Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004975

Physical Location & Seq

Genomic Coordinates Reverse (-)

16979559 .. 16982506

Gene Structure 2948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG189200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGGAATGGGGGATACATACGACTACAATTACCAAAGCAACCCCTGTTCATCTTCAGCTCCTGCTTCTTCGGTCTCAGTTGCTCAGCCTCATTCGTCCACGGACGAAATCTCACTTTTTCTGCAACAGATTTTGGTGCGTTCTTCGTCTTTGAGCGGACAGCCGTTCTTGTTTTCGTCTTCGCCGGCTGGTTATGCTCTGCCGGAAAATCTCGGCCGTCCTTGCAACGATAGTTTCGTAGGGGGCGGGATCAGGGGCGTTGATGTCTCTACGGCGGTTGGGACGGGGAGTGGTCCGAATGTGTCTTCGTCGTCGGTCGGAGCGAGTGAGAATGAGGCCGACGAGTATGATTGTGAAAGTGAGGAGGGCCTTGAAGCGTTGGTAGAAGAGGCGGCAATGAAATCAGGTGGTCGTTGTTCTTCAAAGAGAAGCAGAGCTGCAGAAGTTCATAATTTGTCTGAAAAGAGGAGGAGGAGTAGGATTAATGAGAAAATGAAGGCATTGCAGAATCTCATCCCAAATTCTAATAAGACGGACAAGGCTTCAATGCTTGATGAAGCCATTGAATACCTCAAGCAGCTCCAGCTTCAAGTACAGATGTTATCAATGAGAAATGGCATGAGCTTGCATCCCATGTGCCTACCTGGAGCATCACAACTCTCTCAGATAAGAATGGACTTTGGTGAGGAAAATAGGCCTTTGCACTTGAACATGTCAGGCACACTGAATATGAACCAGGAACCCTCGACACAAAATTTGTACAATCCAAACCAGTCTTATGTACCAGATATGTCCAACGTAGTAAATTCAGAAGACGCATTTGGGTTGGAATCATCTATTCAGGCTCACTTGGGACCCTTTCAGCTCCCAAACTCATCTAAGGTTAGATATCTGCCCTTCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009639 GO:0009791 GO:0009889 GO:0009900 GO:0009908 GO:0010029 GO:0010047 GO:0010114 GO:0010154 GO:0010187 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048511 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048609 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1900140 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

301

Amino Acids

32.63

Weight (kDa)

5.12

Isoelectric Point (pI)

66.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	148 - 195	4.1e-14	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	154 - 199	1.7e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36930
fragaria_vesca	FvH4_1g16230 FvH4_1g16230 FvH4_1g16230 FvH4_1g16230
malus_domestica	MD02G1174600.v1.1 MD15G1285600.v1.1
prunus_persica	Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1
pyrus_communis	pycom02g14090 pycom15g24860
rosa_chinensis	RchiOBHm_Chr2g0105931
rosa_laevigata	RLG00000017471
rosa_multiflora	Rmu_sc0004367.1_g000014
rosa_roxburghii	Rroxscaffold_2G00137560 Rroxscaffold_2G00137710
rosa_rugosa	Rorug02G0132100 Rorug02G0132200 Rorug02G0132300
rosa_samantha	Rh2AG182600 Rh2BG192600 Rh2CG187200 Rh2DG189200
rosa_wichuraiana	Rw2G014330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	156
AciI	CCGC	4 cut(s)	156, 246, 275, 392
AclWI	GGATC	1 cut(s)	257
AcoI	YGGCCR	1 cut(s)	214
AcsI	RAATTY	3 cut(s)	520, 754, 805
AcuI	CTGAAG	1 cut(s)	39
AfaI	GTAC	3 cut(s)	594, 761, 783
AflIII	ACRYGT	1 cut(s)	711
AgsI	TTSAA	7 cut(s)	374, 423, 546, 566, 590, 709, 901
AjnI	CCWGG	2 cut(s)	643, 735
AjuI	GAANNNNNNNTTGG	2 cut(s)	804, 836
AluBI	AGCT	6 cut(s)	59, 437, 580, 586, 624, 865
AluI	AGCT	6 cut(s)	59, 437, 580, 586, 624, 865
Alw26I	GTCTC	2 cut(s)	79, 271
AlwI	GGATC	1 cut(s)	257
AlwNI	CAGNNNCTG	1 cut(s)	62
AoxI	GGCC	4 cut(s)	214, 336, 367, 695
ApeKI	GCWGC	2 cut(s)	437, 577
ApoI	RAATTY	3 cut(s)	520, 754, 805
ArsI	GACNNNNNNTTYG	2 cut(s)	739, 771
AseI	ATTAAT	1 cut(s)	483
AspS9I	GGNCC	3 cut(s)	293, 367, 854
AsuHPI	GGTGA	1 cut(s)	695
AvaII	GGWCC	2 cut(s)	293, 854
BbsI	GAAGAC	3 cut(s)	171, 297, 819
BbvI	GCAGC	2 cut(s)	424, 589
BceAI	ACGGC	3 cut(s)	148, 201, 288
BciT130I	CCWGG	2 cut(s)	645, 737
BciVI	GTATCC	1 cut(s)	7
BcoDI	GTCTC	2 cut(s)	79, 271
BfmI	CTRYAG	1 cut(s)	438
BfuI	GTATCC	1 cut(s)	7
BisI	GCNGC	3 cut(s)	393, 438, 578
BlpI	GCTNAGC	1 cut(s)	84
BlsI	GCNGC	3 cut(s)	394, 439, 579
Bme1390I	CCNGG	2 cut(s)	645, 737
Bme18I	GGWCC	2 cut(s)	293, 854
BmgT120I	GGNCC	3 cut(s)	293, 367, 854
BmiI	GGNNCC	3 cut(s)	741, 855, 856
BmrFI	CCNGG	2 cut(s)	645, 737
BmsI	GCATC	2 cut(s)	637, 659
BpiI	GAAGAC	3 cut(s)	171, 297, 819
BpmI	CTGGAG	2 cut(s)	566, 666
Bpu1102I	GCTNAGC	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	557
BsaI	GGTCTC	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	99
BsaXI	ACNNNNNCTCC	2 cut(s)	460, 490
Bse118I	RCCGGY	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	772
Bse3DI	GCAATG	2 cut(s)	402, 500
BseBI	CCWGG	2 cut(s)	645, 737
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	2 cut(s)	513, 628
BseMI	GCAATG	2 cut(s)	402, 500
BseMII	CTCAG	3 cut(s)	90, 98, 677
BseNI	ACTGG	1 cut(s)	772
BseRI	GAGGAG	4 cut(s)	377, 481, 484, 487
BseX3I	CGGCCG	1 cut(s)	214
BseXI	GCAGC	2 cut(s)	424, 589
Bsh1285I	CGRYCG	2 cut(s)	217, 318
BshFI	GGCC	4 cut(s)	216, 338, 369, 697
BsiEI	CGRYCG	2 cut(s)	217, 318
BsiSI	CCGG	2 cut(s)	185, 203
BslFI	GGGAC	2 cut(s)	295, 867
BsmAI	GTCTC	2 cut(s)	79, 271
BsmFI	GGGAC	2 cut(s)	295, 867
BsnI	GGCC	4 cut(s)	216, 338, 369, 697
Bso31I	GGTCTC	1 cut(s)	79
Bsp1407I	TGTACA	1 cut(s)	759
Bsp143I	GATC	1 cut(s)	249
Bsp1720I	GCTNAGC	1 cut(s)	84
BspACI	CCGC	4 cut(s)	156, 246, 275, 392
BspANI	GGCC	4 cut(s)	216, 338, 369, 697
BspCNI	CTCAG	3 cut(s)	89, 97, 676
BspLI	GGNNCC	3 cut(s)	741, 855, 856
BspMAI	CTGCAG	1 cut(s)	442
BspPI	GGATC	1 cut(s)	257
BspTNI	GGTCTC	1 cut(s)	79
BsrBI	CCGCTC	1 cut(s)	156
BsrDI	GCAATG	2 cut(s)	402, 500
BsrFI	RCCGGY	1 cut(s)	184
BsrGI	TGTACA	1 cut(s)	759
BsrI	ACTGG	1 cut(s)	772
BssAI	RCCGGY	1 cut(s)	184
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	1 cut(s)	249
Bst2UI	CCWGG	2 cut(s)	645, 737
Bst6I	CTCTTC	1 cut(s)	381
BstAUI	TGTACA	1 cut(s)	759
BstC8I	GCNNGC	2 cut(s)	186, 626
BstDEI	CTNAG	4 cut(s)	76, 84, 663, 879
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	2 cut(s)	513, 628
BstKTI	GATC	1 cut(s)	252
BstMAI	GTCTC	2 cut(s)	79, 271
BstMBI	GATC	1 cut(s)	249
BstMCI	CGRYCG	2 cut(s)	217, 318
BstMWI	GCNNNNNNNGC	3 cut(s)	194, 222, 583
BstNI	CCWGG	2 cut(s)	645, 737
BstNSI	RCATGY	1 cut(s)	715
BstSCI	CCNGG	2 cut(s)	643, 735
BstSFI	CTRYAG	1 cut(s)	438
BstV1I	GCAGC	2 cut(s)	424, 589
BstV2I	GAAGAC	3 cut(s)	171, 297, 819
BstZI	CGGCCG	1 cut(s)	214
BsuI	GTATCC	1 cut(s)	7
BsuRI	GGCC	4 cut(s)	216, 338, 369, 697
BtgI	CCRYGG	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	513, 628
BtsIMutI	CAGTG	1 cut(s)	722
Cac8I	GCNNGC	2 cut(s)	186, 626
CaiI	CAGNNNCTG	1 cut(s)	62
Cfr10I	RCCGGY	1 cut(s)	184
Cfr13I	GGNCC	3 cut(s)	293, 367, 854
CseI	GACGC	1 cut(s)	824
Csp6I	GTAC	3 cut(s)	593, 760, 782
CviAII	CATG	3 cut(s)	619, 634, 712
CviQI	GTAC	3 cut(s)	593, 760, 782
DdeI	CTNAG	4 cut(s)	76, 84, 663, 879
DpnI	GATC	1 cut(s)	251
DpnII	GATC	1 cut(s)	249
EaeI	YGGCCR	1 cut(s)	214
EagI	CGGCCG	1 cut(s)	214
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
EclXI	CGGCCG	1 cut(s)	214
Eco147I	AGGCCT	1 cut(s)	697
Eco31I	GGTCTC	1 cut(s)	79
Eco32I	GATATC	1 cut(s)	890
Eco47I	GGWCC	2 cut(s)	293, 854
Eco52I	CGGCCG	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	39
EcoO109I	RGGNCCY	2 cut(s)	367, 854
EcoRII	CCWGG	2 cut(s)	643, 735
EcoRV	GATATC	1 cut(s)	890
FaeI	CATG	3 cut(s)	622, 637, 715
FaqI	GGGAC	2 cut(s)	295, 867
FatI	CATG	3 cut(s)	618, 633, 711
FauI	CCCGC	1 cut(s)	239
Fnu4HI	GCNGC	3 cut(s)	393, 438, 578
FokI	GGATG	2 cut(s)	500, 615
Fsp4HI	GCNGC	3 cut(s)	393, 438, 578
GluI	GCNGC	3 cut(s)	393, 438, 578
GsuI	CTGGAG	2 cut(s)	566, 666
HaeIII	GGCC	4 cut(s)	216, 338, 369, 697
HapII	CCGG	2 cut(s)	185, 203
HgaI	GACGC	1 cut(s)	824
Hin1II	CATG	3 cut(s)	622, 637, 715
HinfI	GANTC	2 cut(s)	508, 830
HpaII	CCGG	2 cut(s)	185, 203
HphI	GGTGA	1 cut(s)	695
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	5 cut(s)	297, 320, 460, 666, 811
Hpy8I	GTNNAC	1 cut(s)	99
Hpy99I	CGWCG	3 cut(s)	313, 316, 344
HpyAV	CCTTC	1 cut(s)	490
HpyCH4IV	ACGT	1 cut(s)	798
HpyCH4V	TGCA	6 cut(s)	124, 225, 440, 505, 628, 703
HpyF10VI	GCNNNNNNNGC	3 cut(s)	194, 222, 583
HpyF3I	CTNAG	4 cut(s)	76, 84, 663, 879
HpySE526I	ACGT	1 cut(s)	798
Hsp92II	CATG	3 cut(s)	622, 637, 715
KflI	GGGWCCC	1 cut(s)	854
KroI	GCCGGC	1 cut(s)	184
KroNI	GCCGGC	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	249
LmnI	GCTCC	5 cut(s)	64, 320, 585, 647, 870
Lsp1109I	GCAGC	2 cut(s)	424, 589
LweI	GCATC	2 cut(s)	637, 659
MaeII	ACGT	1 cut(s)	798
MalI	GATC	1 cut(s)	251
MbiI	CCGCTC	1 cut(s)	156
MboI	GATC	1 cut(s)	249
MboII	GAAGA	8 cut(s)	45, 60, 135, 171, 297, 398, 411, 824
MluCI	AATT	5 cut(s)	28, 451, 520, 754, 805
MmeI	TCCRAC	3 cut(s)	298, 807, 819
MroNI	GCCGGC	1 cut(s)	184
MseI	TTAA	1 cut(s)	483
MspI	CCGG	2 cut(s)	185, 203
MspR9I	CCNGG	2 cut(s)	645, 737
MvaI	CCWGG	2 cut(s)	645, 737
MwoI	GCNNNNNNNGC	3 cut(s)	194, 222, 583
NaeI	GCCGGC	1 cut(s)	186
NdeII	GATC	1 cut(s)	249
NgoMIV	GCCGGC	1 cut(s)	184
NlaIII	CATG	3 cut(s)	622, 637, 715
NlaIV	GGNNCC	3 cut(s)	741, 855, 856
NmeAIII	GCCGAG	1 cut(s)	192
NspI	RCATGY	1 cut(s)	715
PceI	AGGCCT	1 cut(s)	697
PciI	ACATGT	1 cut(s)	711
PcsI	WCGNNNNNNNCGW	2 cut(s)	234, 320
PdiI	GCCGGC	1 cut(s)	186
PfeI	GAWTC	2 cut(s)	508, 830
PkrI	GCNGC	3 cut(s)	394, 439, 579
PpuMI	RGGWCCY	1 cut(s)	854
PscI	ACATGT	1 cut(s)	711
PshBI	ATTAAT	1 cut(s)	483
Psp5II	RGGWCCY	1 cut(s)	854
Psp6I	CCWGG	2 cut(s)	643, 735
PspGI	CCWGG	2 cut(s)	643, 735
PspN4I	GGNNCC	3 cut(s)	741, 855, 856
PspPI	GGNCC	3 cut(s)	293, 367, 854
PspPPI	RGGWCCY	1 cut(s)	854
PstI	CTGCAG	1 cut(s)	442
PstNI	CAGNNNCTG	1 cut(s)	62
RsaI	GTAC	3 cut(s)	594, 761, 783
RsaNI	GTAC	3 cut(s)	593, 760, 782
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	3 cut(s)	393, 438, 578
Sau3AI	GATC	1 cut(s)	249
Sau96I	GGNCC	3 cut(s)	293, 367, 854
ScrFI	CCNGG	2 cut(s)	645, 737
SfaNI	GCATC	2 cut(s)	637, 659
SfcI	CTRYAG	1 cut(s)	438
SinI	GGWCC	2 cut(s)	293, 854
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
Sse9I	AATT	5 cut(s)	28, 451, 520, 754, 805
SseBI	AGGCCT	1 cut(s)	697
SsiI	CCGC	4 cut(s)	156, 246, 275, 392
StuI	AGGCCT	1 cut(s)	697
StyD4I	CCNGG	2 cut(s)	643, 735
TaiI	ACGT	1 cut(s)	801
TaqI	TCGA	1 cut(s)	746
TaqII	GACCGA	2 cut(s)	61, 304
TasI	AATT	5 cut(s)	28, 451, 520, 754, 805
TatI	WGTACW	2 cut(s)	592, 759
TauI	GCSGC	1 cut(s)	395
TfiI	GAWTC	2 cut(s)	508, 830
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	1 cut(s)	729
TseI	GCWGC	2 cut(s)	437, 577
TspDTI	ATGAA	6 cut(s)	39, 413, 437, 509, 570, 746
TspGWI	ACGGA	2 cut(s)	116, 548
TspRI	CASTG	1 cut(s)	729
VpaK11BI	GGWCC	2 cut(s)	293, 854
VspI	ATTAAT	1 cut(s)	483
XapI	RAATTY	3 cut(s)	520, 754, 805
XceI	RCATGY	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.