACGT	1 cut(s)	116
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	5 cut(s)	181, 226, 248, 421, 677
HspAI	GCGC	1 cut(s)	159
KasI	GGCGCC	1 cut(s)	158
Kzo9I	GATC	1 cut(s)	321
LmnI	GCTCC	2 cut(s)	58, 523
Lsp1109I	GCAGC	2 cut(s)	54, 643
MaeI	CTAG	4 cut(s)	134, 165, 228, 561
MaeII	ACGT	1 cut(s)	116
MaeIII	GTNAC	2 cut(s)	38, 329
MalI	GATC	1 cut(s)	323
MboI	GATC	1 cut(s)	321
MboII	GAAGA	2 cut(s)	243, 563
MlsI	TGGCCA	1 cut(s)	489
MluCI	AATT	4 cut(s)	124, 184, 338, 627
MluNI	TGGCCA	1 cut(s)	489
Mly113I	GGCGCC	1 cut(s)	159
MmeI	TCCRAC	1 cut(s)	604
MnlI	CCTC	5 cut(s)	16, 84, 132, 229, 451
Mox20I	TGGCCA	1 cut(s)	489
MscI	TGGCCA	1 cut(s)	489
MseI	TTAA	1 cut(s)	453
MslI	CAYNNNNRTG	2 cut(s)	176, 678
Msp20I	TGGCCA	1 cut(s)	489
MspA1I	CMGCKG	1 cut(s)	612
MspI	CCGG	4 cut(s)	84, 88, 156, 317
MspR9I	CCNGG	2 cut(s)	84, 491
MvaI	CCWGG	1 cut(s)	491
MwoI	GCNNNNNNNGC	1 cut(s)	165
NarI	GGCGCC	1 cut(s)	159
NciI	CCSGG	1 cut(s)	84
NdeII	GATC	1 cut(s)	321
NheI	GCTAGC	1 cut(s)	164
NlaIII	CATG	5 cut(s)	181, 226, 248, 421, 677
NlaIV	GGNNCC	2 cut(s)	54, 160
NmuCI	GTSAC	1 cut(s)	329
NspI	RCATGY	3 cut(s)	248, 421, 677
PagI	TCATGA	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	53
PfeI	GAWTC	3 cut(s)	61, 253, 303
PflMI	CCANNNNNTGG	1 cut(s)	496
PkrI	GCNGC	4 cut(s)	52, 69, 163, 658
PluTI	GGCGCC	1 cut(s)	162
PmaCI	CACGTG	1 cut(s)	117
PmlI	CACGTG	1 cut(s)	117
Ppu21I	YACGTR	1 cut(s)	117
PpuMI	RGGWCCY	1 cut(s)	141
Psp5II	RGGWCCY	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	489
PspCI	CACGTG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	489
PspN4I	GGNNCC	2 cut(s)	54, 160
PspPI	GGNCC	1 cut(s)	141
PspPPI	RGGWCCY	1 cut(s)	141
PstNI	CAGNNNCTG	1 cut(s)	333
RsaI	GTAC	1 cut(s)	462
RsaNI	GTAC	1 cut(s)	461
RseI	CAYNNNNRTG	2 cut(s)	176, 678
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	4 cut(s)	51, 68, 162, 657
Sau3AI	GATC	1 cut(s)	321
Sau96I	GGNCC	1 cut(s)	141
ScrFI	CCNGG	2 cut(s)	84, 491
SfcI	CTRYAG	2 cut(s)	267, 279
SfoI	GGCGCC	1 cut(s)	160
SinI	GGWCC	1 cut(s)	141
SmiMI	CAYNNNNRTG	2 cut(s)	176, 678
Sse9I	AATT	4 cut(s)	124, 184, 338, 627
SsiI	CCGC	3 cut(s)	50, 162, 612
SspDI	GGCGCC	1 cut(s)	158
SspMI	CTAG	4 cut(s)	134, 165, 228, 561
StyD4I	CCNGG	2 cut(s)	82, 489
TaaI	ACNGT	3 cut(s)	211, 268, 329
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	3 cut(s)	8, 59, 324
TasI	AATT	4 cut(s)	124, 184, 338, 627
TauI	GCSGC	2 cut(s)	53, 164
TfiI	GAWTC	3 cut(s)	61, 253, 303
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	2 cut(s)	313, 334
TseFI	GTSAC	1 cut(s)	329
TseI	GCWGC	2 cut(s)	67, 656
Tsp45I	GTSAC	1 cut(s)	329
TspDTI	ATGAA	4 cut(s)	166, 211, 288, 683
TspGWI	ACGGA	3 cut(s)	26, 45, 97
TspRI	CASTG	2 cut(s)	313, 334
Van91I	CCANNNNNTGG	1 cut(s)	496
VpaK11BI	GGWCC	1 cut(s)	141
XapI	RAATTY	1 cut(s)	124
XceI	RCATGY	3 cut(s)	248, 421, 677
XcmI	CCANNNNNNNNNTGG	1 cut(s)	490
XmiI	GTMKAC	1 cut(s)	603
XspI	CTAG	4 cut(s)	134, 165, 228, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.