Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004975

Physical Location & Seq

Genomic Coordinates Reverse (-)

9295113 .. 9297869

Gene Structure 2757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g16230.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGGAATGGGGGATACATTCGAGTACAATTACCAAAACAACAACTCCTGTTCATCTTCAGCTCCTGCTTCTTCGGTCTCAGTTGCTCAGAGTCATTCGTCCACGGACGAAATCTCTCTTTTTCTGCAGCAAATATTGGTGCGTTCTTCGTCTTTGAGCGGACAGCAGTTCTTGTTTTCGTCTTCGCCGGCTGGTTATGCTCTGCCGGAAAATCTCGGCCGTCCGAGCAATGATAGTTTCGTGGGAGGCGGGATCAGGGGAGTTGATGGTTCCATGGCGGTTGTAACGGCGAGTGGTCCAAATGTATCTTCGTCTTCGGTCGGAGCTAGTGAAAATGAGGCCGACGAGTATGATTGTGAAAGCGAGGAGGGTCTTGAAGCATTGGTAGACGAGGCGGCAGTGAAATCAGGTGGTCGAAGTTCTTCAAAGAGAAGCAGAGCTGCAGAAGTTCATAATTTGTCTGAAAAGAGGAGGAGGAGTAGGATTAATGAGAAAATGAAGGCATTGCAGAATCTCATCCCAAATTCTAACAAGACAGACAAGGCTTCAATGCTTGATGAAGCCATTGAGTACCTCAAACAGCTCCAGCTTCAAGTACAGATGTTATCAATGAGAAATGGCATGAGTTTGCATCCCATGTGCCTACCTGGAGCTTCGCAATTCTCTCAGATAAGAATGGACTTTGGTGGTGAGGAAAATAGGCCTGTGCATTTGAACATGTCAGGCATATTGAATATGAACCAGGATACCTCAACACAAAATTTGTACAATCCAAACCAGTCCTATGTACCAGATTTGTCAAATGTAGTCAATTCAGAAGATGCATTTGGATTGGAAGCATCTATTCAGGCTCACTTGGGACCCTTTCAGCTCCCAAACTCATCCAAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009639 GO:0009791 GO:0009889 GO:0009900 GO:0009908 GO:0010029 GO:0010047 GO:0010114 GO:0010154 GO:0010187 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048511 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048609 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1900140 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

298

Amino Acids

31.95

Weight (kDa)

4.94

Isoelectric Point (pI)

65.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	149 - 196	4e-14	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	155 - 200	1.7e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36930
fragaria_vesca	FvH4_1g16230 FvH4_1g16230 FvH4_1g16230 FvH4_1g16230
malus_domestica	MD02G1174600.v1.1 MD15G1285600.v1.1
prunus_persica	Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1
pyrus_communis	pycom02g14090 pycom15g24860
rosa_chinensis	RchiOBHm_Chr2g0105931
rosa_laevigata	RLG00000017471
rosa_multiflora	Rmu_sc0004367.1_g000014
rosa_roxburghii	Rroxscaffold_2G00137560 Rroxscaffold_2G00137710
rosa_rugosa	Rorug02G0132100 Rorug02G0132200 Rorug02G0132300
rosa_samantha	Rh2AG182600 Rh2BG192600 Rh2CG187200 Rh2DG189200
rosa_wichuraiana	Rw2G014330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	159
AccI	GTMKAC	1 cut(s)	387
AciI	CCGC	4 cut(s)	159, 249, 278, 395
AclWI	GGATC	1 cut(s)	260
AcoI	YGGCCR	1 cut(s)	217
AcsI	RAATTY	2 cut(s)	523, 760
AcuI	CTGAAG	1 cut(s)	42
AfaI	GTAC	5 cut(s)	26, 572, 597, 767, 789
AflIII	ACRYGT	1 cut(s)	717
AgsI	TTSAA	6 cut(s)	377, 426, 549, 593, 715, 733
AjnI	CCWGG	2 cut(s)	646, 741
AjuI	GAANNNNNNNTTGG	4 cut(s)	292, 324, 810, 842
AluBI	AGCT	7 cut(s)	62, 326, 440, 583, 589, 653, 871
AluI	AGCT	7 cut(s)	62, 326, 440, 583, 589, 653, 871
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	1 cut(s)	260
AlwNI	CAGNNNCTG	1 cut(s)	65
AoxI	GGCC	3 cut(s)	217, 339, 701
ApeKI	GCWGC	2 cut(s)	127, 440
ApoI	RAATTY	2 cut(s)	523, 760
AseI	ATTAAT	1 cut(s)	486
Asp700I	GAANNNNTTC	1 cut(s)	421
AspS9I	GGNCC	2 cut(s)	296, 860
AsuHPI	GGTGA	1 cut(s)	701
AvaII	GGWCC	2 cut(s)	296, 860
BbsI	GAAGAC	2 cut(s)	174, 306
BbvI	GCAGC	2 cut(s)	139, 427
BccI	CCATC	1 cut(s)	260
BceAI	ACGGC	2 cut(s)	204, 303
BciT130I	CCWGG	2 cut(s)	648, 743
BciVI	GTATCC	2 cut(s)	7, 739
BcoDI	GTCTC	1 cut(s)	82
BfaI	CTAG	1 cut(s)	327
BfmI	CTRYAG	2 cut(s)	125, 441
BfuI	GTATCC	2 cut(s)	7, 739
BisI	GCNGC	3 cut(s)	128, 396, 441
BlsI	GCNGC	3 cut(s)	129, 397, 442
Bme1390I	CCNGG	2 cut(s)	648, 743
Bme18I	GGWCC	2 cut(s)	296, 860
BmgT120I	GGNCC	2 cut(s)	296, 860
BmiI	GGNNCC	3 cut(s)	271, 861, 862
BmrFI	CCNGG	2 cut(s)	648, 743
BmsI	GCATC	3 cut(s)	640, 811, 848
BpiI	GAAGAC	2 cut(s)	174, 306
BpmI	CTGGAG	2 cut(s)	569, 669
BsaI	GGTCTC	1 cut(s)	82
BsaJI	CCNNGG	3 cut(s)	102, 273, 885
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 59, 463, 493
Bse118I	RCCGGY	1 cut(s)	187
Bse1I	ACTGG	1 cut(s)	778
Bse3DI	GCAATG	2 cut(s)	235, 503
BseBI	CCWGG	2 cut(s)	648, 743
BseDI	CCNNGG	3 cut(s)	102, 273, 885
BseGI	GGATG	3 cut(s)	516, 631, 881
BseMI	GCAATG	2 cut(s)	235, 503
BseMII	CTCAG	3 cut(s)	93, 101, 680
BseNI	ACTGG	1 cut(s)	778
BseRI	GAGGAG	4 cut(s)	380, 484, 487, 490
BseX3I	CGGCCG	1 cut(s)	217
BseXI	GCAGC	2 cut(s)	139, 427
Bsh1285I	CGRYCG	2 cut(s)	220, 321
BshFI	GGCC	3 cut(s)	219, 341, 703
BsiEI	CGRYCG	2 cut(s)	220, 321
BsiSI	CCGG	2 cut(s)	188, 206
BslFI	GGGAC	1 cut(s)	873
BsmAI	GTCTC	1 cut(s)	82
BsmFI	GGGAC	1 cut(s)	873
BsnI	GGCC	3 cut(s)	219, 341, 703
Bso31I	GGTCTC	1 cut(s)	82
Bsp1407I	TGTACA	1 cut(s)	765
Bsp143I	GATC	1 cut(s)	252
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	4 cut(s)	159, 249, 278, 395
BspANI	GGCC	3 cut(s)	219, 341, 703
BspCNI	CTCAG	3 cut(s)	92, 100, 679
BspLI	GGNNCC	3 cut(s)	271, 861, 862
BspMAI	CTGCAG	2 cut(s)	129, 445
BspPI	GGATC	1 cut(s)	260
BspTNI	GGTCTC	1 cut(s)	82
BsrBI	CCGCTC	1 cut(s)	159
BsrDI	GCAATG	2 cut(s)	235, 503
BsrFI	RCCGGY	1 cut(s)	187
BsrGI	TGTACA	1 cut(s)	765
BsrI	ACTGG	1 cut(s)	778
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	3 cut(s)	102, 273, 885
BssMI	GATC	1 cut(s)	252
BssT1I	CCWWGG	2 cut(s)	273, 885
Bst2UI	CCWGG	2 cut(s)	648, 743
BstAUI	TGTACA	1 cut(s)	765
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	3 cut(s)	79, 87, 666
BstDSI	CCRYGG	2 cut(s)	102, 273
BstF5I	GGATG	3 cut(s)	516, 631, 881
BstKTI	GATC	1 cut(s)	255
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	252
BstMCI	CGRYCG	2 cut(s)	220, 321
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 225
BstNI	CCWGG	2 cut(s)	648, 743
BstNSI	RCATGY	1 cut(s)	721
BstSCI	CCNGG	2 cut(s)	646, 741
BstSFI	CTRYAG	2 cut(s)	125, 441
BstV1I	GCAGC	2 cut(s)	139, 427
BstV2I	GAAGAC	2 cut(s)	174, 306
BstZI	CGGCCG	1 cut(s)	217
BsuI	GTATCC	2 cut(s)	7, 739
BsuRI	GGCC	3 cut(s)	219, 341, 703
BtgI	CCRYGG	2 cut(s)	102, 273
BtsCI	GGATG	3 cut(s)	516, 631, 881
BtsI	GCAGTG	1 cut(s)	405
BtsIMutI	CAGTG	1 cut(s)	405
Cac8I	GCNNGC	1 cut(s)	189
CaiI	CAGNNNCTG	1 cut(s)	65
Cfr10I	RCCGGY	1 cut(s)	187
Cfr13I	GGNCC	2 cut(s)	296, 860
Csp6I	GTAC	5 cut(s)	25, 571, 596, 766, 788
CviAII	CATG	4 cut(s)	274, 622, 637, 718
CviQI	GTAC	5 cut(s)	25, 571, 596, 766, 788
DdeI	CTNAG	3 cut(s)	79, 87, 666
DpnI	GATC	1 cut(s)	254
DpnII	GATC	1 cut(s)	252
EaeI	YGGCCR	1 cut(s)	217
EagI	CGGCCG	1 cut(s)	217
EclXI	CGGCCG	1 cut(s)	217
Eco130I	CCWWGG	2 cut(s)	273, 885
Eco147I	AGGCCT	1 cut(s)	703
Eco31I	GGTCTC	1 cut(s)	82
Eco47I	GGWCC	2 cut(s)	296, 860
Eco52I	CGGCCG	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	42
EcoO109I	RGGNCCY	1 cut(s)	860
EcoRII	CCWGG	2 cut(s)	646, 741
EcoT14I	CCWWGG	2 cut(s)	273, 885
EcoT22I	ATGCAT	1 cut(s)	826
ErhI	CCWWGG	2 cut(s)	273, 885
FaeI	CATG	4 cut(s)	277, 625, 640, 721
FaqI	GGGAC	1 cut(s)	873
FatI	CATG	4 cut(s)	273, 621, 636, 717
FauI	CCCGC	1 cut(s)	242
FblI	GTMKAC	1 cut(s)	387
Fnu4HI	GCNGC	3 cut(s)	128, 396, 441
FokI	GGATG	3 cut(s)	503, 618, 868
Fsp4HI	GCNGC	3 cut(s)	128, 396, 441
FspBI	CTAG	1 cut(s)	327
GluI	GCNGC	3 cut(s)	128, 396, 441
GsuI	CTGGAG	2 cut(s)	569, 669
HaeIII	GGCC	3 cut(s)	219, 341, 703
HapII	CCGG	2 cut(s)	188, 206
Hin1II	CATG	4 cut(s)	277, 625, 640, 721
HinfI	GANTC	2 cut(s)	91, 511
HpaII	CCGG	2 cut(s)	188, 206
HphI	GGTGA	1 cut(s)	701
Hpy166II	GTNNAC	2 cut(s)	102, 388
Hpy188I	TCNGA	6 cut(s)	90, 225, 323, 463, 669, 817
Hpy188III	TCNNGA	1 cut(s)	374
Hpy8I	GTNNAC	2 cut(s)	102, 388
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	1 cut(s)	493
HpyCH4V	TGCA	6 cut(s)	127, 443, 508, 631, 709, 824
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 225
HpyF3I	CTNAG	3 cut(s)	79, 87, 666
Hsp92II	CATG	4 cut(s)	277, 625, 640, 721
KflI	GGGWCCC	1 cut(s)	860
KroI	GCCGGC	1 cut(s)	187
KroNI	GCCGGC	1 cut(s)	189
Kzo9I	GATC	1 cut(s)	252
LmnI	GCTCC	5 cut(s)	67, 323, 588, 650, 876
Lsp1109I	GCAGC	2 cut(s)	139, 427
LweI	GCATC	3 cut(s)	640, 811, 848
MaeI	CTAG	1 cut(s)	327
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	1 cut(s)	254
MbiI	CCGCTC	1 cut(s)	159
MboI	GATC	1 cut(s)	252
MboII	GAAGA	8 cut(s)	48, 63, 138, 174, 300, 306, 414, 830
MluCI	AATT	6 cut(s)	28, 454, 523, 659, 760, 811
MlyI	GAGTC	1 cut(s)	100
MmeI	TCCRAC	1 cut(s)	301
Mph1103I	ATGCAT	1 cut(s)	826
MroNI	GCCGGC	1 cut(s)	187
MroXI	GAANNNNTTC	1 cut(s)	421
MseI	TTAA	1 cut(s)	486
MspI	CCGG	2 cut(s)	188, 206
MspR9I	CCNGG	2 cut(s)	648, 743
MvaI	CCWGG	2 cut(s)	648, 743
MwoI	GCNNNNNNNGC	2 cut(s)	197, 225
NaeI	GCCGGC	1 cut(s)	189
NcoI	CCATGG	1 cut(s)	273
NdeII	GATC	1 cut(s)	252
NgoMIV	GCCGGC	1 cut(s)	187
NlaIII	CATG	4 cut(s)	277, 625, 640, 721
NlaIV	GGNNCC	3 cut(s)	271, 861, 862
NmeAIII	GCCGAG	1 cut(s)	195
NsiI	ATGCAT	1 cut(s)	826
NspI	RCATGY	1 cut(s)	721
PceI	AGGCCT	1 cut(s)	703
PciI	ACATGT	1 cut(s)	717
PdiI	GCCGGC	1 cut(s)	189
PdmI	GAANNNNTTC	1 cut(s)	421
PfeI	GAWTC	1 cut(s)	511
PkrI	GCNGC	3 cut(s)	129, 397, 442
PleI	GAGTC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	99
PpuMI	RGGWCCY	1 cut(s)	860
PscI	ACATGT	1 cut(s)	717
PshBI	ATTAAT	1 cut(s)	486
Psp5II	RGGWCCY	1 cut(s)	860
Psp6I	CCWGG	2 cut(s)	646, 741
PspGI	CCWGG	2 cut(s)	646, 741
PspN4I	GGNNCC	3 cut(s)	271, 861, 862
PspPI	GGNCC	2 cut(s)	296, 860
PspPPI	RGGWCCY	1 cut(s)	860
PstI	CTGCAG	2 cut(s)	129, 445
PstNI	CAGNNNCTG	1 cut(s)	65
RsaI	GTAC	5 cut(s)	26, 572, 597, 767, 789
RsaNI	GTAC	5 cut(s)	25, 571, 596, 766, 788
SaqAI	TTAA	1 cut(s)	486
SatI	GCNGC	3 cut(s)	128, 396, 441
Sau3AI	GATC	1 cut(s)	252
Sau96I	GGNCC	2 cut(s)	296, 860
SchI	GAGTC	1 cut(s)	100
ScrFI	CCNGG	2 cut(s)	648, 743
SfaNI	GCATC	3 cut(s)	640, 811, 848
SfcI	CTRYAG	2 cut(s)	125, 441
SinI	GGWCC	2 cut(s)	296, 860
Sse9I	AATT	6 cut(s)	28, 454, 523, 659, 760, 811
SseBI	AGGCCT	1 cut(s)	703
SsiI	CCGC	4 cut(s)	159, 249, 278, 395
SspI	AATATT	1 cut(s)	135
SspMI	CTAG	1 cut(s)	327
StuI	AGGCCT	1 cut(s)	703
StyD4I	CCNGG	2 cut(s)	646, 741
StyI	CCWWGG	2 cut(s)	273, 885
TaqI	TCGA	2 cut(s)	21, 415
TaqII	GACCGA	2 cut(s)	64, 307
TasI	AATT	6 cut(s)	28, 454, 523, 659, 760, 811
TatI	WGTACW	3 cut(s)	24, 595, 765
TauI	GCSGC	1 cut(s)	398
TfiI	GAWTC	1 cut(s)	511
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TscAI	CASTG	1 cut(s)	405
TseI	GCWGC	2 cut(s)	127, 440
TspDTI	ATGAA	5 cut(s)	42, 440, 512, 573, 752
TspGWI	ACGGA	1 cut(s)	119
TspRI	CASTG	1 cut(s)	405
VpaK11BI	GGWCC	2 cut(s)	296, 860
VspI	ATTAAT	1 cut(s)	486
XapI	RAATTY	2 cut(s)	523, 760
XceI	RCATGY	1 cut(s)	721
XmiI	GTMKAC	1 cut(s)	387
XmnI	GAANNNNTTC	1 cut(s)	421
XspI	CTAG	1 cut(s)	327
Zsp2I	ATGCAT	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.