Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004975

Physical Location & Seq

Genomic Coordinates Reverse (-)

19171267 .. 19174146

Gene Structure 2880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g24860.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGATAGCCTTGATGGGTGGCGATTACTCAACAGAACACAACACTAGTACACTACTGACCTGCAGTACAGACGTAAACCCGCCCACTCCGCCACACTCCCAGACGCAACAAAGTAATATCATAAAAAACTCCAACCCCCACAAAAGCTTAAATCCAAAACAACACAAAAAACACAGAGCAAAATTTGCAGCAATGGGGGACACTTACGAATATGATCAGTATTACAAAAATGCCACTTGTTGTTCTTCTTCTTCTCCAGCTGCTCAGCCGCATTCGGCCGCCGACGACATGTCGCTTTTTCTGCAGCAGATTTTGGTGCGCTCGTCTAGTTCTTTGGCCTCCGTTGCGGCCCAGCCCGGGAAGGCCCCGCAGTTTTTGTTTTCGCCCTCGCCGTCCGTTGGTGCTCTTCTGCCTGGTAATCTCGAGCGTCCGTGCCACTCTGGTTTCTTCGGGGACGAGATCACGGCCGTTGATTCTTCCGCCGCGCTTGTGTCCACCGGTAATCCCAATGTGTCGTCGTCTTCGTTCGGGGCGAGTGAGAACGAGGCCGACGAGTATGACTGTGAAAGCGAGGAGGGTCTTGAAGCGTTTGTGGAAGCGAAGTCAGGTGGGGGACGGAGTTCTTCAAAGAGAAGCAGAGCTGCAGAAGTTCATAATTTGTCTGAAAAGAGGAGGAGGAATAGGATCAACGAGAAAATGAAGGCATTGCAAAATCTCATCCCAAATTCTAACAAGACGGACAAAGCTTCTATGCTTGATGAAGCCATTGAGTACCTCAAGCAGCTTCAGCTTCAAATGTTATCAATGAGAAATGGTATGAGTCTACATTCTTTGTGCCTACCTGGAACGCTGCAACCCATACAGCTCTCGCAAATGAGAATGGAGCTTGGTGAGGAAATTAGGCCTCTGCATTTGGACATGACAAATTTGTTCAATTTATCCAACCAATGCACCACTGCAAACGAGTCATATGTACCAGACATGTCAAATGTAGTTAATTCAGAAACGTCGTTTGGGTTGGAACAGTCAATTCAGGCTCACTTGGGACCCTTTCAACTGCCAGCCTCATCTCAGGTAAATTATCCTGCAGGGAGGACCTTTTGCAGCACCAACAAATTAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009639 GO:0009791 GO:0009889 GO:0009900 GO:0009908 GO:0010029 GO:0010047 GO:0010114 GO:0010154 GO:0010187 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048511 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048609 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1900140 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

375

Amino Acids

40.72

Weight (kDa)

6.01

Isoelectric Point (pI)

65.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36930
fragaria_vesca	FvH4_1g16230 FvH4_1g16230 FvH4_1g16230 FvH4_1g16230
malus_domestica	MD02G1174600.v1.1 MD15G1285600.v1.1
prunus_persica	Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1
pyrus_communis	pycom02g14090 pycom15g24860
rosa_chinensis	RchiOBHm_Chr2g0105931
rosa_laevigata	RLG00000017471
rosa_multiflora	Rmu_sc0004367.1_g000014
rosa_roxburghii	Rroxscaffold_2G00137560 Rroxscaffold_2G00137710
rosa_rugosa	Rorug02G0132100 Rorug02G0132200 Rorug02G0132300
rosa_samantha	Rh2AG182600 Rh2BG192600 Rh2CG187200 Rh2DG189200
rosa_wichuraiana	Rw2G014330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	68
AccI	GTMKAC	1 cut(s)	823
AccII	CGCG	1 cut(s)	485
AciI	CCGC	8 cut(s)	80, 89, 269, 279, 347, 368, 480, 483
AclWI	GGATC	1 cut(s)	692
AcoI	YGGCCR	2 cut(s)	276, 465
AcsI	RAATTY	3 cut(s)	182, 724, 925
AcuI	CTGAAG	1 cut(s)	770
AfaI	GTAC	4 cut(s)	49, 67, 773, 975
AfiI	CCNNNNNNNGG	2 cut(s)	357, 398
AflIII	ACRYGT	2 cut(s)	288, 981
AgeI	ACCGGT	1 cut(s)	497
AgsI	TTSAA	5 cut(s)	584, 627, 794, 934, 1055
AhdI	GACNNNNNGTC	1 cut(s)	289
AhlI	ACTAGT	1 cut(s)	44
AjnI	CCWGG	2 cut(s)	412, 841
AjuI	GAANNNNNNNTTGG	2 cut(s)	996, 1028
AluBI	AGCT	8 cut(s)	147, 260, 641, 746, 784, 790, 865, 886
AluI	AGCT	8 cut(s)	147, 260, 641, 746, 784, 790, 865, 886
Alw21I	GWGCWC	1 cut(s)	406
AlwI	GGATC	1 cut(s)	692
Ama87I	CYCGRG	2 cut(s)	356, 422
AoxI	GGCC	7 cut(s)	276, 336, 348, 363, 465, 546, 902
ApeKI	GCWGC	7 cut(s)	188, 260, 304, 641, 781, 850, 1104
ApoI	RAATTY	3 cut(s)	182, 724, 925
AseI	ATTAAT	1 cut(s)	1118
AsiGI	ACCGGT	1 cut(s)	497
AspLEI	GCGC	2 cut(s)	321, 487
AspS9I	GGNCC	4 cut(s)	349, 364, 1046, 1095
AsuC2I	CCSGG	2 cut(s)	357, 358
AsuHPI	GGTGA	1 cut(s)	902
AvaI	CYCGRG	2 cut(s)	356, 422
AvaII	GGWCC	2 cut(s)	1046, 1095
BbsI	GAAGAC	1 cut(s)	513
Bbv12I	GWGCWC	1 cut(s)	406
BbvI	GCAGC	7 cut(s)	200, 247, 316, 628, 793, 837, 1116
BccI	CCATC	1 cut(s)	7
BceAI	ACGGC	3 cut(s)	376, 452, 480
BciT130I	CCWGG	2 cut(s)	414, 843
BclI	TGATCA	1 cut(s)	214
BcnI	CCSGG	2 cut(s)	357, 358
BcuI	ACTAGT	1 cut(s)	44
BfaI	CTAG	2 cut(s)	45, 327
BfmI	CTRYAG	4 cut(s)	61, 302, 642, 1086
BfuAI	ACCTGC	1 cut(s)	68
BlpI	GCTNAGC	1 cut(s)	264
Bme1390I	CCNGG	4 cut(s)	357, 358, 414, 843
Bme18I	GGWCC	2 cut(s)	1046, 1095
BmeRI	GACNNNNNGTC	1 cut(s)	289
BmeT110I	CYCGRG	2 cut(s)	356, 422
BmgT120I	GGNCC	4 cut(s)	349, 364, 1046, 1095
BmiI	GGNNCC	3 cut(s)	366, 1047, 1048
BmrFI	CCNGG	4 cut(s)	357, 358, 414, 843
BpiI	GAAGAC	1 cut(s)	513
BpmI	CTGGAG	1 cut(s)	240
Bpu1102I	GCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	761
BpuMI	CCSGG	2 cut(s)	357, 358
BsaJI	CCNNGG	1 cut(s)	356
BsaWI	WCCGGW	1 cut(s)	497
Bsc4I	CCNNNNNNNGG	2 cut(s)	357, 398
Bse118I	RCCGGY	1 cut(s)	497
Bse3DI	GCAATG	2 cut(s)	198, 704
BseBI	CCWGG	2 cut(s)	414, 843
BseDI	CCNNGG	1 cut(s)	356
BseGI	GGATG	1 cut(s)	717
BseLI	CCNNNNNNNGG	2 cut(s)	357, 398
BseMI	GCAATG	2 cut(s)	198, 704
BseMII	CTCAG	2 cut(s)	278, 1085
BseRI	GAGGAG	3 cut(s)	587, 685, 688
BseX3I	CGGCCG	2 cut(s)	276, 465
BseXI	GCAGC	7 cut(s)	200, 247, 316, 628, 793, 837, 1116
BseYI	CCCAGC	1 cut(s)	351
Bsh1236I	CGCG	1 cut(s)	485
Bsh1285I	CGRYCG	2 cut(s)	279, 468
BshFI	GGCC	7 cut(s)	278, 338, 350, 365, 467, 548, 904
BshTI	ACCGGT	1 cut(s)	497
BsiEI	CGRYCG	2 cut(s)	279, 468
BsiHKAI	GWGCWC	1 cut(s)	406
BsiHKCI	CYCGRG	2 cut(s)	356, 422
BsiSI	CCGG	2 cut(s)	357, 498
BslFI	GGGAC	4 cut(s)	212, 467, 627, 1059
BslI	CCNNNNNNNGG	2 cut(s)	357, 398
BsmFI	GGGAC	4 cut(s)	212, 467, 627, 1059
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	7 cut(s)	278, 338, 350, 365, 467, 548, 904
BsoBI	CYCGRG	2 cut(s)	356, 422
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp143I	GATC	3 cut(s)	214, 459, 684
Bsp1720I	GCTNAGC	1 cut(s)	264
BspACI	CCGC	8 cut(s)	80, 89, 269, 279, 347, 368, 480, 483
BspANI	GGCC	7 cut(s)	278, 338, 350, 365, 467, 548, 904
BspCNI	CTCAG	2 cut(s)	277, 1084
BspFNI	CGCG	1 cut(s)	485
BspLI	GGNNCC	3 cut(s)	366, 1047, 1048
BspMAI	CTGCAG	4 cut(s)	65, 306, 646, 1090
BspMI	ACCTGC	1 cut(s)	68
BspPI	GGATC	1 cut(s)	692
BspQI	GCTCTTC	1 cut(s)	411
BsrDI	GCAATG	2 cut(s)	198, 704
BsrFI	RCCGGY	1 cut(s)	497
BssAI	RCCGGY	1 cut(s)	497
BssECI	CCNNGG	1 cut(s)	356
BssMI	GATC	3 cut(s)	214, 459, 684
Bst2UI	CCWGG	2 cut(s)	414, 843
Bst4CI	ACNGT	2 cut(s)	563, 1026
Bst6I	CTCTTC	1 cut(s)	411
BstAPI	GCANNNNNTGC	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	1062
BstDEI	CTNAG	2 cut(s)	264, 1071
BstF5I	GGATG	1 cut(s)	717
BstFNI	CGCG	1 cut(s)	485
BstHHI	GCGC	2 cut(s)	321, 487
BstKTI	GATC	3 cut(s)	217, 462, 687
BstMBI	GATC	3 cut(s)	214, 459, 684
BstMCI	CGRYCG	2 cut(s)	279, 468
BstMWI	GCNNNNNNNGC	5 cut(s)	88, 185, 301, 344, 787
BstNI	CCWGG	2 cut(s)	414, 843
BstNSI	RCATGY	2 cut(s)	292, 985
BstSCI	CCNGG	4 cut(s)	355, 356, 412, 841
BstSFI	CTRYAG	4 cut(s)	61, 302, 642, 1086
BstUI	CGCG	1 cut(s)	485
BstV1I	GCAGC	7 cut(s)	200, 247, 316, 628, 793, 837, 1116
BstV2I	GAAGAC	1 cut(s)	513
BstZI	CGGCCG	2 cut(s)	276, 465
BsuRI	GGCC	7 cut(s)	278, 338, 350, 365, 467, 548, 904
BtsCI	GGATG	1 cut(s)	717
BtsI	GCAGTG	1 cut(s)	954
BtsIMutI	CAGTG	1 cut(s)	954
BveI	ACCTGC	1 cut(s)	68
Cac8I	GCNNGC	1 cut(s)	1062
CfoI	GCGC	2 cut(s)	321, 487
Cfr10I	RCCGGY	1 cut(s)	497
Cfr13I	GGNCC	4 cut(s)	349, 364, 1046, 1095
Cfr9I	CCCGGG	1 cut(s)	356
CseI	GACGC	2 cut(s)	112, 416
Csp6I	GTAC	4 cut(s)	48, 66, 772, 974
CspAI	ACCGGT	1 cut(s)	497
CviAII	CATG	3 cut(s)	289, 919, 982
CviQI	GTAC	4 cut(s)	48, 66, 772, 974
DdeI	CTNAG	2 cut(s)	264, 1071
DpnI	GATC	3 cut(s)	216, 461, 686
DpnII	GATC	3 cut(s)	214, 459, 684
DriI	GACNNNNNGTC	1 cut(s)	289
EaeI	YGGCCR	2 cut(s)	276, 465
EagI	CGGCCG	2 cut(s)	276, 465
Eam1104I	CTCTTC	1 cut(s)	411
Eam1105I	GACNNNNNGTC	1 cut(s)	289
EarI	CTCTTC	1 cut(s)	411
EciI	GGCGGA	2 cut(s)	78, 469
EclXI	CGGCCG	2 cut(s)	276, 465
Eco147I	AGGCCT	1 cut(s)	904
Eco47I	GGWCC	2 cut(s)	1046, 1095
Eco52I	CGGCCG	2 cut(s)	276, 465
Eco57I	CTGAAG	1 cut(s)	770
Eco88I	CYCGRG	2 cut(s)	356, 422
EcoO109I	RGGNCCY	3 cut(s)	364, 1046, 1095
EcoRII	CCWGG	2 cut(s)	412, 841
FaeI	CATG	3 cut(s)	292, 922, 985
FaqI	GGGAC	4 cut(s)	212, 467, 627, 1059
FatI	CATG	3 cut(s)	288, 918, 981
FauI	CCCGC	2 cut(s)	87, 375
FauNDI	CATATG	1 cut(s)	970
FbaI	TGATCA	1 cut(s)	214
FblI	GTMKAC	1 cut(s)	823
FokI	GGATG	1 cut(s)	704
FspBI	CTAG	2 cut(s)	45, 327
GlaI	GCGC	2 cut(s)	320, 486
GsaI	CCCAGC	1 cut(s)	355
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	7 cut(s)	278, 338, 350, 365, 467, 548, 904
HapII	CCGG	2 cut(s)	357, 498
HgaI	GACGC	2 cut(s)	112, 416
HhaI	GCGC	2 cut(s)	321, 487
Hin1II	CATG	3 cut(s)	292, 922, 985
Hin6I	GCGC	2 cut(s)	319, 485
HinP1I	GCGC	2 cut(s)	319, 485
HindIII	AAGCTT	2 cut(s)	145, 744
HinfI	GANTC	3 cut(s)	473, 820, 965
HpaII	CCGG	2 cut(s)	357, 498
HphI	GGTGA	1 cut(s)	902
Hpy166II	GTNNAC	4 cut(s)	50, 76, 495, 824
Hpy188I	TCNGA	2 cut(s)	664, 1003
Hpy188III	TCNNGA	2 cut(s)	422, 581
Hpy8I	GTNNAC	4 cut(s)	50, 76, 495, 824
Hpy99I	CGWCG	4 cut(s)	287, 520, 554, 1012
HpyAV	CCTTC	2 cut(s)	355, 694
HpyCH4III	ACNGT	2 cut(s)	563, 1026
HpyCH4IV	ACGT	2 cut(s)	72, 1007
HpyF10VI	GCNNNNNNNGC	5 cut(s)	88, 185, 301, 344, 787
HpyF3I	CTNAG	2 cut(s)	264, 1071
HpySE526I	ACGT	2 cut(s)	72, 1007
Hsp92II	CATG	3 cut(s)	292, 922, 985
HspAI	GCGC	2 cut(s)	319, 485
KflI	GGGWCCC	1 cut(s)	1046
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	3 cut(s)	214, 459, 684
LguI	GCTCTTC	1 cut(s)	411
LmnI	GCTCC	1 cut(s)	883
Lsp1109I	GCAGC	7 cut(s)	200, 247, 316, 628, 793, 837, 1116
MaeI	CTAG	2 cut(s)	45, 327
MaeII	ACGT	2 cut(s)	72, 1007
MalI	GATC	3 cut(s)	216, 461, 686
MboI	GATC	3 cut(s)	214, 459, 684
MboII	GAAGA	8 cut(s)	237, 240, 243, 398, 439, 468, 513, 615
MhlI	GDGCHC	1 cut(s)	406
MlyI	GAGTC	2 cut(s)	829, 974
MmeI	TCCRAC	3 cut(s)	156, 966, 999
MseI	TTAA	3 cut(s)	149, 996, 1118
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	2 cut(s)	357, 498
MspR9I	CCNGG	4 cut(s)	357, 358, 414, 843
Mva1269I	GAATGC	1 cut(s)	271
MvaI	CCWGG	2 cut(s)	414, 843
MvnI	CGCG	1 cut(s)	485
MwoI	GCNNNNNNNGC	5 cut(s)	88, 185, 301, 344, 787
NciI	CCSGG	2 cut(s)	357, 358
NdeI	CATATG	1 cut(s)	970
NdeII	GATC	3 cut(s)	214, 459, 684
NlaIII	CATG	3 cut(s)	292, 922, 985
NlaIV	GGNNCC	3 cut(s)	366, 1047, 1048
NspI	RCATGY	2 cut(s)	292, 985
PaeR7I	CTCGAG	1 cut(s)	422
PceI	AGGCCT	1 cut(s)	904
PciI	ACATGT	2 cut(s)	288, 981
PciSI	GCTCTTC	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	4 cut(s)	389, 521, 530, 549
PctI	GAATGC	1 cut(s)	271
PfeI	GAWTC	1 cut(s)	473
PinAI	ACCGGT	1 cut(s)	497
PleI	GAGTC	2 cut(s)	828, 973
PpsI	GAGTC	2 cut(s)	828, 973
PpuMI	RGGWCCY	2 cut(s)	1046, 1095
PscI	ACATGT	2 cut(s)	288, 981
PshBI	ATTAAT	1 cut(s)	1118
Psp5II	RGGWCCY	2 cut(s)	1046, 1095
Psp6I	CCWGG	2 cut(s)	412, 841
PspFI	CCCAGC	1 cut(s)	351
PspGI	CCWGG	2 cut(s)	412, 841
PspN4I	GGNNCC	3 cut(s)	366, 1047, 1048
PspPI	GGNCC	4 cut(s)	349, 364, 1046, 1095
PspPPI	RGGWCCY	2 cut(s)	1046, 1095
PstI	CTGCAG	4 cut(s)	65, 306, 646, 1090
PvuII	CAGCTG	1 cut(s)	260
RsaI	GTAC	4 cut(s)	49, 67, 773, 975
RsaNI	GTAC	4 cut(s)	48, 66, 772, 974
SapI	GCTCTTC	1 cut(s)	411
SaqAI	TTAA	3 cut(s)	149, 996, 1118
Sau3AI	GATC	3 cut(s)	214, 459, 684
Sau96I	GGNCC	4 cut(s)	349, 364, 1046, 1095
SbfI	CCTGCAGG	1 cut(s)	1090
SchI	GAGTC	2 cut(s)	829, 974
ScrFI	CCNGG	4 cut(s)	357, 358, 414, 843
SdaI	CCTGCAGG	1 cut(s)	1090
SduI	GDGCHC	1 cut(s)	406
SfcI	CTRYAG	4 cut(s)	61, 302, 642, 1086
Sfr274I	CTCGAG	1 cut(s)	422
SinI	GGWCC	2 cut(s)	1046, 1095
SlaI	CTCGAG	1 cut(s)	422
SmaI	CCCGGG	1 cut(s)	358
SmlI	CTYRAG	2 cut(s)	422, 776
SmoI	CTYRAG	2 cut(s)	422, 776
SpeI	ACTAGT	1 cut(s)	44
Sse8387I	CCTGCAGG	1 cut(s)	1090
SseBI	AGGCCT	1 cut(s)	904
SsiI	CCGC	8 cut(s)	80, 89, 269, 279, 347, 368, 480, 483
SspMI	CTAG	2 cut(s)	45, 327
StuI	AGGCCT	1 cut(s)	904
StyD4I	CCNGG	4 cut(s)	355, 356, 412, 841
TaaI	ACNGT	2 cut(s)	563, 1026
TaiI	ACGT	2 cut(s)	75, 1010
TaqI	TCGA	1 cut(s)	423
TatI	WGTACW	2 cut(s)	47, 65
TauI	GCSGC	4 cut(s)	271, 281, 350, 485
TfiI	GAWTC	1 cut(s)	473
Tru1I	TTAA	3 cut(s)	149, 996, 1118
Tru9I	TTAA	3 cut(s)	149, 996, 1118
TscAI	CASTG	1 cut(s)	961
TseI	GCWGC	7 cut(s)	188, 260, 304, 641, 781, 850, 1104
TspDTI	ATGAA	3 cut(s)	641, 713, 774
TspGWI	ACGGA	5 cut(s)	331, 385, 420, 631, 752
TspMI	CCCGGG	1 cut(s)	356
TspRI	CASTG	1 cut(s)	961
VpaK11BI	GGWCC	2 cut(s)	1046, 1095
VspI	ATTAAT	1 cut(s)	1118
XapI	RAATTY	3 cut(s)	182, 724, 925
XceI	RCATGY	2 cut(s)	292, 985
XhoI	CTCGAG	1 cut(s)	422
XmaI	CCCGGG	1 cut(s)	356
XmiI	GTMKAC	1 cut(s)	823
XspI	CTAG	2 cut(s)	45, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.