transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G36930 |
| fragaria_vesca | FvH4_1g16230 FvH4_1g16230 FvH4_1g16230 FvH4_1g16230 |
| malus_domestica | MD02G1174600.v1.1 MD15G1285600.v1.1 |
| prunus_persica | Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 |
| pyrus_communis | pycom02g14090 pycom15g24860 |
| rosa_chinensis | RchiOBHm_Chr2g0105931 |
| rosa_laevigata | RLG00000017471 |
| rosa_multiflora | Rmu_sc0004367.1_g000014 |
| rosa_roxburghii | Rroxscaffold_2G00137560 Rroxscaffold_2G00137710 |
| rosa_rugosa | Rorug02G0132100 Rorug02G0132200 Rorug02G0132300 |
| rosa_samantha | Rh2AG182600 Rh2BG192600 Rh2CG187200 Rh2DG189200 |
| rosa_wichuraiana | Rw2G014330 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 296 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 632 |
| AccI | GTMKAC | 1 cut(s) | 1324 |
| AccII | CGCG | 1 cut(s) | 497 |
| AciI | CCGC | 7 cut(s) | 383, 492, 495, 509, 614, 1096, 1227 |
| AclWI | GGATC | 1 cut(s) | 479 |
| AcoI | YGGCCR | 1 cut(s) | 477 |
| AcsI | RAATTY | 5 cut(s) | 303, 745, 988, 1208, 1348 |
| AcuI | CTGAAG | 1 cut(s) | 791 |
| AcyI | GRCGYC | 1 cut(s) | 293 |
| AfaI | GTAC | 2 cut(s) | 794, 1038 |
| AfeI | AGCGCT | 1 cut(s) | 876 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 632, 1077 |
| AflIII | ACRYGT | 2 cut(s) | 1044, 1155 |
| AgsI | TTSAA | 5 cut(s) | 596, 648, 771, 1118, 1214 |
| AjnI | CCWGG | 3 cut(s) | 625, 868, 969 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1059, 1091 |
| AluBI | AGCT | 4 cut(s) | 260, 662, 805, 811 |
| AluI | AGCT | 4 cut(s) | 260, 662, 805, 811 |
| Alw26I | GTCTC | 4 cut(s) | 408, 551, 898, 1187 |
| AlwI | GGATC | 1 cut(s) | 479 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 263 |
| Aor51HI | AGCGCT | 1 cut(s) | 876 |
| AoxI | GGCC | 5 cut(s) | 351, 363, 378, 477, 929 |
| ApoI | RAATTY | 5 cut(s) | 303, 745, 988, 1208, 1348 |
| AseI | ATTAAT | 2 cut(s) | 708, 1176 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 643 |
| AspA2I | CCTAGG | 1 cut(s) | 460 |
| AspLEI | GCGC | 2 cut(s) | 499, 877 |
| AspS9I | GGNCC | 4 cut(s) | 364, 379, 910, 1109 |
| AsuHPI | GGTGA | 2 cut(s) | 228, 929 |
| AvaII | GGWCC | 2 cut(s) | 910, 1109 |
| AvrII | CCTAGG | 1 cut(s) | 460 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1242, 1275 |
| BanII | GRGCYC | 1 cut(s) | 1102 |
| BbsI | GAAGAC | 1 cut(s) | 519 |
| BccI | CCATC | 1 cut(s) | 181 |
| BceAI | ACGGC | 3 cut(s) | 423, 464, 492 |
| BciT130I | CCWGG | 3 cut(s) | 627, 870, 971 |
| BciVI | GTATCC | 1 cut(s) | 187 |
| BclI | TGATCA | 2 cut(s) | 202, 427 |
| BcoDI | GTCTC | 4 cut(s) | 408, 551, 898, 1187 |
| BfaI | CTAG | 3 cut(s) | 342, 461, 1230 |
| BfmI | CTRYAG | 3 cut(s) | 317, 663, 1144 |
| BfoI | RGCGCY | 1 cut(s) | 878 |
| BfuI | GTATCC | 1 cut(s) | 187 |
| BlnI | CCTAGG | 1 cut(s) | 460 |
| Bme1390I | CCNGG | 3 cut(s) | 627, 870, 971 |
| Bme18I | GGWCC | 2 cut(s) | 910, 1109 |
| BmgT120I | GGNCC | 4 cut(s) | 364, 379, 910, 1109 |
| BmiI | GGNNCC | 3 cut(s) | 381, 1110, 1111 |
| BmrFI | CCNGG | 3 cut(s) | 627, 870, 971 |
| BmsI | GCATC | 3 cut(s) | 862, 1009, 1174 |
| BpiI | GAAGAC | 1 cut(s) | 519 |
| BpmI | CTGGAG | 2 cut(s) | 240, 891 |
| BpuEI | CTTGAG | 1 cut(s) | 782 |
| BsaHI | GRCGYC | 1 cut(s) | 293 |
| BsaJI | CCNNGG | 5 cut(s) | 354, 460, 626, 913, 1134 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 685, 715, 1142, 1172 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 632, 1077 |
| Bse118I | RCCGGY | 2 cut(s) | 505, 1311 |
| Bse1I | ACTGG | 1 cut(s) | 1027 |
| Bse3DI | GCAATG | 1 cut(s) | 725 |
| BseBI | CCWGG | 3 cut(s) | 627, 870, 971 |
| BseDI | CCNNGG | 5 cut(s) | 354, 460, 626, 913, 1134 |
| BseGI | GGATG | 2 cut(s) | 853, 1130 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 632, 1077 |
| BseMI | GCAATG | 1 cut(s) | 725 |
| BseMII | CTCAG | 2 cut(s) | 293, 448 |
| BseNI | ACTGG | 1 cut(s) | 1027 |
| BseRI | GAGGAG | 5 cut(s) | 178, 599, 706, 709, 712 |
| BseX3I | CGGCCG | 1 cut(s) | 477 |
| BsgI | GTGCAG | 1 cut(s) | 839 |
| Bsh1236I | CGCG | 1 cut(s) | 497 |
| Bsh1285I | CGRYCG | 2 cut(s) | 480, 1227 |
| BshFI | GGCC | 5 cut(s) | 353, 365, 380, 479, 931 |
| BsiEI | CGRYCG | 2 cut(s) | 480, 1227 |
| BsiSI | CCGG | 2 cut(s) | 506, 1312 |
| BslFI | GGGAC | 2 cut(s) | 479, 1122 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 632, 1077 |
| BsmAI | GTCTC | 4 cut(s) | 408, 551, 898, 1187 |
| BsmBI | CGTCTC | 3 cut(s) | 408, 551, 1187 |
| BsmFI | GGGAC | 2 cut(s) | 479, 1122 |
| BsnI | GGCC | 5 cut(s) | 353, 365, 380, 479, 931 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1102 |
| Bsp143I | GATC | 4 cut(s) | 202, 427, 471, 1264 |
| BspACI | CCGC | 7 cut(s) | 383, 492, 495, 509, 614, 1096, 1227 |
| BspANI | GGCC | 5 cut(s) | 353, 365, 380, 479, 931 |
| BspCNI | CTCAG | 2 cut(s) | 292, 447 |
| BspFNI | CGCG | 1 cut(s) | 497 |
| BspLI | GGNNCC | 3 cut(s) | 381, 1110, 1111 |
| BspMAI | CTGCAG | 2 cut(s) | 321, 667 |
| BspPI | GGATC | 1 cut(s) | 479 |
| BsrDI | GCAATG | 1 cut(s) | 725 |
| BsrFI | RCCGGY | 2 cut(s) | 505, 1311 |
| BsrI | ACTGG | 1 cut(s) | 1027 |
| BssAI | RCCGGY | 2 cut(s) | 505, 1311 |
| BssECI | CCNNGG | 5 cut(s) | 354, 460, 626, 913, 1134 |
| BssMI | GATC | 4 cut(s) | 202, 427, 471, 1264 |
| BssNI | GRCGYC | 1 cut(s) | 293 |
| BssT1I | CCWWGG | 2 cut(s) | 460, 913 |
| Bst2UI | CCWGG | 3 cut(s) | 627, 870, 971 |
| Bst6I | CTCTTC | 2 cut(s) | 538, 603 |
| BstACI | GRCGYC | 1 cut(s) | 293 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 328 |
| BstC8I | GCNNGC | 2 cut(s) | 507, 1098 |
| BstDEI | CTNAG | 2 cut(s) | 279, 434 |
| BstF5I | GGATG | 2 cut(s) | 853, 1130 |
| BstFNI | CGCG | 1 cut(s) | 497 |
| BstH2I | RGCGCY | 1 cut(s) | 878 |
| BstHHI | GCGC | 2 cut(s) | 499, 877 |
| BstKTI | GATC | 4 cut(s) | 205, 430, 474, 1267 |
| BstMAI | GTCTC | 4 cut(s) | 408, 551, 898, 1187 |
| BstMBI | GATC | 4 cut(s) | 202, 427, 471, 1264 |
| BstMCI | CGRYCG | 2 cut(s) | 480, 1227 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 18, 266, 269, 328, 444, 808, 817 |
| BstNI | CCWGG | 3 cut(s) | 627, 870, 971 |
| BstNSI | RCATGY | 3 cut(s) | 1048, 1159, 1296 |
| BstSCI | CCNGG | 3 cut(s) | 625, 868, 969 |
| BstSFI | CTRYAG | 3 cut(s) | 317, 663, 1144 |
| BstUI | CGCG | 1 cut(s) | 497 |
| BstV2I | GAAGAC | 1 cut(s) | 519 |
| BstZI | CGGCCG | 1 cut(s) | 477 |
| BsuI | GTATCC | 1 cut(s) | 187 |
| BsuRI | GGCC | 5 cut(s) | 353, 365, 380, 479, 931 |
| BtsCI | GGATG | 2 cut(s) | 853, 1130 |
| BtsI | GCAGTG | 1 cut(s) | 956 |
| BtsIMutI | CAGTG | 1 cut(s) | 956 |
| Cac8I | GCNNGC | 2 cut(s) | 507, 1098 |
| CaiI | CAGNNNCTG | 1 cut(s) | 263 |
| CfoI | GCGC | 2 cut(s) | 499, 877 |
| Cfr10I | RCCGGY | 2 cut(s) | 505, 1311 |
| Cfr13I | GGNCC | 4 cut(s) | 364, 379, 910, 1109 |
| CseI | GACGC | 2 cut(s) | 42, 234 |
| Csp6I | GTAC | 2 cut(s) | 793, 1037 |
| CviAII | CATG | 6 cut(s) | 454, 844, 946, 1045, 1156, 1293 |
| CviQI | GTAC | 2 cut(s) | 793, 1037 |
| DdeI | CTNAG | 2 cut(s) | 279, 434 |
| DpnI | GATC | 4 cut(s) | 204, 429, 473, 1266 |
| DpnII | GATC | 4 cut(s) | 202, 427, 471, 1264 |
| DraI | TTTAAA | 1 cut(s) | 1332 |
| EaeI | YGGCCR | 1 cut(s) | 477 |
| EagI | CGGCCG | 1 cut(s) | 477 |
| Eam1104I | CTCTTC | 2 cut(s) | 538, 603 |
| EarI | CTCTTC | 2 cut(s) | 538, 603 |
| EciI | GGCGGA | 1 cut(s) | 481 |
| EclXI | CGGCCG | 1 cut(s) | 477 |
| Eco130I | CCWWGG | 2 cut(s) | 460, 913 |
| Eco147I | AGGCCT | 1 cut(s) | 931 |
| Eco24I | GRGCYC | 1 cut(s) | 1102 |
| Eco47I | GGWCC | 2 cut(s) | 910, 1109 |
| Eco47III | AGCGCT | 1 cut(s) | 876 |
| Eco52I | CGGCCG | 1 cut(s) | 477 |
| Eco57I | CTGAAG | 1 cut(s) | 791 |
| EcoO109I | RGGNCCY | 2 cut(s) | 379, 1109 |
| EcoRII | CCWGG | 3 cut(s) | 625, 868, 969 |
| EcoT14I | CCWWGG | 2 cut(s) | 460, 913 |
| EcoT38I | GRGCYC | 1 cut(s) | 1102 |
| ErhI | CCWWGG | 2 cut(s) | 460, 913 |
| Esp3I | CGTCTC | 3 cut(s) | 408, 551, 1187 |
| FaeI | CATG | 6 cut(s) | 457, 847, 949, 1048, 1159, 1296 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1311, 1343 |
| FaqI | GGGAC | 2 cut(s) | 479, 1122 |
| FatI | CATG | 6 cut(s) | 453, 843, 945, 1044, 1155, 1292 |
| FauI | CCCGC | 3 cut(s) | 390, 502, 1089 |
| FauNDI | CATATG | 1 cut(s) | 1033 |
| FbaI | TGATCA | 2 cut(s) | 202, 427 |
| FblI | GTMKAC | 1 cut(s) | 1324 |
| FokI | GGATG | 2 cut(s) | 840, 1117 |
| FriOI | GRGCYC | 1 cut(s) | 1102 |
| FspBI | CTAG | 3 cut(s) | 342, 461, 1230 |
| GlaI | GCGC | 2 cut(s) | 498, 876 |
| GsuI | CTGGAG | 2 cut(s) | 240, 891 |
| HaeII | RGCGCY | 1 cut(s) | 878 |
| HaeIII | GGCC | 5 cut(s) | 353, 365, 380, 479, 931 |
| HapII | CCGG | 2 cut(s) | 506, 1312 |
| HgaI | GACGC | 2 cut(s) | 42, 234 |
| HhaI | GCGC | 2 cut(s) | 499, 877 |
| Hin1I | GRCGYC | 1 cut(s) | 293 |
| Hin1II | CATG | 6 cut(s) | 457, 847, 949, 1048, 1159, 1296 |
| Hin6I | GCGC | 2 cut(s) | 497, 875 |
| HinP1I | GCGC | 2 cut(s) | 497, 875 |
| HinfI | GANTC | 6 cut(s) | 485, 514, 847, 974, 1085, 1198 |
| HpaII | CCGG | 2 cut(s) | 506, 1312 |
| HphI | GGTGA | 2 cut(s) | 228, 929 |
| Hpy166II | GTNNAC | 1 cut(s) | 1325 |
| Hpy188I | TCNGA | 8 cut(s) | 298, 542, 685, 1066, 1135, 1192, 1264, 1269 |
| Hpy188III | TCNNGA | 1 cut(s) | 593 |
| Hpy8I | GTNNAC | 1 cut(s) | 1325 |
| Hpy99I | CGWCG | 2 cut(s) | 295, 302 |
| HpyAV | CCTTC | 6 cut(s) | 249, 285, 297, 715, 1313, 1366 |
| HpyCH4IV | ACGT | 1 cut(s) | 293 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 18, 266, 269, 328, 444, 808, 817 |
| HpyF3I | CTNAG | 2 cut(s) | 279, 434 |
| HpySE526I | ACGT | 1 cut(s) | 293 |
| Hsp92I | GRCGYC | 1 cut(s) | 293 |
| Hsp92II | CATG | 6 cut(s) | 457, 847, 949, 1048, 1159, 1296 |
| HspAI | GCGC | 2 cut(s) | 497, 875 |
| KflI | GGGWCCC | 1 cut(s) | 1109 |
| KroI | GCCGGC | 1 cut(s) | 505 |
| KroNI | GCCGGC | 1 cut(s) | 507 |
| Ksp22I | TGATCA | 2 cut(s) | 202, 427 |
| Kzo9I | GATC | 4 cut(s) | 202, 427, 471, 1264 |
| LmnI | GCTCC | 7 cut(s) | 277, 336, 542, 816, 872, 1220, 1289 |
| LweI | GCATC | 3 cut(s) | 862, 1009, 1174 |
| MaeI | CTAG | 3 cut(s) | 342, 461, 1230 |
| MaeII | ACGT | 1 cut(s) | 293 |
| MalI | GATC | 4 cut(s) | 204, 429, 473, 1266 |
| MboI | GATC | 4 cut(s) | 202, 427, 471, 1264 |
| MhlI | GDGCHC | 1 cut(s) | 1102 |
| MluCI | AATT | 9 cut(s) | 56, 303, 745, 988, 1060, 1173, 1208, 1214, 1348 |
| MlyI | GAGTC | 1 cut(s) | 856 |
| MmeI | TCCRAC | 4 cut(s) | 321, 1004, 1029, 1062 |
| MroNI | GCCGGC | 1 cut(s) | 505 |
| MroXI | GAANNNNTTC | 1 cut(s) | 643 |
| MseI | TTAA | 6 cut(s) | 59, 708, 1059, 1176, 1248, 1331 |
| MspA1I | CMGCKG | 1 cut(s) | 260 |
| MspI | CCGG | 2 cut(s) | 506, 1312 |
| MspR9I | CCNGG | 3 cut(s) | 627, 870, 971 |
| MvaI | CCWGG | 3 cut(s) | 627, 870, 971 |
| MvnI | CGCG | 1 cut(s) | 497 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 18, 266, 269, 328, 444, 808, 817 |
| NaeI | GCCGGC | 1 cut(s) | 507 |
| NdeI | CATATG | 1 cut(s) | 1033 |
| NdeII | GATC | 4 cut(s) | 202, 427, 471, 1264 |
| NgoMIV | GCCGGC | 1 cut(s) | 505 |
| NlaIII | CATG | 6 cut(s) | 457, 847, 949, 1048, 1159, 1296 |
| NlaIV | GGNNCC | 3 cut(s) | 381, 1110, 1111 |
| NspI | RCATGY | 3 cut(s) | 1048, 1159, 1296 |
| PceI | AGGCCT | 1 cut(s) | 931 |
| PciI | ACATGT | 2 cut(s) | 1044, 1155 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 542 |
| PdiI | GCCGGC | 1 cut(s) | 507 |
| PdmI | GAANNNNTTC | 1 cut(s) | 643 |
| PfeI | GAWTC | 5 cut(s) | 485, 514, 974, 1085, 1198 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 632 |
| PleI | GAGTC | 1 cut(s) | 855 |
| PpsI | GAGTC | 1 cut(s) | 855 |
| PpuMI | RGGWCCY | 1 cut(s) | 1109 |
| PscI | ACATGT | 2 cut(s) | 1044, 1155 |
| PshBI | ATTAAT | 2 cut(s) | 708, 1176 |
| Psp5II | RGGWCCY | 1 cut(s) | 1109 |
| Psp6I | CCWGG | 3 cut(s) | 625, 868, 969 |
| PspGI | CCWGG | 3 cut(s) | 625, 868, 969 |
| PspN4I | GGNNCC | 3 cut(s) | 381, 1110, 1111 |
| PspPI | GGNCC | 4 cut(s) | 364, 379, 910, 1109 |
| PspPPI | RGGWCCY | 1 cut(s) | 1109 |
| PstI | CTGCAG | 2 cut(s) | 321, 667 |
| PstNI | CAGNNNCTG | 1 cut(s) | 263 |
| PvuII | CAGCTG | 1 cut(s) | 260 |
| RsaI | GTAC | 2 cut(s) | 794, 1038 |
| RsaNI | GTAC | 2 cut(s) | 793, 1037 |
| SaqAI | TTAA | 6 cut(s) | 59, 708, 1059, 1176, 1248, 1331 |
| Sau3AI | GATC | 4 cut(s) | 202, 427, 471, 1264 |
| Sau96I | GGNCC | 4 cut(s) | 364, 379, 910, 1109 |
| SchI | GAGTC | 1 cut(s) | 856 |
| ScrFI | CCNGG | 3 cut(s) | 627, 870, 971 |
| SduI | GDGCHC | 1 cut(s) | 1102 |
| SfaNI | GCATC | 3 cut(s) | 862, 1009, 1174 |
| SfcI | CTRYAG | 3 cut(s) | 317, 663, 1144 |
| SinI | GGWCC | 2 cut(s) | 910, 1109 |
| SmlI | CTYRAG | 1 cut(s) | 797 |
| SmoI | CTYRAG | 1 cut(s) | 797 |
| Sse9I | AATT | 9 cut(s) | 56, 303, 745, 988, 1060, 1173, 1208, 1214, 1348 |
| SseBI | AGGCCT | 1 cut(s) | 931 |
| SsiI | CCGC | 7 cut(s) | 383, 492, 495, 509, 614, 1096, 1227 |
| SspMI | CTAG | 3 cut(s) | 342, 461, 1230 |
| StuI | AGGCCT | 1 cut(s) | 931 |
| StyD4I | CCNGG | 3 cut(s) | 625, 868, 969 |
| StyI | CCWWGG | 2 cut(s) | 460, 913 |
| TaiI | ACGT | 1 cut(s) | 296 |
| TaqI | TCGA | 2 cut(s) | 290, 637 |
| TasI | AATT | 9 cut(s) | 56, 303, 745, 988, 1060, 1173, 1208, 1214, 1348 |
| TauI | GCSGC | 2 cut(s) | 497, 617 |
| TfiI | GAWTC | 5 cut(s) | 485, 514, 974, 1085, 1198 |
| Tru1I | TTAA | 6 cut(s) | 59, 708, 1059, 1176, 1248, 1331 |
| Tru9I | TTAA | 6 cut(s) | 59, 708, 1059, 1176, 1248, 1331 |
| TscAI | CASTG | 1 cut(s) | 963 |
| TspDTI | ATGAA | 6 cut(s) | 387, 734, 795, 980, 1343, 1355 |
| TspGWI | ACGGA | 6 cut(s) | 323, 396, 400, 432, 575, 773 |
| TspRI | CASTG | 1 cut(s) | 963 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 632 |
| VpaK11BI | GGWCC | 2 cut(s) | 910, 1109 |
| VspI | ATTAAT | 2 cut(s) | 708, 1176 |
| XapI | RAATTY | 5 cut(s) | 303, 745, 988, 1208, 1348 |
| XceI | RCATGY | 3 cut(s) | 1048, 1159, 1296 |
| XmaJI | CCTAGG | 1 cut(s) | 460 |
| XmiI | GTMKAC | 1 cut(s) | 1324 |
| XmnI | GAANNNNTTC | 1 cut(s) | 643 |
| XspI | CTAG | 3 cut(s) | 342, 461, 1230 |
| ZraI | GACGTC | 1 cut(s) | 294 |