Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004975

Physical Location & Seq

Genomic Coordinates Reverse (-)

26018023 .. 26021514

Gene Structure 3492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1285600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGGGGACCCTTACGAATATGATCGGTATTACAAAAATGCCACTTGTTCTTCTTCTTCTTCTCAAGCTGCTCAGCCGCATTCGGCCCCCGACGACATGTCGCTTTTTCTGCAGCAGATTTTGGTGCGCTCGTCTAGTTCTTTGGCCTCCGTTGTGGCCCAGCCCGGGAAGGCCCCGCAGTTTTTGTTTTCGCCCTCGCCGTCCGTTGGTGCTCTTCTGCCTGGTAATCTCGAGCATCCGTGCCACTCTGGTTTCTTCGGGGACGAGATCACGGCCATTGATTCTTCCTCCGCGTTTGTGTCCGCCGGTAATCCCAATGTGTCGTCGTCTTCGTTGGGGGCGAGTGAGAACGAGGCCGACGAGTATGACTGTGAAAGCGAGGAGGGTCTTGAAGCGTTTGTGGAAGCGAAGTCAGGTGGGGGACGGAGTTCTTCAAAGAGAAGCAGAGCTGCAGAAGTTCATAATTTGTCTGAAAAGACGGACAAAGCTTCTATGCTTGATGAAGCCATTGAGTACCTCAAGCAGCTTCAGCTTCAAGTTCAGATGTTATCAATGAGAAATGGTATGAGTCTACATTCTTTGTGCCTACCTGGAACTCTGCAACCTGTACAGCCCTCGCAAATGAGAATGGGGCTTGGTGAGGAAATTAGGCCTCTGCATTTGGACATGACAAATTTGTTCAATTTATCCAACCAATGCACCGCTGCAAACGAGTCATATGTACCAGACATGTCAAATGTAGTTAATTCAGAAACGTCGTTTGGGTTGGAACCGTCAATTAAGGCTCACTTGAGACCCTTTCAACTGCCAGCCTCATCTCAGGAAATCTGCAGGGAGGACCTTTTGCAGCACCAACAAATTAATGTAAATCGTTCGGAGATGAATCTTTCAGCCACTGATTCACTTCCCTTTAACGCACGAGTATCAGATCTGAAGGGTACGTTTGATGCACGCATCATAGGAAGGGACAGGCAGGAAGGCGGTCTCCTGAATACTATAGAACAATACTTTCACATTGATAAGAAGAAGGGTCTCGAACGATGCCATCAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009639 GO:0009791 GO:0009889 GO:0009900 GO:0009908 GO:0010029 GO:0010047 GO:0010114 GO:0010154 GO:0010187 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048511 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048609 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1900140 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

352

Amino Acids

38.37

Weight (kDa)

5.04

Isoelectric Point (pI)

66.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36930
fragaria_vesca	FvH4_1g16230 FvH4_1g16230 FvH4_1g16230 FvH4_1g16230
malus_domestica	MD02G1174600.v1.1 MD15G1285600.v1.1
prunus_persica	Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1
pyrus_communis	pycom02g14090 pycom15g24860
rosa_chinensis	RchiOBHm_Chr2g0105931
rosa_laevigata	RLG00000017471
rosa_multiflora	Rmu_sc0004367.1_g000014
rosa_roxburghii	Rroxscaffold_2G00137560 Rroxscaffold_2G00137710
rosa_rugosa	Rorug02G0132100 Rorug02G0132200 Rorug02G0132300
rosa_samantha	Rh2AG182600 Rh2BG192600 Rh2CG187200 Rh2DG189200
rosa_wichuraiana	Rw2G014330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	571
AccII	CGCG	1 cut(s)	293
AciI	CCGC	6 cut(s)	77, 176, 291, 303, 702, 981
AcoI	YGGCCR	1 cut(s)	273
AcsI	RAATTY	1 cut(s)	673
AcuI	CTGAAG	2 cut(s)	512, 953
AfaI	GTAC	4 cut(s)	515, 609, 723, 940
AfiI	CCNNNNNNNGG	2 cut(s)	165, 206
AflIII	ACRYGT	2 cut(s)	96, 729
AgsI	TTSAA	5 cut(s)	392, 435, 536, 682, 803
AhdI	GACNNNNNGTC	1 cut(s)	97
AjnI	CCWGG	2 cut(s)	220, 589
AjuI	GAANNNNNNNTTGG	2 cut(s)	744, 776
AluBI	AGCT	5 cut(s)	68, 449, 488, 526, 532
AluI	AGCT	5 cut(s)	68, 449, 488, 526, 532
Alw21I	GWGCWC	1 cut(s)	214
Alw26I	GTCTC	3 cut(s)	787, 989, 1037
AlwNI	CAGNNNCTG	1 cut(s)	896
Ama87I	CYCGRG	2 cut(s)	164, 230
AoxI	GGCC	7 cut(s)	84, 144, 156, 171, 273, 354, 650
ApeKI	GCWGC	6 cut(s)	68, 112, 449, 523, 704, 847
ApoI	RAATTY	1 cut(s)	673
AseI	ATTAAT	1 cut(s)	861
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	5 cut(s)	7, 85, 157, 172, 838
AsuC2I	CCSGG	2 cut(s)	165, 166
AsuHPI	GGTGA	1 cut(s)	650
AvaI	CYCGRG	2 cut(s)	164, 230
AvaII	GGWCC	2 cut(s)	7, 838
BauI	CACGAG	1 cut(s)	918
BbsI	GAAGAC	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	214
BbvI	GCAGC	6 cut(s)	55, 124, 436, 535, 691, 859
BccI	CCATC	1 cut(s)	1053
BceAI	ACGGC	2 cut(s)	184, 288
BciT130I	CCWGG	2 cut(s)	222, 591
BcnI	CCSGG	2 cut(s)	165, 166
BcoDI	GTCTC	3 cut(s)	787, 989, 1037
BfaI	CTAG	1 cut(s)	135
BfmI	CTRYAG	4 cut(s)	110, 450, 829, 996
BglII	AGATCT	1 cut(s)	928
BisI	GCNGC	7 cut(s)	69, 77, 113, 450, 524, 705, 848
BlpI	GCTNAGC	1 cut(s)	72
BlsI	GCNGC	7 cut(s)	70, 78, 114, 451, 525, 706, 849
Bme1390I	CCNGG	4 cut(s)	165, 166, 222, 591
Bme18I	GGWCC	2 cut(s)	7, 838
BmeRI	GACNNNNNGTC	1 cut(s)	97
BmeT110I	CYCGRG	2 cut(s)	164, 230
BmgT120I	GGNCC	5 cut(s)	7, 85, 157, 172, 838
BmiI	GGNNCC	5 cut(s)	8, 9, 87, 174, 771
BmrFI	CCNGG	4 cut(s)	165, 166, 222, 591
BmsI	GCATC	4 cut(s)	244, 937, 963, 1031
BpiI	GAAGAC	1 cut(s)	321
Bpu1102I	GCTNAGC	1 cut(s)	72
BpuEI	CTTGAG	3 cut(s)	48, 503, 811
BpuMI	CCSGG	2 cut(s)	165, 166
BsaI	GGTCTC	3 cut(s)	787, 989, 1037
BsaJI	CCNNGG	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 206
Bse118I	RCCGGY	1 cut(s)	305
BseBI	CCWGG	2 cut(s)	222, 591
BseDI	CCNNGG	1 cut(s)	164
BseGI	GGATG	1 cut(s)	235
BseLI	CCNNNNNNNGG	2 cut(s)	165, 206
BseMII	CTCAG	2 cut(s)	86, 833
BseRI	GAGGAG	1 cut(s)	395
BseXI	GCAGC	6 cut(s)	55, 124, 436, 535, 691, 859
BseYI	CCCAGC	1 cut(s)	159
Bsh1236I	CGCG	1 cut(s)	293
BshFI	GGCC	7 cut(s)	86, 146, 158, 173, 275, 356, 652
BsiHKAI	GWGCWC	1 cut(s)	214
BsiHKCI	CYCGRG	2 cut(s)	164, 230
BsiSI	CCGG	2 cut(s)	165, 306
BslFI	GGGAC	4 cut(s)	20, 275, 435, 980
BslI	CCNNNNNNNGG	2 cut(s)	165, 206
BsmAI	GTCTC	3 cut(s)	787, 989, 1037
BsmFI	GGGAC	4 cut(s)	20, 275, 435, 980
BsmI	GAATGC	1 cut(s)	79
BsnI	GGCC	7 cut(s)	86, 146, 158, 173, 275, 356, 652
Bso31I	GGTCTC	3 cut(s)	787, 989, 1037
BsoBI	CYCGRG	2 cut(s)	164, 230
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp1407I	TGTACA	1 cut(s)	607
Bsp143I	GATC	3 cut(s)	22, 267, 928
Bsp1720I	GCTNAGC	1 cut(s)	72
BspACI	CCGC	6 cut(s)	77, 176, 291, 303, 702, 981
BspANI	GGCC	7 cut(s)	86, 146, 158, 173, 275, 356, 652
BspCNI	CTCAG	2 cut(s)	85, 832
BspFNI	CGCG	1 cut(s)	293
BspLI	GGNNCC	5 cut(s)	8, 9, 87, 174, 771
BspMAI	CTGCAG	3 cut(s)	114, 454, 833
BspQI	GCTCTTC	1 cut(s)	219
BspTNI	GGTCTC	3 cut(s)	787, 989, 1037
BsrFI	RCCGGY	1 cut(s)	305
BsrGI	TGTACA	1 cut(s)	607
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	3 cut(s)	22, 267, 928
BssSI	CACGAG	1 cut(s)	918
Bst2BI	CACGAG	1 cut(s)	918
Bst2UI	CCWGG	2 cut(s)	222, 591
Bst4CI	ACNGT	2 cut(s)	371, 774
Bst6I	CTCTTC	1 cut(s)	219
BstAUI	TGTACA	1 cut(s)	607
BstC8I	GCNNGC	2 cut(s)	810, 952
BstDEI	CTNAG	2 cut(s)	72, 819
BstF5I	GGATG	1 cut(s)	235
BstFNI	CGCG	1 cut(s)	293
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	3 cut(s)	25, 270, 931
BstMAI	GTCTC	3 cut(s)	787, 989, 1037
BstMBI	GATC	3 cut(s)	22, 267, 928
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 529
BstNI	CCWGG	2 cut(s)	222, 591
BstNSI	RCATGY	2 cut(s)	100, 733
BstSCI	CCNGG	4 cut(s)	163, 164, 220, 589
BstSFI	CTRYAG	4 cut(s)	110, 450, 829, 996
BstUI	CGCG	1 cut(s)	293
BstV1I	GCAGC	6 cut(s)	55, 124, 436, 535, 691, 859
BstV2I	GAAGAC	1 cut(s)	321
BstX2I	RGATCY	1 cut(s)	928
BstYI	RGATCY	1 cut(s)	928
BsuRI	GGCC	7 cut(s)	86, 146, 158, 173, 275, 356, 652
BtsCI	GGATG	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	894
Cac8I	GCNNGC	2 cut(s)	810, 952
CaiI	CAGNNNCTG	1 cut(s)	896
CfoI	GCGC	1 cut(s)	129
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	5 cut(s)	7, 85, 157, 172, 838
Cfr9I	CCCGGG	1 cut(s)	164
Csp6I	GTAC	4 cut(s)	514, 608, 722, 939
CviAII	CATG	3 cut(s)	97, 667, 730
CviQI	GTAC	4 cut(s)	514, 608, 722, 939
DdeI	CTNAG	2 cut(s)	72, 819
DpnI	GATC	3 cut(s)	24, 269, 930
DpnII	GATC	3 cut(s)	22, 267, 928
DriI	GACNNNNNGTC	1 cut(s)	97
EaeI	YGGCCR	1 cut(s)	273
Eam1104I	CTCTTC	1 cut(s)	219
Eam1105I	GACNNNNNGTC	1 cut(s)	97
EarI	CTCTTC	1 cut(s)	219
EciI	GGCGGA	1 cut(s)	292
Eco147I	AGGCCT	1 cut(s)	652
Eco31I	GGTCTC	3 cut(s)	787, 989, 1037
Eco47I	GGWCC	2 cut(s)	7, 838
Eco57I	CTGAAG	2 cut(s)	512, 953
Eco88I	CYCGRG	2 cut(s)	164, 230
EcoO109I	RGGNCCY	3 cut(s)	7, 172, 838
EcoRII	CCWGG	2 cut(s)	220, 589
FaeI	CATG	3 cut(s)	100, 670, 733
FalI	AAGNNNNNCTT	2 cut(s)	773, 805
FaqI	GGGAC	4 cut(s)	20, 275, 435, 980
FatI	CATG	3 cut(s)	96, 666, 729
FauI	CCCGC	1 cut(s)	183
FauNDI	CATATG	1 cut(s)	718
FblI	GTMKAC	1 cut(s)	571
Fnu4HI	GCNGC	7 cut(s)	69, 77, 113, 450, 524, 705, 848
FokI	GGATG	1 cut(s)	222
Fsp4HI	GCNGC	7 cut(s)	69, 77, 113, 450, 524, 705, 848
FspBI	CTAG	1 cut(s)	135
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	7 cut(s)	69, 77, 113, 450, 524, 705, 848
GsaI	CCCAGC	1 cut(s)	163
HaeIII	GGCC	7 cut(s)	86, 146, 158, 173, 275, 356, 652
HapII	CCGG	2 cut(s)	165, 306
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	3 cut(s)	100, 670, 733
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HindIII	AAGCTT	1 cut(s)	486
HinfI	GANTC	5 cut(s)	281, 568, 713, 883, 899
HpaII	CCGG	2 cut(s)	165, 306
HphI	GGTGA	1 cut(s)	650
Hpy166II	GTNNAC	1 cut(s)	572
Hpy188I	TCNGA	6 cut(s)	472, 543, 751, 877, 928, 933
Hpy188III	TCNNGA	5 cut(s)	230, 389, 821, 988, 1034
Hpy8I	GTNNAC	1 cut(s)	572
Hpy99I	CGWCG	4 cut(s)	95, 328, 362, 760
HpyAV	CCTTC	5 cut(s)	163, 928, 957, 971, 1021
HpyCH4III	ACNGT	2 cut(s)	371, 774
HpyCH4IV	ACGT	2 cut(s)	755, 941
HpyCH4V	TGCA	9 cut(s)	112, 452, 601, 658, 699, 707, 831, 847, 950
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 529
HpyF3I	CTNAG	2 cut(s)	72, 819
HpySE526I	ACGT	2 cut(s)	755, 941
Hsp92II	CATG	3 cut(s)	100, 670, 733
HspAI	GCGC	1 cut(s)	127
KflI	GGGWCCC	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	22, 267, 928
LguI	GCTCTTC	1 cut(s)	219
Lsp1109I	GCAGC	6 cut(s)	55, 124, 436, 535, 691, 859
LweI	GCATC	4 cut(s)	244, 937, 963, 1031
MaeI	CTAG	1 cut(s)	135
MaeII	ACGT	2 cut(s)	755, 941
MalI	GATC	3 cut(s)	24, 269, 930
MboI	GATC	3 cut(s)	22, 267, 928
MflI	RGATCY	1 cut(s)	928
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	7 cut(s)	463, 645, 673, 682, 745, 777, 858
MlyI	GAGTC	2 cut(s)	577, 722
MmeI	TCCRAC	2 cut(s)	714, 747
MseI	TTAA	4 cut(s)	744, 780, 861, 912
MspA1I	CMGCKG	1 cut(s)	704
MspI	CCGG	2 cut(s)	165, 306
MspR9I	CCNGG	4 cut(s)	165, 166, 222, 591
Mva1269I	GAATGC	1 cut(s)	79
MvaI	CCWGG	2 cut(s)	222, 591
MvnI	CGCG	1 cut(s)	293
MwoI	GCNNNNNNNGC	2 cut(s)	109, 529
NciI	CCSGG	2 cut(s)	165, 166
NdeI	CATATG	1 cut(s)	718
NdeII	GATC	3 cut(s)	22, 267, 928
NlaIII	CATG	3 cut(s)	100, 670, 733
NlaIV	GGNNCC	5 cut(s)	8, 9, 87, 174, 771
NspI	RCATGY	2 cut(s)	100, 733
PaeR7I	CTCGAG	1 cut(s)	230
PceI	AGGCCT	1 cut(s)	652
PciI	ACATGT	2 cut(s)	96, 729
PciSI	GCTCTTC	1 cut(s)	219
PcsI	WCGNNNNNNNCGW	4 cut(s)	197, 329, 338, 357
PctI	GAATGC	1 cut(s)	79
PfeI	GAWTC	3 cut(s)	281, 883, 899
PkrI	GCNGC	7 cut(s)	70, 78, 114, 451, 525, 706, 849
PleI	GAGTC	2 cut(s)	576, 721
PpsI	GAGTC	2 cut(s)	576, 721
PpuMI	RGGWCCY	2 cut(s)	7, 838
PscI	ACATGT	2 cut(s)	96, 729
PshBI	ATTAAT	1 cut(s)	861
Psp5II	RGGWCCY	2 cut(s)	7, 838
Psp6I	CCWGG	2 cut(s)	220, 589
PspFI	CCCAGC	1 cut(s)	159
PspGI	CCWGG	2 cut(s)	220, 589
PspN4I	GGNNCC	5 cut(s)	8, 9, 87, 174, 771
PspPI	GGNCC	5 cut(s)	7, 85, 157, 172, 838
PspPPI	RGGWCCY	2 cut(s)	7, 838
PstI	CTGCAG	3 cut(s)	114, 454, 833
PstNI	CAGNNNCTG	1 cut(s)	896
PsuI	RGATCY	1 cut(s)	928
RsaI	GTAC	4 cut(s)	515, 609, 723, 940
RsaNI	GTAC	4 cut(s)	514, 608, 722, 939
SapI	GCTCTTC	1 cut(s)	219
SaqAI	TTAA	4 cut(s)	744, 780, 861, 912
SatI	GCNGC	7 cut(s)	69, 77, 113, 450, 524, 705, 848
Sau3AI	GATC	3 cut(s)	22, 267, 928
Sau96I	GGNCC	5 cut(s)	7, 85, 157, 172, 838
SchI	GAGTC	2 cut(s)	577, 722
ScrFI	CCNGG	4 cut(s)	165, 166, 222, 591
SduI	GDGCHC	1 cut(s)	214
SfaNI	GCATC	4 cut(s)	244, 937, 963, 1031
SfcI	CTRYAG	4 cut(s)	110, 450, 829, 996
Sfr274I	CTCGAG	1 cut(s)	230
SinI	GGWCC	2 cut(s)	7, 838
SlaI	CTCGAG	1 cut(s)	230
SmaI	CCCGGG	1 cut(s)	166
SmlI	CTYRAG	4 cut(s)	63, 230, 518, 790
SmoI	CTYRAG	4 cut(s)	63, 230, 518, 790
Sse9I	AATT	7 cut(s)	463, 645, 673, 682, 745, 777, 858
SseBI	AGGCCT	1 cut(s)	652
SsiI	CCGC	6 cut(s)	77, 176, 291, 303, 702, 981
SspMI	CTAG	1 cut(s)	135
StuI	AGGCCT	1 cut(s)	652
StyD4I	CCNGG	4 cut(s)	163, 164, 220, 589
TaaI	ACNGT	2 cut(s)	371, 774
TaiI	ACGT	2 cut(s)	758, 944
TaqI	TCGA	2 cut(s)	231, 1035
TasI	AATT	7 cut(s)	463, 645, 673, 682, 745, 777, 858
TatI	WGTACW	1 cut(s)	607
TauI	GCSGC	1 cut(s)	79
TfiI	GAWTC	3 cut(s)	281, 883, 899
Tru1I	TTAA	4 cut(s)	744, 780, 861, 912
Tru9I	TTAA	4 cut(s)	744, 780, 861, 912
TscAI	CASTG	1 cut(s)	901
TseI	GCWGC	6 cut(s)	68, 112, 449, 523, 704, 847
TspDTI	ATGAA	3 cut(s)	449, 516, 896
TspGWI	ACGGA	5 cut(s)	139, 193, 228, 439, 494
TspMI	CCCGGG	1 cut(s)	164
TspRI	CASTG	1 cut(s)	901
VpaK11BI	GGWCC	2 cut(s)	7, 838
VspI	ATTAAT	1 cut(s)	861
XapI	RAATTY	1 cut(s)	673
XceI	RCATGY	2 cut(s)	100, 733
XhoI	CTCGAG	1 cut(s)	230
XmaI	CCCGGG	1 cut(s)	164
XmiI	GTMKAC	1 cut(s)	571
XspI	CTAG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.