Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008316

Physical Location & Seq

Genomic Coordinates Reverse (-)

23413249 .. 23418564

Gene Structure 5316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G231600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCCTCGATTTTCGTTCCAGAACCTTCACTCCTGCCTAATTCCACAGCTTCCGTTTCTTCTCCGGCTAATCGGCTGCCGTGCCTGCTGCTATGCCGTCCAGACCGACGCCTATTCTCAATCTCCGTCGCCACGTGTCGCGCTTTGGGGCTCCGGAGGTCCTTCAATGTCACCGCCAGCGCCGCCTTGACGTCTAATTCCGTACCGGAAAAGAATGGAATTCATGTAGTTGGCGATTTTATGACGCCTAGAAAGGATTTGCGTGTGGTTAAGCCCACAACTACTGTAGATGAAGCTATAGAACTTCTTGTAGAAAACAGAATCACTGGTTTTCCAGTGATCGACGACGACTGGAAATTGGTCGGTCTTGTTTCAGATTATGACTTATTAGCATTGGACACCATATCAGCCGTCCAAATATTTTACCTGATAGGTCAAGGAAGAACCGACAACAGCATGTTTCCAGAAGTGGACAGCTCTTGGAAAACTTTCAACGAGGTACAGAACTTGCTCAGTAAAACCAATGGGCAGGTGGTCGGCGATTTGATGACACCAGCCCCAGTCGTCGTTAGTGAAACCACTAATCTTGAGGATGTTGCTAGATTATTGCTCGAGACAAAATATCGCAGACTTCCAGTTGTAGATGACAGCGGTAAGCTGGTAGGAATTATTACAAGAGGAAACATCATAAGAGCAGCCCTTCAAATAAAACATGCTAGTGAATCAAAAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0019725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

245

Amino Acids

26.68

Weight (kDa)

6.16

Isoelectric Point (pI)

39.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36910
fragaria_vesca	FvH4_1g16360 FvH4_1g16360
malus_domestica	MD02G1176100.v1.1 MD15G1286500.v1.1
prunus_persica	Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1 Prupe.6G231600_v2.0.a1
pyrus_communis	pycom02g14220 pycom15g24980
rosa_chinensis	RchiOBHm_Chr2g0106231
rosa_laevigata	RLG00000017481
rosa_multiflora	Rmu_sc0008603.1_g000011
rosa_roxburghii	Rroxscaffold_2G00137350
rosa_rugosa	Rorug02G0133700
rosa_samantha	Rh2AG184700 Rh2BG195100 Rh2CG189800 Rh2DG191000
rosa_wichuraiana	Rw2G014420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	520
AatII	GACGTC	1 cut(s)	194
Acc36I	ACCTGC	1 cut(s)	520
AccII	CGCG	1 cut(s)	141
AccIII	TCCGGA	1 cut(s)	153
AciI	CCGC	3 cut(s)	174, 183, 651
AcsI	RAATTY	1 cut(s)	219
AcvI	CACGTG	1 cut(s)	135
AcyI	GRCGYC	3 cut(s)	109, 191, 245
AfaI	GTAC	2 cut(s)	204, 501
AflIII	ACRYGT	1 cut(s)	134
AgsI	TTSAA	3 cut(s)	166, 493, 704
AloI	GAACNNNNNNTCC	2 cut(s)	15, 47
AluBI	AGCT	4 cut(s)	50, 296, 477, 658
AluI	AGCT	4 cut(s)	50, 296, 477, 658
Alw26I	GTCTC	1 cut(s)	608
Ama87I	CYCGRG	1 cut(s)	611
Aor13HI	TCCGGA	1 cut(s)	153
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	76, 88, 695
ApoI	RAATTY	1 cut(s)	219
Asp700I	GAANNNNTTC	1 cut(s)	488
AspLEI	GCGC	2 cut(s)	143, 182
AspS9I	GGNCC	1 cut(s)	159
AsuHPI	GGTGA	1 cut(s)	163
AvaI	CYCGRG	1 cut(s)	611
AvaII	GGWCC	1 cut(s)	159
BanII	GRGCYC	1 cut(s)	153
BbrPI	CACGTG	1 cut(s)	135
BbvI	GCAGC	3 cut(s)	63, 75, 707
BceAI	ACGGC	3 cut(s)	64, 81, 395
BcoDI	GTCTC	1 cut(s)	608
BfaI	CTAG	3 cut(s)	249, 600, 717
BfmI	CTRYAG	2 cut(s)	285, 297
BfoI	RGCGCY	1 cut(s)	183
BfuAI	ACCTGC	1 cut(s)	520
BisI	GCNGC	4 cut(s)	77, 89, 183, 696
BlsI	GCNGC	4 cut(s)	78, 90, 184, 697
Bme18I	GGWCC	1 cut(s)	159
BmeT110I	CYCGRG	1 cut(s)	611
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	152
BmrI	ACTGGG	1 cut(s)	554
BmuI	ACTGGG	1 cut(s)	554
BpuEI	CTTGAG	1 cut(s)	608
BsaAI	YACGTR	1 cut(s)	135
BsaHI	GRCGYC	3 cut(s)	109, 191, 245
BsaWI	WCCGGW	2 cut(s)	153, 205
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bse1I	ACTGG	5 cut(s)	331, 335, 356, 560, 635
BseAI	TCCGGA	1 cut(s)	153
BseGI	GGATG	1 cut(s)	598
BseMII	CTCAG	1 cut(s)	526
BseNI	ACTGG	5 cut(s)	331, 335, 356, 560, 635
BseXI	GCAGC	3 cut(s)	63, 75, 707
Bsh1236I	CGCG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	1 cut(s)	611
BsiSI	CCGG	3 cut(s)	65, 154, 206
BsmAI	GTCTC	1 cut(s)	608
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	611
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp13I	TCCGGA	1 cut(s)	153
Bsp143I	GATC	1 cut(s)	339
BspACI	CCGC	3 cut(s)	174, 183, 651
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	525
BspEI	TCCGGA	1 cut(s)	153
BspFNI	CGCG	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	152
BspMI	ACCTGC	1 cut(s)	520
BsrI	ACTGG	5 cut(s)	331, 335, 356, 560, 635
BssMI	GATC	1 cut(s)	339
BssNI	GRCGYC	3 cut(s)	109, 191, 245
Bst4CI	ACNGT	1 cut(s)	286
BstACI	GRCGYC	3 cut(s)	109, 191, 245
BstBAI	YACGTR	1 cut(s)	135
BstC8I	GCNNGC	2 cut(s)	86, 178
BstDEI	CTNAG	1 cut(s)	512
BstF5I	GGATG	1 cut(s)	598
BstFNI	CGCG	1 cut(s)	141
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	2 cut(s)	143, 182
BstKTI	GATC	1 cut(s)	342
BstMAI	GTCTC	1 cut(s)	608
BstMBI	GATC	1 cut(s)	339
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 182
BstNSI	RCATGY	2 cut(s)	460, 716
BstSFI	CTRYAG	2 cut(s)	285, 297
BstUI	CGCG	1 cut(s)	141
BstV1I	GCAGC	3 cut(s)	63, 75, 707
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	598
BtsIMutI	CAGTG	2 cut(s)	324, 342
BveI	ACCTGC	1 cut(s)	520
Cac8I	GCNNGC	2 cut(s)	86, 178
CfoI	GCGC	2 cut(s)	143, 182
Cfr13I	GGNCC	1 cut(s)	159
CseI	GACGC	2 cut(s)	117, 253
Csp6I	GTAC	2 cut(s)	203, 500
CspCI	CAANNNNNGTGG	2 cut(s)	568, 603
CviAII	CATG	3 cut(s)	224, 457, 713
CviQI	GTAC	2 cut(s)	203, 500
DdeI	CTNAG	1 cut(s)	512
DpnI	GATC	1 cut(s)	341
DpnII	GATC	1 cut(s)	339
Eco24I	GRGCYC	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	159
Eco72I	CACGTG	1 cut(s)	135
Eco88I	CYCGRG	1 cut(s)	611
EcoO109I	RGGNCCY	1 cut(s)	159
EcoRI	GAATTC	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	153
FaeI	CATG	3 cut(s)	227, 460, 716
FatI	CATG	3 cut(s)	223, 456, 712
Fnu4HI	GCNGC	4 cut(s)	77, 89, 183, 696
FokI	GGATG	1 cut(s)	605
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	4 cut(s)	77, 89, 183, 696
FspBI	CTAG	3 cut(s)	249, 600, 717
GlaI	GCGC	2 cut(s)	142, 181
GluI	GCNGC	4 cut(s)	77, 89, 183, 696
HaeII	RGCGCY	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	65, 154, 206
HgaI	GACGC	2 cut(s)	117, 253
HhaI	GCGC	2 cut(s)	143, 182
Hin1I	GRCGYC	3 cut(s)	109, 191, 245
Hin1II	CATG	3 cut(s)	227, 460, 716
Hin6I	GCGC	2 cut(s)	141, 180
HinP1I	GCGC	2 cut(s)	141, 180
HinfI	GANTC	2 cut(s)	321, 722
HpaII	CCGG	3 cut(s)	65, 154, 206
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	472
Hpy188I	TCNGA	1 cut(s)	376
Hpy188III	TCNNGA	6 cut(s)	20, 101, 154, 464, 587, 613
Hpy8I	GTNNAC	1 cut(s)	472
Hpy99I	CGWCG	5 cut(s)	111, 131, 347, 350, 569
HpyAV	CCTTC	3 cut(s)	36, 172, 710
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4IV	ACGT	2 cut(s)	134, 191
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 182
HpyF3I	CTNAG	1 cut(s)	512
HpySE526I	ACGT	2 cut(s)	134, 191
Hsp92I	GRCGYC	3 cut(s)	109, 191, 245
Hsp92II	CATG	3 cut(s)	227, 460, 716
HspAI	GCGC	2 cut(s)	141, 180
Kpn2I	TCCGGA	1 cut(s)	153
Kzo9I	GATC	1 cut(s)	339
LmnI	GCTCC	1 cut(s)	156
Lsp1109I	GCAGC	3 cut(s)	63, 75, 707
MaeI	CTAG	3 cut(s)	249, 600, 717
MaeII	ACGT	2 cut(s)	134, 191
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	1 cut(s)	341
MboI	GATC	1 cut(s)	339
MboII	GAAGA	2 cut(s)	51, 453
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	5 cut(s)	40, 196, 219, 356, 666
MnlI	CCTC	5 cut(s)	16, 150, 490, 583, 671
MroI	TCCGGA	1 cut(s)	153
MroXI	GAANNNNTTC	1 cut(s)	488
MseI	TTAA	1 cut(s)	270
MslI	CAYNNNNRTG	1 cut(s)	717
MspA1I	CMGCKG	1 cut(s)	651
MspI	CCGG	3 cut(s)	65, 154, 206
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	85, 182
NdeII	GATC	1 cut(s)	339
NlaIII	CATG	3 cut(s)	227, 460, 716
NlaIV	GGNNCC	1 cut(s)	152
NmuCI	GTSAC	1 cut(s)	169
NspI	RCATGY	2 cut(s)	460, 716
PaeR7I	CTCGAG	1 cut(s)	611
PaqCI	CACCTGC	1 cut(s)	520
PdmI	GAANNNNTTC	1 cut(s)	488
PfeI	GAWTC	2 cut(s)	321, 722
PkrI	GCNGC	4 cut(s)	78, 90, 184, 697
PmaCI	CACGTG	1 cut(s)	135
PmlI	CACGTG	1 cut(s)	135
Ppu21I	YACGTR	1 cut(s)	135
PpuMI	RGGWCCY	1 cut(s)	159
Psp5II	RGGWCCY	1 cut(s)	159
PspCI	CACGTG	1 cut(s)	135
PspN4I	GGNNCC	1 cut(s)	152
PspPI	GGNCC	1 cut(s)	159
PspPPI	RGGWCCY	1 cut(s)	159
RsaI	GTAC	2 cut(s)	204, 501
RsaNI	GTAC	2 cut(s)	203, 500
RseI	CAYNNNNRTG	1 cut(s)	717
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	4 cut(s)	77, 89, 183, 696
Sau3AI	GATC	1 cut(s)	339
Sau96I	GGNCC	1 cut(s)	159
SduI	GDGCHC	1 cut(s)	153
SfcI	CTRYAG	2 cut(s)	285, 297
Sfr274I	CTCGAG	1 cut(s)	611
SinI	GGWCC	1 cut(s)	159
SlaI	CTCGAG	1 cut(s)	611
SmiMI	CAYNNNNRTG	1 cut(s)	717
SmlI	CTYRAG	2 cut(s)	587, 611
SmoI	CTYRAG	2 cut(s)	587, 611
Sse9I	AATT	5 cut(s)	40, 196, 219, 356, 666
SsiI	CCGC	3 cut(s)	174, 183, 651
SspI	AATATT	1 cut(s)	420
SspMI	CTAG	3 cut(s)	249, 600, 717
TaaI	ACNGT	1 cut(s)	286
TaiI	ACGT	2 cut(s)	137, 194
TaqI	TCGA	3 cut(s)	8, 342, 612
TaqII	GACCGA	2 cut(s)	120, 353
TasI	AATT	5 cut(s)	40, 196, 219, 356, 666
TauI	GCSGC	1 cut(s)	185
TfiI	GAWTC	2 cut(s)	321, 722
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	2 cut(s)	331, 342
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	3 cut(s)	76, 88, 695
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	2 cut(s)	212, 306
TspGWI	ACGGA	3 cut(s)	43, 115, 190
TspRI	CASTG	2 cut(s)	331, 342
VpaK11BI	GGWCC	1 cut(s)	159
XapI	RAATTY	1 cut(s)	219
XceI	RCATGY	2 cut(s)	460, 716
XcmI	CCANNNNNNNNNTGG	1 cut(s)	529
XhoI	CTCGAG	1 cut(s)	611
XmnI	GAANNNNTTC	1 cut(s)	488
XspI	CTAG	3 cut(s)	249, 600, 717
ZraI	GACGTC	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.