Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008316

Physical Location & Seq

Genomic Coordinates Reverse (-)

75089171 .. 75092896

Gene Structure 3726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00137350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCCTCGATTTTCGTTCCAGACCCTTCGCTTCTCCGTAACTTCACGGCGGCTCCGTCGAATCGGCTTCTGTTCCTCCGGCCGTTCGCGGTGTCCGTCGCCACTTGTCCAAATTCGGGGCTAGGGAGGTCCTTCGCCGTCTCCGGCGCCGCTAGCGACACCTTCATGGCTAATTCGTCCAAAAATGGAGTTCTTACAGTTGGTGATTTCATGACTAGAAGAGAGGATTTGCATGTGGTGAATCCTACCACAACTGTAGATGAAGCTATAGAGCTTCTTGTGGAAAACAGAATCACTGGTTTTCCGGTGATCGACAGTGACTGGAAATTGGTCGGTCTTGTTTCAGATTATGACTTGTTAGCATTGGACACAATATCAGGTGGTTGTGGAAAAACTGACAACAGCATGTTTCCTGAAGTTGACAGCTCTTGGAAAACTTTTAATGAGGTACAGAAGTTGCTCAGTAAAACCAATGGCCAGGTGGTGGGCGATGTGATGACACCAGCTCCGGTTGTTGTTCGTGAAACCACTAATCTTGAGGATGTTGCTAGGTTATTGCTTGAAACAAAATATCGCCGACTTCCAGTTGTAGACGACAGCGGTAAACTGGTTGGAATTATTACAAGGGGGAACATCATAAGAGCTGCCCTTCAAATGAAACATGCAAGTGAAATGAAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0019725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

227

Amino Acids

24.65

Weight (kDa)

5.46

Isoelectric Point (pI)

34.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	67 - 121	3.8e-14	CBS domain
CBS	PF00571	162 - 216	7.2e-19	CBS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36910
fragaria_vesca	FvH4_1g16360 FvH4_1g16360
malus_domestica	MD02G1176100.v1.1 MD15G1286500.v1.1
prunus_persica	Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1
pyrus_communis	pycom02g14220 pycom15g24980
rosa_chinensis	RchiOBHm_Chr2g0106231
rosa_laevigata	RLG00000017481
rosa_multiflora	Rmu_sc0008603.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137350
rosa_rugosa	Rorug02G0133700
rosa_samantha	Rh2AG184700 Rh2BG195100 Rh2CG189800 Rh2DG191000
rosa_wichuraiana	Rw2G014420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	146
AccB7I	CCANNNNNTGG	1 cut(s)	484
AccI	GTMKAC	1 cut(s)	591
AccII	CGCG	1 cut(s)	89
AciI	CCGC	4 cut(s)	50, 89, 150, 600
AcoI	YGGCCR	2 cut(s)	80, 475
AcsI	RAATTY	1 cut(s)	112
AcuI	CTGAAG	1 cut(s)	435
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	1 cut(s)	450
AfiI	CCNNNNNNNGG	2 cut(s)	116, 484
AgsI	TTSAA	2 cut(s)	563, 653
AjnI	CCWGG	1 cut(s)	477
AluBI	AGCT	5 cut(s)	266, 274, 426, 506, 644
AluI	AGCT	5 cut(s)	266, 274, 426, 506, 644
Alw26I	GTCTC	1 cut(s)	145
AlwNI	CAGNNNCTG	1 cut(s)	321
AoxI	GGCC	3 cut(s)	3, 80, 475
ApeKI	GCWGC	1 cut(s)	644
ApoI	RAATTY	1 cut(s)	112
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	129
AsuHPI	GGTGA	3 cut(s)	215, 250, 319
AsuNHI	GCTAGC	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	129
BaeI	ACNNNNGTAYC	2 cut(s)	440, 473
BalI	TGGCCA	1 cut(s)	477
BanI	GGYRCC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	631
BceAI	ACGGC	3 cut(s)	63, 67, 122
BciT130I	CCWGG	1 cut(s)	479
BcoDI	GTCTC	1 cut(s)	145
BfaI	CTAG	4 cut(s)	122, 153, 216, 549
BfmI	CTRYAG	2 cut(s)	255, 267
BfoI	RGCGCY	1 cut(s)	150
BisI	GCNGC	3 cut(s)	51, 150, 645
BlsI	GCNGC	3 cut(s)	52, 151, 646
Bme1390I	CCNGG	1 cut(s)	479
Bme18I	GGWCC	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	2 cut(s)	54, 148
BmrFI	CCNGG	1 cut(s)	479
BmtI	GCTAGC	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	557
BsaHI	GRCGYC	1 cut(s)	147
BsaWI	WCCGGW	2 cut(s)	304, 508
BsaXI	ACNNNNNCTCC	4 cut(s)	37, 67, 490, 520
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 484
Bse1I	ACTGG	4 cut(s)	301, 326, 584, 612
BseBI	CCWGG	1 cut(s)	479
BseGI	GGATG	1 cut(s)	547
BseLI	CCNNNNNNNGG	2 cut(s)	116, 484
BseMII	CTCAG	1 cut(s)	475
BseNI	ACTGG	4 cut(s)	301, 326, 584, 612
BseX3I	CGGCCG	1 cut(s)	80
BseXI	GCAGC	1 cut(s)	631
Bsh1236I	CGCG	1 cut(s)	89
Bsh1285I	CGRYCG	1 cut(s)	83
BshFI	GGCC	3 cut(s)	5, 82, 477
BshNI	GGYRCC	1 cut(s)	146
BsiEI	CGRYCG	1 cut(s)	83
BsiSI	CCGG	4 cut(s)	79, 144, 305, 509
BslI	CCNNNNNNNGG	2 cut(s)	116, 484
BsmAI	GTCTC	1 cut(s)	145
BsmBI	CGTCTC	1 cut(s)	145
BsnI	GGCC	3 cut(s)	5, 82, 477
Bsp143I	GATC	1 cut(s)	309
BspACI	CCGC	4 cut(s)	50, 89, 150, 600
BspANI	GGCC	3 cut(s)	5, 82, 477
BspCNI	CTCAG	1 cut(s)	474
BspFNI	CGCG	1 cut(s)	89
BspHI	TCATGA	1 cut(s)	210
BspLI	GGNNCC	2 cut(s)	54, 148
BspOI	GCTAGC	1 cut(s)	156
BspT107I	GGYRCC	1 cut(s)	146
BsrI	ACTGG	4 cut(s)	301, 326, 584, 612
BssMI	GATC	1 cut(s)	309
BssNI	GRCGYC	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	479
Bst4CI	ACNGT	3 cut(s)	199, 256, 317
Bst6I	CTCTTC	1 cut(s)	214
BstACI	GRCGYC	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	154
BstDEI	CTNAG	1 cut(s)	461
BstF5I	GGATG	1 cut(s)	547
BstFNI	CGCG	1 cut(s)	89
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	1 cut(s)	312
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	309
BstMCI	CGRYCG	1 cut(s)	83
BstMWI	GCNNNNNNNGC	1 cut(s)	153
BstNI	CCWGG	1 cut(s)	479
BstNSI	RCATGY	3 cut(s)	236, 409, 665
BstSCI	CCNGG	1 cut(s)	477
BstSFI	CTRYAG	2 cut(s)	255, 267
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	1 cut(s)	631
BstZI	CGGCCG	1 cut(s)	80
BsuRI	GGCC	3 cut(s)	5, 82, 477
BtgZI	GCGATG	1 cut(s)	504
BtsCI	GGATG	1 cut(s)	547
BtsIMutI	CAGTG	2 cut(s)	294, 322
Cac8I	GCNNGC	1 cut(s)	154
CaiI	CAGNNNCTG	1 cut(s)	321
CciI	TCATGA	1 cut(s)	210
CfoI	GCGC	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	129
Csp6I	GTAC	1 cut(s)	449
CspCI	CAANNNNNGTGG	2 cut(s)	517, 552
CviAII	CATG	5 cut(s)	166, 211, 233, 406, 662
CviQI	GTAC	1 cut(s)	449
DdeI	CTNAG	1 cut(s)	461
DinI	GGCGCC	1 cut(s)	148
DpnI	GATC	1 cut(s)	311
DpnII	GATC	1 cut(s)	309
EaeI	YGGCCR	2 cut(s)	80, 475
EagI	CGGCCG	1 cut(s)	80
Eam1104I	CTCTTC	1 cut(s)	214
EarI	CTCTTC	1 cut(s)	214
EclXI	CGGCCG	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	129
Eco52I	CGGCCG	1 cut(s)	80
Eco57I	CTGAAG	1 cut(s)	435
EcoO109I	RGGNCCY	1 cut(s)	129
EcoRII	CCWGG	1 cut(s)	477
EgeI	GGCGCC	1 cut(s)	148
EheI	GGCGCC	1 cut(s)	148
Esp3I	CGTCTC	1 cut(s)	145
FaeI	CATG	5 cut(s)	169, 214, 236, 409, 665
FaiI	YATR	9 cut(s)	167, 212, 234, 269, 351, 407, 638, 663, 682
FatI	CATG	5 cut(s)	165, 210, 232, 405, 661
FblI	GTMKAC	1 cut(s)	591
Fnu4HI	GCNGC	3 cut(s)	51, 150, 645
FokI	GGATG	1 cut(s)	554
Fsp4HI	GCNGC	3 cut(s)	51, 150, 645
FspBI	CTAG	4 cut(s)	122, 153, 216, 549
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	3 cut(s)	51, 150, 645
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	3 cut(s)	5, 82, 477
HapII	CCGG	4 cut(s)	79, 144, 305, 509
HhaI	GCGC	1 cut(s)	149
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	5 cut(s)	169, 214, 236, 409, 665
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	3 cut(s)	61, 241, 291
HpaII	CCGG	4 cut(s)	79, 144, 305, 509
HphI	GGTGA	3 cut(s)	215, 250, 319
Hpy166II	GTNNAC	3 cut(s)	421, 592, 605
Hpy188I	TCNGA	1 cut(s)	346
Hpy188III	TCNNGA	5 cut(s)	20, 211, 413, 521, 536
Hpy8I	GTNNAC	3 cut(s)	421, 592, 605
Hpy99I	CGWCG	2 cut(s)	61, 101
HpyAV	CCTTC	4 cut(s)	36, 142, 172, 659
HpyCH4III	ACNGT	3 cut(s)	199, 256, 317
HpyCH4V	TGCA	2 cut(s)	232, 665
HpyF10VI	GCNNNNNNNGC	1 cut(s)	153
HpyF3I	CTNAG	1 cut(s)	461
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	5 cut(s)	169, 214, 236, 409, 665
HspAI	GCGC	1 cut(s)	147
KasI	GGCGCC	1 cut(s)	146
Kzo9I	GATC	1 cut(s)	309
LmnI	GCTCC	2 cut(s)	58, 511
Lsp1109I	GCAGC	1 cut(s)	631
MaeI	CTAG	4 cut(s)	122, 153, 216, 549
MaeIII	GTNAC	2 cut(s)	38, 317
MalI	GATC	1 cut(s)	311
MboI	GATC	1 cut(s)	309
MboII	GAAGA	1 cut(s)	231
MlsI	TGGCCA	1 cut(s)	477
MluCI	AATT	4 cut(s)	112, 172, 326, 615
MluNI	TGGCCA	1 cut(s)	477
Mly113I	GGCGCC	1 cut(s)	147
MmeI	TCCRAC	1 cut(s)	592
MnlI	CCTC	6 cut(s)	16, 86, 120, 217, 439, 532
Mox20I	TGGCCA	1 cut(s)	477
MscI	TGGCCA	1 cut(s)	477
MseI	TTAA	1 cut(s)	441
MslI	CAYNNNNRTG	2 cut(s)	164, 666
Msp20I	TGGCCA	1 cut(s)	477
MspA1I	CMGCKG	1 cut(s)	600
MspI	CCGG	4 cut(s)	79, 144, 305, 509
MspR9I	CCNGG	1 cut(s)	479
MvaI	CCWGG	1 cut(s)	479
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	1 cut(s)	153
NarI	GGCGCC	1 cut(s)	147
NdeII	GATC	1 cut(s)	309
NheI	GCTAGC	1 cut(s)	152
NlaIII	CATG	5 cut(s)	169, 214, 236, 409, 665
NlaIV	GGNNCC	2 cut(s)	54, 148
NmuCI	GTSAC	1 cut(s)	317
NspI	RCATGY	3 cut(s)	236, 409, 665
PagI	TCATGA	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	2 cut(s)	53, 93
PfeI	GAWTC	3 cut(s)	61, 241, 291
PflMI	CCANNNNNTGG	1 cut(s)	484
PkrI	GCNGC	3 cut(s)	52, 151, 646
PluTI	GGCGCC	1 cut(s)	150
PpuMI	RGGWCCY	1 cut(s)	129
Psp5II	RGGWCCY	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	477
PspGI	CCWGG	1 cut(s)	477
PspN4I	GGNNCC	2 cut(s)	54, 148
PspPI	GGNCC	1 cut(s)	129
PspPPI	RGGWCCY	1 cut(s)	129
PstNI	CAGNNNCTG	1 cut(s)	321
RsaI	GTAC	1 cut(s)	450
RsaNI	GTAC	1 cut(s)	449
RseI	CAYNNNNRTG	2 cut(s)	164, 666
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	3 cut(s)	51, 150, 645
Sau3AI	GATC	1 cut(s)	309
Sau96I	GGNCC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	479
SfcI	CTRYAG	2 cut(s)	255, 267
SfoI	GGCGCC	1 cut(s)	148
SinI	GGWCC	1 cut(s)	129
SmiMI	CAYNNNNRTG	2 cut(s)	164, 666
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
Sse9I	AATT	4 cut(s)	112, 172, 326, 615
SsiI	CCGC	4 cut(s)	50, 89, 150, 600
SspDI	GGCGCC	1 cut(s)	146
SspMI	CTAG	4 cut(s)	122, 153, 216, 549
StyD4I	CCNGG	1 cut(s)	477
TaaI	ACNGT	3 cut(s)	199, 256, 317
TaqI	TCGA	3 cut(s)	8, 59, 312
TaqII	GACCGA	1 cut(s)	323
TasI	AATT	4 cut(s)	112, 172, 326, 615
TauI	GCSGC	2 cut(s)	53, 152
TfiI	GAWTC	3 cut(s)	61, 241, 291
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	2 cut(s)	301, 322
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	1 cut(s)	644
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	4 cut(s)	154, 199, 276, 671
TspGWI	ACGGA	3 cut(s)	26, 45, 85
TspRI	CASTG	2 cut(s)	301, 322
Van91I	CCANNNNNTGG	1 cut(s)	484
VpaK11BI	GGWCC	1 cut(s)	129
XapI	RAATTY	1 cut(s)	112
XceI	RCATGY	3 cut(s)	236, 409, 665
XcmI	CCANNNNNNNNNTGG	1 cut(s)	478
XmiI	GTMKAC	1 cut(s)	591
XspI	CTAG	4 cut(s)	122, 153, 216, 549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.