Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004975

Physical Location & Seq

Genomic Coordinates Forward (+)

17414083 .. 17416386

Gene Structure 2304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G36930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGATATCACAGAGAGAAGAAAGAGAAGAGAAGAAGCAGAGAGTGATGGGAGATAAGAAATTGATTTCATCTTCTTCTTCTTCCTCGGTTTACGATACTCGTATCAATCATCATCTTCATCATCCTCCGTCTTCTTCCGACGAAATCTCTCAGTTTCTCCGGCATATTTTCGACCGTTCTTCTCCTTTACCTTCTTACTACTCCCCGGCGACGACTACAACGACGGCGTCTTTGATTGGTGTGCACGGGAGCGGTGACCCACATGCAGATAACTCGAGAAGTCTCGTTTCTCATCATCCACCGTCAGATTCTGTGCTTATGTCGAAACGTGTCGGAGATTTCTCTGAGGTTTTAATCGGCGGAGGATCAGGCTCAGCCGCCGCGTGTTTTGGTTTCTCCGGTGGTGGTAATAATAACAACGTTCAAGGAAATAGCTCTGGGACTCGAGTATCGTCTTCTTCCGTTGGAGCTAGTGGCAACGAGACAGATGAGTATGACTGTGAAAGCGAGGAAGGAGGAGAAGCTGTAGTTGATGAAGCTCCCTCTTCCAAGTCAGGTCCTTCTTCTCGTAGTTCATCTAAAAGATGCAGAGCTGCTGAAGTTCATAATCTCTCTGAGAAGAGGAGGAGAAGTAGAATTAATGAAAAAATGAAAGCTTTACAAAGTCTCATCCCTAATTCAAATAAGACGGATAAGGCTTCAATGCTTGATGAAGCCATTGAGTATCTGAAACAGCTTCAGCTCCAAGTTCAGATGTTGACTATGAGAAATGGAATAAACTTGCATCCTTTGTGTTTACCTGGAACTACATTACACCCATTGCAACTCTCTCAGATTCGACCCCCTGAAGCAACCAATGATCCTCTGCTTAATCATACCAATCAGTTTGCTTCGACTTCTAATGCACCGGAAATGATCAATACTGTGGCTTCTTCATACGCTTTGGAACCTTCTATTCGCAGTCACTTTGGACCTTTCCCTCTCCTTACTTCACCCGTGGAGATGAGTCGGGAAGGTGGGTTAACTCATCCAAGGTTGAACATTGGTCATTCCAACGCAAACATAACCGGGGAACAAGCTCTGTTTGATGGACAACCTGACCTAAAAGATCGAATTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009639 GO:0009791 GO:0009889 GO:0009900 GO:0009908 GO:0010029 GO:0010047 GO:0010114 GO:0010154 GO:0010187 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048511 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048609 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1900140 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

373

Amino Acids

40.3

Weight (kDa)

6.35

Isoelectric Point (pI)

68.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	200 - 247	3.5e-14	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	206 - 257	4.7e-08	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36930
fragaria_vesca	FvH4_1g16230 FvH4_1g16230 FvH4_1g16230 FvH4_1g16230
malus_domestica	MD02G1174600.v1.1 MD15G1285600.v1.1
prunus_persica	Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1
pyrus_communis	pycom02g14090 pycom15g24860
rosa_chinensis	RchiOBHm_Chr2g0105931
rosa_laevigata	RLG00000017471
rosa_multiflora	Rmu_sc0004367.1_g000014
rosa_roxburghii	Rroxscaffold_2G00137560 Rroxscaffold_2G00137710
rosa_rugosa	Rorug02G0132100 Rorug02G0132200 Rorug02G0132300
rosa_samantha	Rh2AG182600 Rh2BG192600 Rh2CG187200 Rh2DG189200
rosa_wichuraiana	Rw2G014330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	252
AccII	CGCG	1 cut(s)	383
AciI	CCGC	4 cut(s)	252, 360, 378, 381
AclI	AACGTT	1 cut(s)	420
AclWI	GGATC	2 cut(s)	373, 854
AcuI	CTGAAG	3 cut(s)	618, 722, 867
AcyI	GRCGYC	1 cut(s)	227
AflIII	ACRYGT	1 cut(s)	328
AgsI	TTSAA	4 cut(s)	425, 681, 702, 1039
AjnI	CCWGG	1 cut(s)	799
AluBI	AGCT	9 cut(s)	435, 470, 524, 539, 593, 656, 736, 742, 1079
AluI	AGCT	9 cut(s)	435, 470, 524, 539, 593, 656, 736, 742, 1079
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	3 cut(s)	287, 476, 671
Alw44I	GTGCAC	1 cut(s)	242
AlwI	GGATC	2 cut(s)	373, 854
AlwNI	CAGNNNCTG	1 cut(s)	311
Ama87I	CYCGRG	2 cut(s)	274, 444
ApaLI	GTGCAC	1 cut(s)	242
ApeKI	GCWGC	1 cut(s)	593
ArsI	GACNNNNNNTTYG	2 cut(s)	214, 246
AseI	ATTAAT	1 cut(s)	639
AspS9I	GGNCC	2 cut(s)	557, 971
AsuC2I	CCSGG	2 cut(s)	206, 1069
AsuHPI	GGTGA	2 cut(s)	266, 984
AvaI	CYCGRG	2 cut(s)	274, 444
AvaII	GGWCC	2 cut(s)	557, 971
BaeGI	GKGCMC	1 cut(s)	246
BaeI	ACNNNNGTAYC	2 cut(s)	432, 465
BbsI	GAAGAC	2 cut(s)	123, 447
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	580
BccI	CCATC	2 cut(s)	40, 1082
BceAI	ACGGC	1 cut(s)	240
BcgI	CGANNNNNNTGC	2 cut(s)	255, 289
BciT130I	CCWGG	1 cut(s)	801
BclI	TGATCA	1 cut(s)	915
BcnI	CCSGG	2 cut(s)	206, 1069
BcoDI	GTCTC	3 cut(s)	287, 476, 671
BfaI	CTAG	1 cut(s)	471
BfmI	CTRYAG	1 cut(s)	525
BisI	GCNGC	3 cut(s)	378, 381, 594
BlpI	GCTNAGC	1 cut(s)	373
BlsI	GCNGC	3 cut(s)	379, 382, 595
Bme1390I	CCNGG	3 cut(s)	206, 801, 1069
Bme18I	GGWCC	2 cut(s)	557, 971
BmeT110I	CYCGRG	2 cut(s)	274, 444
BmgT120I	GGNCC	2 cut(s)	557, 971
BmiI	GGNNCC	1 cut(s)	948
BmrFI	CCNGG	3 cut(s)	206, 801, 1069
BmsI	GCATC	2 cut(s)	575, 793
BpiI	GAAGAC	2 cut(s)	123, 447
Bpu1102I	GCTNAGC	1 cut(s)	373
BpuMI	CCSGG	2 cut(s)	206, 1069
BsaHI	GRCGYC	1 cut(s)	227
BsaJI	CCNNGG	5 cut(s)	84, 204, 996, 1031, 1068
BsaWI	WCCGGW	2 cut(s)	398, 907
BsaXI	ACNNNNNCTCC	4 cut(s)	510, 540, 616, 646
Bse3DI	GCAATG	1 cut(s)	818
BseBI	CCWGG	1 cut(s)	801
BseDI	CCNNGG	5 cut(s)	84, 204, 996, 1031, 1068
BseGI	GGATG	5 cut(s)	121, 295, 669, 784, 1027
BseMI	GCAATG	1 cut(s)	818
BseMII	CTCAG	5 cut(s)	164, 336, 387, 606, 845
BseRI	GAGGAG	3 cut(s)	531, 637, 640
BseSI	GKGCMC	1 cut(s)	246
BseXI	GCAGC	1 cut(s)	580
Bsh1236I	CGCG	1 cut(s)	383
Bsh1285I	CGRYCG	1 cut(s)	175
BsiEI	CGRYCG	1 cut(s)	175
BsiHKAI	GWGCWC	1 cut(s)	246
BsiHKCI	CYCGRG	2 cut(s)	274, 444
BsiSI	CCGG	5 cut(s)	160, 206, 399, 908, 1068
BslFI	GGGAC	1 cut(s)	454
BsmAI	GTCTC	3 cut(s)	287, 476, 671
BsmFI	GGGAC	1 cut(s)	454
BsoBI	CYCGRG	2 cut(s)	274, 444
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	4 cut(s)	365, 859, 915, 1108
Bsp1720I	GCTNAGC	1 cut(s)	373
BspACI	CCGC	4 cut(s)	252, 360, 378, 381
BspCNI	CTCAG	5 cut(s)	163, 337, 386, 607, 844
BspFNI	CGCG	1 cut(s)	383
BspLI	GGNNCC	1 cut(s)	948
BspPI	GGATC	2 cut(s)	373, 854
BsrBI	CCGCTC	1 cut(s)	252
BsrDI	GCAATG	1 cut(s)	818
BssECI	CCNNGG	5 cut(s)	84, 204, 996, 1031, 1068
BssMI	GATC	4 cut(s)	365, 859, 915, 1108
BssNI	GRCGYC	1 cut(s)	227
BssT1I	CCWWGG	1 cut(s)	1031
Bst2UI	CCWGG	1 cut(s)	801
Bst4CI	ACNGT	4 cut(s)	176, 303, 500, 925
Bst6I	CTCTTC	3 cut(s)	21, 550, 614
BstACI	GRCGYC	1 cut(s)	227
BstDEI	CTNAG	5 cut(s)	150, 345, 373, 615, 831
BstDSI	CCRYGG	1 cut(s)	996
BstEII	GGTNACC	1 cut(s)	254
BstF5I	GGATG	5 cut(s)	121, 295, 669, 784, 1027
BstFNI	CGCG	1 cut(s)	383
BstKTI	GATC	4 cut(s)	368, 862, 918, 1111
BstMAI	GTCTC	3 cut(s)	287, 476, 671
BstMBI	GATC	4 cut(s)	365, 859, 915, 1108
BstMCI	CGRYCG	1 cut(s)	175
BstNI	CCWGG	1 cut(s)	801
BstNSI	RCATGY	1 cut(s)	266
BstPI	GGTNACC	1 cut(s)	254
BstSCI	CCNGG	3 cut(s)	204, 799, 1067
BstSFI	CTRYAG	1 cut(s)	525
BstSLI	GKGCMC	1 cut(s)	246
BstUI	CGCG	1 cut(s)	383
BstV1I	GCAGC	1 cut(s)	580
BstV2I	GAAGAC	2 cut(s)	123, 447
BtgI	CCRYGG	1 cut(s)	996
BtsCI	GGATG	5 cut(s)	121, 295, 669, 784, 1027
CaiI	CAGNNNCTG	1 cut(s)	311
Cfr13I	GGNCC	2 cut(s)	557, 971
CseI	GACGC	1 cut(s)	216
CviAII	CATG	1 cut(s)	263
DdeI	CTNAG	5 cut(s)	150, 345, 373, 615, 831
DpnI	GATC	4 cut(s)	367, 861, 917, 1110
DpnII	GATC	4 cut(s)	365, 859, 915, 1108
Eam1104I	CTCTTC	3 cut(s)	21, 550, 614
EarI	CTCTTC	3 cut(s)	21, 550, 614
EciI	GGCGGA	1 cut(s)	375
Eco130I	CCWWGG	1 cut(s)	1031
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	2 cut(s)	557, 971
Eco57I	CTGAAG	3 cut(s)	618, 722, 867
Eco88I	CYCGRG	2 cut(s)	274, 444
Eco91I	GGTNACC	1 cut(s)	254
EcoO109I	RGGNCCY	1 cut(s)	557
EcoO65I	GGTNACC	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	799
EcoRV	GATATC	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	1031
ErhI	CCWWGG	1 cut(s)	1031
FaeI	CATG	1 cut(s)	266
FaiI	YATR	9 cut(s)	165, 264, 320, 495, 606, 764, 876, 937, 1064
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	1 cut(s)	262
FbaI	TGATCA	1 cut(s)	915
Fnu4HI	GCNGC	3 cut(s)	378, 381, 594
FokI	GGATG	5 cut(s)	108, 282, 656, 771, 1014
Fsp4HI	GCNGC	3 cut(s)	378, 381, 594
FspBI	CTAG	1 cut(s)	471
GluI	GCNGC	3 cut(s)	378, 381, 594
HapII	CCGG	5 cut(s)	160, 206, 399, 908, 1068
HgaI	GACGC	1 cut(s)	216
Hin1I	GRCGYC	1 cut(s)	227
Hin1II	CATG	1 cut(s)	266
HincII	GTYRAC	2 cut(s)	759, 1023
HindII	GTYRAC	2 cut(s)	759, 1023
HindIII	AAGCTT	1 cut(s)	654
HinfI	GANTC	4 cut(s)	308, 442, 835, 1006
HpaI	GTTAAC	1 cut(s)	1023
HpaII	CCGG	5 cut(s)	160, 206, 399, 908, 1068
HphI	GGTGA	2 cut(s)	266, 984
Hpy166II	GTNNAC	5 cut(s)	91, 244, 759, 797, 1023
Hpy188I	TCNGA	8 cut(s)	139, 307, 335, 346, 616, 729, 753, 834
Hpy188III	TCNNGA	2 cut(s)	276, 1010
Hpy8I	GTNNAC	5 cut(s)	91, 244, 759, 797, 1023
Hpy99I	CGWCG	3 cut(s)	143, 214, 226
HpyAV	CCTTC	5 cut(s)	201, 506, 570, 960, 1007
HpyCH4III	ACNGT	4 cut(s)	176, 303, 500, 925
HpyCH4IV	ACGT	2 cut(s)	328, 420
HpyCH4V	TGCA	6 cut(s)	244, 266, 588, 784, 823, 905
HpyF3I	CTNAG	5 cut(s)	150, 345, 373, 615, 831
HpySE526I	ACGT	2 cut(s)	328, 420
Hsp92I	GRCGYC	1 cut(s)	227
Hsp92II	CATG	1 cut(s)	266
Ksp22I	TGATCA	1 cut(s)	915
KspAI	GTTAAC	1 cut(s)	1023
Kzo9I	GATC	4 cut(s)	365, 859, 915, 1108
LmnI	GCTCC	4 cut(s)	249, 467, 544, 747
Lsp1109I	GCAGC	1 cut(s)	580
LweI	GCATC	2 cut(s)	575, 793
MaeI	CTAG	1 cut(s)	471
MaeII	ACGT	2 cut(s)	328, 420
MaeIII	GTNAC	2 cut(s)	254, 962
MalI	GATC	4 cut(s)	367, 861, 917, 1110
MbiI	CCGCTC	1 cut(s)	252
MboI	GATC	4 cut(s)	365, 859, 915, 1108
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	4 cut(s)	59, 636, 676, 1113
MlyI	GAGTC	2 cut(s)	436, 1015
MmeI	TCCRAC	4 cut(s)	162, 313, 445, 1077
MseI	TTAA	4 cut(s)	353, 639, 870, 1022
MspI	CCGG	5 cut(s)	160, 206, 399, 908, 1068
MspR9I	CCNGG	3 cut(s)	206, 801, 1069
MvaI	CCWGG	1 cut(s)	801
MvnI	CGCG	1 cut(s)	383
NciI	CCSGG	2 cut(s)	206, 1069
NdeII	GATC	4 cut(s)	365, 859, 915, 1108
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	1 cut(s)	948
NmuCI	GTSAC	2 cut(s)	254, 962
NspI	RCATGY	1 cut(s)	266
PaeR7I	CTCGAG	2 cut(s)	274, 444
PcsI	WCGNNNNNNNCGW	1 cut(s)	218
PfeI	GAWTC	2 cut(s)	308, 835
PflFI	GACNNNGTC	1 cut(s)	226
PkrI	GCNGC	3 cut(s)	379, 382, 595
PleI	GAGTC	2 cut(s)	436, 1014
PpsI	GAGTC	2 cut(s)	436, 1014
PpuMI	RGGWCCY	1 cut(s)	557
PshBI	ATTAAT	1 cut(s)	639
Psp1406I	AACGTT	1 cut(s)	420
Psp5II	RGGWCCY	1 cut(s)	557
Psp6I	CCWGG	1 cut(s)	799
PspEI	GGTNACC	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	799
PspN4I	GGNNCC	1 cut(s)	948
PspPI	GGNCC	2 cut(s)	557, 971
PspPPI	RGGWCCY	1 cut(s)	557
PspXI	VCTCGAGB	1 cut(s)	444
PstNI	CAGNNNCTG	1 cut(s)	311
PsyI	GACNNNGTC	1 cut(s)	226
SaqAI	TTAA	4 cut(s)	353, 639, 870, 1022
SatI	GCNGC	3 cut(s)	378, 381, 594
Sau3AI	GATC	4 cut(s)	365, 859, 915, 1108
Sau96I	GGNCC	2 cut(s)	557, 971
SchI	GAGTC	2 cut(s)	436, 1015
ScrFI	CCNGG	3 cut(s)	206, 801, 1069
SduI	GDGCHC	1 cut(s)	246
SfaNI	GCATC	2 cut(s)	575, 793
SfcI	CTRYAG	1 cut(s)	525
Sfr274I	CTCGAG	2 cut(s)	274, 444
SinI	GGWCC	2 cut(s)	557, 971
SlaI	CTCGAG	2 cut(s)	274, 444
SmlI	CTYRAG	2 cut(s)	274, 444
SmoI	CTYRAG	2 cut(s)	274, 444
Sse9I	AATT	4 cut(s)	59, 636, 676, 1113
SsiI	CCGC	4 cut(s)	252, 360, 378, 381
SspMI	CTAG	1 cut(s)	471
StyD4I	CCNGG	3 cut(s)	204, 799, 1067
StyI	CCWWGG	1 cut(s)	1031
TaaI	ACNGT	4 cut(s)	176, 303, 500, 925
TaiI	ACGT	2 cut(s)	331, 423
TaqI	TCGA	7 cut(s)	171, 275, 323, 445, 838, 893, 1111
TasI	AATT	4 cut(s)	59, 636, 676, 1113
TauI	GCSGC	2 cut(s)	380, 383
TfiI	GAWTC	2 cut(s)	308, 835
Tru1I	TTAA	4 cut(s)	353, 639, 870, 1022
Tru9I	TTAA	4 cut(s)	353, 639, 870, 1022
TseFI	GTSAC	2 cut(s)	254, 962
TseI	GCWGC	1 cut(s)	593
Tsp45I	GTSAC	2 cut(s)	254, 962
TspDTI	ATGAA	9 cut(s)	57, 107, 549, 564, 593, 657, 665, 726, 924
TspGWI	ACGGA	3 cut(s)	117, 451, 704
Tth111I	GACNNNGTC	1 cut(s)	226
VneI	GTGCAC	1 cut(s)	242
VpaK11BI	GGWCC	2 cut(s)	557, 971
VspI	ATTAAT	1 cut(s)	639
XceI	RCATGY	1 cut(s)	266
XhoI	CTCGAG	2 cut(s)	274, 444
XspI	CTAG	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.