Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008316

Physical Location & Seq

Genomic Coordinates Forward (+)

9440716 .. 9444375

Gene Structure 3660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g16360.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCCTCGATTTTCGTTCCAGACCCTTCGCTTCTCTCTAACCTCTCGGCAGCTCCGGCGAGTCGTCTGCCGTGCCTGCTGCTTCTATCTTCTCCCGGCCGGAGGCCGTTCTCGGTGTCCGTCGCCACGTGTCGCGGTTTGGGCATGCGGAGGTCCTTCGCCGTCTCCGGCGCCGCTAGCGACACCTTCATGGCTAATTCGTCCAAAAATGGAGTTCTTACGGTTGGTGATTTCATGACGAGAAGAGAGGATTTGCATGTGGTGAATCCTACTACGACTGTAGATGAAGCTATAGAGCTTCTTGTGGAGAACAGAATCACTGGGTTTCCGGTGATCGACGGTGACTGGAAATTGGTCGGTCTTGTTTCAGATTATGACTTGCTTGCACTGGATACAATATCAGGTGGTGGTGGAAAAACTGACAACAGCATGTTTCCCGAAGTTGACAGCTCTTGGAAAACTTTTAATGAGGTACAAAAGTTGCTCAGTAAAACCAATGGCCAGGTGGTGGGCGATGTGATGACACCAGCTCCAGTTGTTGTTCGTGAAACCACTAATCTTGAGGATGTTGCTAGGATATTGCTTGAAACAAAATATCGCCGACTTCCGGTTGTAGATGACAGCGGTAAACTGGTTGGAATTATTACAAGAGGGAACATCATCAGAGCTGCCCTTCAAATGAAACATGCAAGTGAAATGAAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0019725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

236

Amino Acids

25.34

Weight (kDa)

6.15

Isoelectric Point (pI)

41.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	75 - 129	3.6e-14	CBS domain
CBS	PF00571	170 - 212	2.7e-12	CBS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36910
fragaria_vesca	FvH4_1g16360 FvH4_1g16360
malus_domestica	MD02G1176100.v1.1 MD15G1286500.v1.1
prunus_persica	Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1
pyrus_communis	pycom02g14220 pycom15g24980
rosa_chinensis	RchiOBHm_Chr2g0106231
rosa_laevigata	RLG00000017481
rosa_multiflora	Rmu_sc0008603.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137350
rosa_rugosa	Rorug02G0133700
rosa_samantha	Rh2AG184700 Rh2BG195100 Rh2CG189800 Rh2DG191000
rosa_wichuraiana	Rw2G014420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	170
AccB7I	CCANNNNNTGG	1 cut(s)	508
AccII	CGCG	1 cut(s)	135
AciI	CCGC	4 cut(s)	135, 148, 174, 624
AcoI	YGGCCR	2 cut(s)	97, 499
AcvI	CACGTG	1 cut(s)	129
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	1 cut(s)	474
AfiI	CCNNNNNNNGG	3 cut(s)	102, 508, 607
AflIII	ACRYGT	1 cut(s)	128
AgsI	TTSAA	2 cut(s)	587, 677
AjnI	CCWGG	1 cut(s)	501
AluBI	AGCT	6 cut(s)	53, 290, 298, 450, 530, 668
AluI	AGCT	6 cut(s)	53, 290, 298, 450, 530, 668
Alw26I	GTCTC	1 cut(s)	169
AoxI	GGCC	4 cut(s)	3, 97, 104, 499
ApeKI	GCWGC	3 cut(s)	50, 79, 668
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	153
AsuC2I	CCSGG	1 cut(s)	96
AsuHPI	GGTGA	4 cut(s)	239, 274, 343, 353
AsuNHI	GCTAGC	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	153
BaeI	ACNNNNGTAYC	2 cut(s)	464, 497
BalI	TGGCCA	1 cut(s)	501
BanI	GGYRCC	1 cut(s)	170
BbrPI	CACGTG	1 cut(s)	129
BbvI	GCAGC	3 cut(s)	62, 66, 655
BceAI	ACGGC	3 cut(s)	55, 91, 146
BcgI	CGANNNNNNTGC	2 cut(s)	49, 83
BciT130I	CCWGG	1 cut(s)	503
BciVI	GTATCC	1 cut(s)	385
BcnI	CCSGG	1 cut(s)	96
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	2 cut(s)	177, 573
BfmI	CTRYAG	2 cut(s)	279, 291
BfoI	RGCGCY	1 cut(s)	174
BfuI	GTATCC	1 cut(s)	385
BisI	GCNGC	4 cut(s)	51, 80, 174, 669
BlsI	GCNGC	4 cut(s)	52, 81, 175, 670
Bme1390I	CCNGG	2 cut(s)	96, 503
Bme18I	GGWCC	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	1 cut(s)	172
BmrFI	CCNGG	2 cut(s)	96, 503
BmrI	ACTGGG	1 cut(s)	330
BmtI	GCTAGC	1 cut(s)	180
BmuI	ACTGGG	1 cut(s)	330
BpmI	CTGGAG	1 cut(s)	516
BpuEI	CTTGAG	1 cut(s)	581
BpuMI	CCSGG	1 cut(s)	96
BsaAI	YACGTR	1 cut(s)	129
BsaHI	GRCGYC	1 cut(s)	171
BsaWI	WCCGGW	2 cut(s)	328, 607
BsaXI	ACNNNNNCTCC	2 cut(s)	514, 544
Bsc4I	CCNNNNNNNGG	3 cut(s)	102, 508, 607
Bse1I	ACTGG	5 cut(s)	325, 350, 393, 533, 636
BseBI	CCWGG	1 cut(s)	503
BseGI	GGATG	1 cut(s)	571
BseLI	CCNNNNNNNGG	3 cut(s)	102, 508, 607
BseMII	CTCAG	1 cut(s)	499
BseNI	ACTGG	5 cut(s)	325, 350, 393, 533, 636
BseX3I	CGGCCG	1 cut(s)	97
BseXI	GCAGC	3 cut(s)	62, 66, 655
Bsh1236I	CGCG	1 cut(s)	135
Bsh1285I	CGRYCG	1 cut(s)	100
BshFI	GGCC	4 cut(s)	5, 99, 106, 501
BshNI	GGYRCC	1 cut(s)	170
BsiEI	CGRYCG	1 cut(s)	100
BsiSI	CCGG	6 cut(s)	56, 96, 100, 168, 329, 608
BslI	CCNNNNNNNGG	3 cut(s)	102, 508, 607
BsmAI	GTCTC	1 cut(s)	169
BsmBI	CGTCTC	1 cut(s)	169
BsnI	GGCC	4 cut(s)	5, 99, 106, 501
Bsp143I	GATC	1 cut(s)	333
BspACI	CCGC	4 cut(s)	135, 148, 174, 624
BspANI	GGCC	4 cut(s)	5, 99, 106, 501
BspCNI	CTCAG	1 cut(s)	498
BspFNI	CGCG	1 cut(s)	135
BspHI	TCATGA	1 cut(s)	234
BspLI	GGNNCC	1 cut(s)	172
BspOI	GCTAGC	1 cut(s)	180
BspT107I	GGYRCC	1 cut(s)	170
BsrI	ACTGG	5 cut(s)	325, 350, 393, 533, 636
BssMI	GATC	1 cut(s)	333
BssNI	GRCGYC	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	3 cut(s)	223, 280, 341
Bst6I	CTCTTC	1 cut(s)	238
BstACI	GRCGYC	1 cut(s)	171
BstBAI	YACGTR	1 cut(s)	129
BstC8I	GCNNGC	4 cut(s)	77, 146, 178, 384
BstDEI	CTNAG	1 cut(s)	485
BstF5I	GGATG	1 cut(s)	571
BstFNI	CGCG	1 cut(s)	135
BstH2I	RGCGCY	1 cut(s)	174
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	1 cut(s)	336
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	333
BstMCI	CGRYCG	1 cut(s)	100
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 76, 141, 177
BstNI	CCWGG	1 cut(s)	503
BstNSI	RCATGY	4 cut(s)	148, 260, 433, 689
BstSCI	CCNGG	2 cut(s)	94, 501
BstSFI	CTRYAG	2 cut(s)	279, 291
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	3 cut(s)	62, 66, 655
BstZI	CGGCCG	1 cut(s)	97
BsuI	GTATCC	1 cut(s)	385
BsuRI	GGCC	4 cut(s)	5, 99, 106, 501
BtgZI	GCGATG	1 cut(s)	528
BtsCI	GGATG	1 cut(s)	571
BtsIMutI	CAGTG	2 cut(s)	318, 386
Cac8I	GCNNGC	4 cut(s)	77, 146, 178, 384
CciI	TCATGA	1 cut(s)	234
CfoI	GCGC	1 cut(s)	173
Cfr13I	GGNCC	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	473
CspCI	CAANNNNNGTGG	2 cut(s)	541, 576
CviAII	CATG	6 cut(s)	145, 190, 235, 257, 430, 686
CviQI	GTAC	1 cut(s)	473
DdeI	CTNAG	1 cut(s)	485
DinI	GGCGCC	1 cut(s)	172
DpnI	GATC	1 cut(s)	335
DpnII	GATC	1 cut(s)	333
EaeI	YGGCCR	2 cut(s)	97, 499
EagI	CGGCCG	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	238
EarI	CTCTTC	1 cut(s)	238
EclXI	CGGCCG	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	153
Eco52I	CGGCCG	1 cut(s)	97
Eco72I	CACGTG	1 cut(s)	129
EcoO109I	RGGNCCY	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	501
EgeI	GGCGCC	1 cut(s)	172
EheI	GGCGCC	1 cut(s)	172
Esp3I	CGTCTC	1 cut(s)	169
FaeI	CATG	6 cut(s)	148, 193, 238, 260, 433, 689
FaiI	YATR	9 cut(s)	146, 191, 236, 258, 293, 375, 431, 687, 706
FatI	CATG	6 cut(s)	144, 189, 234, 256, 429, 685
Fnu4HI	GCNGC	4 cut(s)	51, 80, 174, 669
FokI	GGATG	1 cut(s)	578
Fsp4HI	GCNGC	4 cut(s)	51, 80, 174, 669
FspBI	CTAG	2 cut(s)	177, 573
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	4 cut(s)	51, 80, 174, 669
GsuI	CTGGAG	1 cut(s)	516
HaeII	RGCGCY	1 cut(s)	174
HaeIII	GGCC	4 cut(s)	5, 99, 106, 501
HapII	CCGG	6 cut(s)	56, 96, 100, 168, 329, 608
HhaI	GCGC	1 cut(s)	173
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	6 cut(s)	148, 193, 238, 260, 433, 689
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HinfI	GANTC	3 cut(s)	61, 265, 315
HpaII	CCGG	6 cut(s)	56, 96, 100, 168, 329, 608
HphI	GGTGA	4 cut(s)	239, 274, 343, 353
Hpy166II	GTNNAC	2 cut(s)	445, 629
Hpy188I	TCNGA	2 cut(s)	370, 665
Hpy188III	TCNNGA	5 cut(s)	20, 235, 437, 545, 560
Hpy8I	GTNNAC	2 cut(s)	445, 629
Hpy99I	CGWCG	2 cut(s)	125, 341
HpyAV	CCTTC	4 cut(s)	36, 166, 196, 683
HpyCH4III	ACNGT	3 cut(s)	223, 280, 341
HpyCH4IV	ACGT	1 cut(s)	128
HpyCH4V	TGCA	3 cut(s)	256, 386, 689
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 76, 141, 177
HpyF3I	CTNAG	1 cut(s)	485
HpySE526I	ACGT	1 cut(s)	128
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	6 cut(s)	148, 193, 238, 260, 433, 689
HspAI	GCGC	1 cut(s)	171
KasI	GGCGCC	1 cut(s)	170
Kzo9I	GATC	1 cut(s)	333
LmnI	GCTCC	2 cut(s)	58, 535
Lsp1109I	GCAGC	3 cut(s)	62, 66, 655
MaeI	CTAG	2 cut(s)	177, 573
MaeII	ACGT	1 cut(s)	128
MaeIII	GTNAC	1 cut(s)	341
MalI	GATC	1 cut(s)	335
MboI	GATC	1 cut(s)	333
MboII	GAAGA	2 cut(s)	81, 255
MlsI	TGGCCA	1 cut(s)	501
MluCI	AATT	3 cut(s)	196, 350, 639
MluNI	TGGCCA	1 cut(s)	501
Mly113I	GGCGCC	1 cut(s)	171
MlyI	GAGTC	1 cut(s)	70
MmeI	TCCRAC	1 cut(s)	616
MnlI	CCTC	8 cut(s)	16, 53, 96, 144, 241, 463, 556, 644
Mox20I	TGGCCA	1 cut(s)	501
MscI	TGGCCA	1 cut(s)	501
MseI	TTAA	1 cut(s)	465
MslI	CAYNNNNRTG	2 cut(s)	188, 690
Msp20I	TGGCCA	1 cut(s)	501
MspA1I	CMGCKG	1 cut(s)	624
MspI	CCGG	6 cut(s)	56, 96, 100, 168, 329, 608
MspR9I	CCNGG	2 cut(s)	96, 503
MvaI	CCWGG	1 cut(s)	503
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	4 cut(s)	56, 76, 141, 177
NarI	GGCGCC	1 cut(s)	171
NciI	CCSGG	1 cut(s)	96
NdeII	GATC	1 cut(s)	333
NheI	GCTAGC	1 cut(s)	176
NlaIII	CATG	6 cut(s)	148, 193, 238, 260, 433, 689
NlaIV	GGNNCC	1 cut(s)	172
NmeAIII	GCCGAG	1 cut(s)	26
NmuCI	GTSAC	1 cut(s)	341
NspI	RCATGY	4 cut(s)	148, 260, 433, 689
PaeI	GCATGC	1 cut(s)	148
PagI	TCATGA	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	265, 315
PflMI	CCANNNNNTGG	1 cut(s)	508
PkrI	GCNGC	4 cut(s)	52, 81, 175, 670
PleI	GAGTC	1 cut(s)	69
PluTI	GGCGCC	1 cut(s)	174
PmaCI	CACGTG	1 cut(s)	129
PmlI	CACGTG	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	69
Ppu21I	YACGTR	1 cut(s)	129
PpuMI	RGGWCCY	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	501
PspCI	CACGTG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	501
PspN4I	GGNNCC	1 cut(s)	172
PspPI	GGNCC	1 cut(s)	153
PspPPI	RGGWCCY	1 cut(s)	153
RsaI	GTAC	1 cut(s)	474
RsaNI	GTAC	1 cut(s)	473
RseI	CAYNNNNRTG	2 cut(s)	188, 690
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	4 cut(s)	51, 80, 174, 669
Sau3AI	GATC	1 cut(s)	333
Sau96I	GGNCC	1 cut(s)	153
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	2 cut(s)	96, 503
SfcI	CTRYAG	2 cut(s)	279, 291
SfoI	GGCGCC	1 cut(s)	172
SinI	GGWCC	1 cut(s)	153
SmiMI	CAYNNNNRTG	2 cut(s)	188, 690
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
SphI	GCATGC	1 cut(s)	148
Sse9I	AATT	3 cut(s)	196, 350, 639
SsiI	CCGC	4 cut(s)	135, 148, 174, 624
SspDI	GGCGCC	1 cut(s)	170
SspMI	CTAG	2 cut(s)	177, 573
StyD4I	CCNGG	2 cut(s)	94, 501
TaaI	ACNGT	3 cut(s)	223, 280, 341
TaiI	ACGT	1 cut(s)	131
TaqI	TCGA	2 cut(s)	8, 336
TaqII	GACCGA	1 cut(s)	347
TasI	AATT	3 cut(s)	196, 350, 639
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	2 cut(s)	265, 315
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TscAI	CASTG	2 cut(s)	325, 393
TseFI	GTSAC	1 cut(s)	341
TseI	GCWGC	3 cut(s)	50, 79, 668
Tsp45I	GTSAC	1 cut(s)	341
TspDTI	ATGAA	4 cut(s)	178, 223, 300, 695
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	2 cut(s)	325, 393
Van91I	CCANNNNNTGG	1 cut(s)	508
VpaK11BI	GGWCC	1 cut(s)	153
XceI	RCATGY	4 cut(s)	148, 260, 433, 689
XcmI	CCANNNNNNNNNTGG	1 cut(s)	502
XspI	CTAG	2 cut(s)	177, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.