Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0004975

Physical Location & Seq

Genomic Coordinates Reverse (-)

10673912 .. 10676125

Gene Structure 2214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g14090.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGGGGACACTTACGAATGCGATCGTTATTACAAAAACGCCACTTGTTCTTCTTCTCCTCCAGCTGCTCCGCCGCATTCGGCCGCCGACGACATGTCGCTTTTTCTGCAGCAGATTTTGGTGCGCTCGTCTAGTTCTTTGGCTTCCGGGAAGGCCCCGCAGTCTTTATTTTCGTCCTCGCCGTCCGTTGGTGCTCTTCTGCCAGGTAATCTCGACCGTCCGTGCCACTCTGGTTTCTTAGGCGACGGGATCCCGGCCGTTGATTCTTTTGCCGCGTTTGTGTCCGGTCATCCCAACGGGGCGAGTGAGAACGAGGCCGACGAGTATGACTGTGAAAACGAGGAGGGTCTTGAAGCGTTTGTGGAAGCAAGGCGAGGTGGCGGTCGGAGTTCTTCAAAGAGAAGCAGAGCTGCAGAAGTTCATAATTTGTCTGAAAAGAGGAGGAGGAGTAGGATCAATGAGAAAATGAAGGCATTGCAAAATCTCATCCCAAATTCTAACAAGACGGACAAGGCTTCGATGCTTGATGAAGCCATTGAGTACCTCAAGCAGCTTCAGCTTCAAGTTCAGATGTTATCAATGAGGAATGGCATGAGTCTACATCCTTTGTGCCTACCTGGAACGCTGCAACCCCTACAGCTCTCCCAGATGAGAATGGAGCTTGGTGAGGAAAATAGGCCTCTGCATTTGGACATGACAGGCACACTGCATATGAACCAGGAATCCTCAAGACAAAATTTGTTCAATTTATCCAACCAGTGCACTGCTGCAAACAAGTCATACGTACCAGACATGTCAAATGTAGTTAATTTAGAAACATCGTTTGGGTTGGAACCGTCAATTCAGTCTCATTTGGGACCCTTTCAACTGCCAGCCTCATCTCAGCTGCAGGGACAACCTTTTGCAGCACCAAAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009639 GO:0009791 GO:0009889 GO:0009900 GO:0009908 GO:0010029 GO:0010047 GO:0010114 GO:0010154 GO:0010187 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048511 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048609 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1900140 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

307

Amino Acids

33.34

Weight (kDa)

5.78

Isoelectric Point (pI)

75.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36930
fragaria_vesca	FvH4_1g16230 FvH4_1g16230 FvH4_1g16230 FvH4_1g16230
malus_domestica	MD02G1174600.v1.1 MD15G1285600.v1.1
prunus_persica	Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1
pyrus_communis	pycom02g14090 pycom15g24860
rosa_chinensis	RchiOBHm_Chr2g0105931
rosa_laevigata	RLG00000017471
rosa_multiflora	Rmu_sc0004367.1_g000014
rosa_roxburghii	Rroxscaffold_2G00137560 Rroxscaffold_2G00137710
rosa_rugosa	Rorug02G0132100 Rorug02G0132200 Rorug02G0132300
rosa_samantha	Rh2AG182600 Rh2BG192600 Rh2CG187200 Rh2DG189200
rosa_wichuraiana	Rw2G014330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	598
AccII	CGCG	1 cut(s)	275
AciI	CCGC	6 cut(s)	71, 74, 84, 158, 273, 381
AclWI	GGATC	3 cut(s)	244, 257, 461
AcoI	YGGCCR	2 cut(s)	81, 255
AcsI	RAATTY	2 cut(s)	493, 736
AcuI	CTGAAG	1 cut(s)	539
AfaI	GTAC	2 cut(s)	542, 786
AfiI	CCNNNNNNNGG	1 cut(s)	188
AflIII	ACRYGT	2 cut(s)	93, 792
AgsI	TTSAA	5 cut(s)	353, 396, 563, 745, 866
AhdI	GACNNNNNGTC	1 cut(s)	94
AjnI	CCWGG	3 cut(s)	202, 616, 717
AjuI	GAANNNNNNNTTGG	2 cut(s)	807, 839
AloI	GAACNNNNNNTCC	2 cut(s)	707, 739
AluBI	AGCT	7 cut(s)	65, 410, 553, 559, 640, 661, 886
AluI	AGCT	7 cut(s)	65, 410, 553, 559, 640, 661, 886
Alw21I	GWGCWC	2 cut(s)	196, 764
Alw26I	GTCTC	1 cut(s)	852
Alw44I	GTGCAC	1 cut(s)	760
AlwI	GGATC	3 cut(s)	244, 257, 461
AoxI	GGCC	5 cut(s)	81, 153, 255, 315, 677
ApaLI	GTGCAC	1 cut(s)	760
ApeKI	GCWGC	8 cut(s)	65, 109, 410, 550, 625, 767, 886, 905
ApoI	RAATTY	2 cut(s)	493, 736
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	2 cut(s)	154, 857
AsuC2I	CCSGG	2 cut(s)	148, 254
AsuHPI	GGTGA	1 cut(s)	677
AvaII	GGWCC	1 cut(s)	857
BaeGI	GKGCMC	1 cut(s)	764
BamHI	GGATCC	1 cut(s)	249
Bbv12I	GWGCWC	2 cut(s)	196, 764
BbvI	GCAGC	8 cut(s)	52, 121, 397, 562, 612, 754, 873, 917
BceAI	ACGGC	2 cut(s)	166, 242
BciT130I	CCWGG	3 cut(s)	204, 618, 719
BcnI	CCSGG	2 cut(s)	148, 254
BcoDI	GTCTC	1 cut(s)	852
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	4 cut(s)	107, 411, 635, 887
Bme1390I	CCNGG	5 cut(s)	148, 204, 254, 618, 719
Bme18I	GGWCC	1 cut(s)	857
BmeRI	GACNNNNNGTC	1 cut(s)	94
BmgT120I	GGNCC	2 cut(s)	154, 857
BmiI	GGNNCC	5 cut(s)	156, 251, 834, 858, 859
BmrFI	CCNGG	5 cut(s)	148, 204, 254, 618, 719
BmsI	GCATC	1 cut(s)	510
BpmI	CTGGAG	1 cut(s)	45
BpuEI	CTTGAG	2 cut(s)	530, 712
BpuMI	CCSGG	2 cut(s)	148, 254
BsaAI	YACGTR	1 cut(s)	784
BsaWI	WCCGGW	1 cut(s)	284
BsaXI	ACNNNNNCTCC	2 cut(s)	433, 463
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	757
Bse3DI	GCAATG	1 cut(s)	473
BseBI	CCWGG	3 cut(s)	204, 618, 719
BseGI	GGATG	3 cut(s)	289, 486, 601
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMI	GCAATG	1 cut(s)	473
BseMII	CTCAG	1 cut(s)	896
BseNI	ACTGG	1 cut(s)	757
BseRI	GAGGAG	5 cut(s)	48, 356, 454, 457, 460
BseSI	GKGCMC	1 cut(s)	764
BseX3I	CGGCCG	2 cut(s)	81, 255
BseXI	GCAGC	8 cut(s)	52, 121, 397, 562, 612, 754, 873, 917
Bsh1236I	CGCG	1 cut(s)	275
Bsh1285I	CGRYCG	5 cut(s)	25, 84, 217, 258, 385
BshFI	GGCC	5 cut(s)	83, 155, 257, 317, 679
BsiEI	CGRYCG	5 cut(s)	25, 84, 217, 258, 385
BsiHKAI	GWGCWC	2 cut(s)	196, 764
BsiSI	CCGG	3 cut(s)	147, 254, 285
BslFI	GGGAC	3 cut(s)	20, 870, 906
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	852
BsmFI	GGGAC	3 cut(s)	20, 870, 906
BsmI	GAATGC	2 cut(s)	23, 76
BsnI	GGCC	5 cut(s)	83, 155, 257, 317, 679
Bsp1286I	GDGCHC	2 cut(s)	196, 764
Bsp143I	GATC	3 cut(s)	22, 249, 453
BspACI	CCGC	6 cut(s)	71, 74, 84, 158, 273, 381
BspANI	GGCC	5 cut(s)	83, 155, 257, 317, 679
BspCNI	CTCAG	1 cut(s)	895
BspFNI	CGCG	1 cut(s)	275
BspLI	GGNNCC	5 cut(s)	156, 251, 834, 858, 859
BspMAI	CTGCAG	3 cut(s)	111, 415, 891
BspPI	GGATC	3 cut(s)	244, 257, 461
BspQI	GCTCTTC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	473
BsrI	ACTGG	1 cut(s)	757
BssMI	GATC	3 cut(s)	22, 249, 453
Bst2UI	CCWGG	3 cut(s)	204, 618, 719
Bst4CI	ACNGT	3 cut(s)	218, 332, 837
Bst6I	CTCTTC	1 cut(s)	201
BstBAI	YACGTR	1 cut(s)	784
BstC8I	GCNNGC	1 cut(s)	873
BstDEI	CTNAG	2 cut(s)	238, 882
BstF5I	GGATG	3 cut(s)	289, 486, 601
BstFNI	CGCG	1 cut(s)	275
BstHHI	GCGC	1 cut(s)	126
BstKTI	GATC	3 cut(s)	25, 252, 456
BstMAI	GTCTC	1 cut(s)	852
BstMBI	GATC	3 cut(s)	22, 249, 453
BstMCI	CGRYCG	5 cut(s)	25, 84, 217, 258, 385
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 556
BstNI	CCWGG	3 cut(s)	204, 618, 719
BstNSI	RCATGY	2 cut(s)	97, 796
BstSCI	CCNGG	5 cut(s)	146, 202, 252, 616, 717
BstSFI	CTRYAG	4 cut(s)	107, 411, 635, 887
BstSLI	GKGCMC	1 cut(s)	764
BstSNI	TACGTA	1 cut(s)	784
BstUI	CGCG	1 cut(s)	275
BstV1I	GCAGC	8 cut(s)	52, 121, 397, 562, 612, 754, 873, 917
BstX2I	RGATCY	1 cut(s)	249
BstYI	RGATCY	1 cut(s)	249
BstZI	CGGCCG	2 cut(s)	81, 255
BsuRI	GGCC	5 cut(s)	83, 155, 257, 317, 679
BtsCI	GGATG	3 cut(s)	289, 486, 601
BtsI	GCAGTG	2 cut(s)	704, 762
BtsIMutI	CAGTG	3 cut(s)	704, 762, 764
Cac8I	GCNNGC	1 cut(s)	873
CfoI	GCGC	1 cut(s)	126
Cfr13I	GGNCC	2 cut(s)	154, 857
Csp6I	GTAC	2 cut(s)	541, 785
CviAII	CATG	4 cut(s)	94, 592, 694, 793
CviQI	GTAC	2 cut(s)	541, 785
DdeI	CTNAG	2 cut(s)	238, 882
DpnI	GATC	3 cut(s)	24, 251, 455
DpnII	GATC	3 cut(s)	22, 249, 453
DriI	GACNNNNNGTC	1 cut(s)	94
EaeI	YGGCCR	2 cut(s)	81, 255
EagI	CGGCCG	2 cut(s)	81, 255
Eam1104I	CTCTTC	1 cut(s)	201
Eam1105I	GACNNNNNGTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	201
EciI	GGCGGA	1 cut(s)	60
EclXI	CGGCCG	2 cut(s)	81, 255
Eco105I	TACGTA	1 cut(s)	784
Eco147I	AGGCCT	1 cut(s)	679
Eco47I	GGWCC	1 cut(s)	857
Eco52I	CGGCCG	2 cut(s)	81, 255
Eco57I	CTGAAG	1 cut(s)	539
EcoO109I	RGGNCCY	2 cut(s)	154, 857
EcoRII	CCWGG	3 cut(s)	202, 616, 717
FaeI	CATG	4 cut(s)	97, 595, 697, 796
FaiI	YATR	9 cut(s)	95, 327, 423, 593, 695, 711, 713, 781, 794
FaqI	GGGAC	3 cut(s)	20, 870, 906
FatI	CATG	4 cut(s)	93, 591, 693, 792
FauI	CCCGC	1 cut(s)	165
FauNDI	CATATG	1 cut(s)	711
FblI	GTMKAC	1 cut(s)	598
FokI	GGATG	3 cut(s)	276, 473, 588
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	1 cut(s)	125
GsuI	CTGGAG	1 cut(s)	45
HaeIII	GGCC	5 cut(s)	83, 155, 257, 317, 679
HapII	CCGG	3 cut(s)	147, 254, 285
HhaI	GCGC	1 cut(s)	126
Hin1II	CATG	4 cut(s)	97, 595, 697, 796
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HinfI	GANTC	3 cut(s)	263, 595, 722
HpaII	CCGG	3 cut(s)	147, 254, 285
HphI	GGTGA	1 cut(s)	677
Hpy166II	GTNNAC	2 cut(s)	599, 762
Hpy188I	TCNGA	3 cut(s)	387, 433, 570
Hpy188III	TCNNGA	3 cut(s)	212, 350, 729
Hpy8I	GTNNAC	2 cut(s)	599, 762
Hpy99I	CGWCG	3 cut(s)	92, 248, 323
HpyAV	CCTTC	2 cut(s)	145, 463
HpyCH4III	ACNGT	3 cut(s)	218, 332, 837
HpyCH4IV	ACGT	1 cut(s)	783
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 556
HpyF3I	CTNAG	2 cut(s)	238, 882
HpySE526I	ACGT	1 cut(s)	783
Hsp92II	CATG	4 cut(s)	97, 595, 697, 796
HspAI	GCGC	1 cut(s)	124
KflI	GGGWCCC	1 cut(s)	857
Kzo9I	GATC	3 cut(s)	22, 249, 453
LguI	GCTCTTC	1 cut(s)	201
LmnI	GCTCC	2 cut(s)	73, 658
Lsp1109I	GCAGC	8 cut(s)	52, 121, 397, 562, 612, 754, 873, 917
LweI	GCATC	1 cut(s)	510
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	1 cut(s)	783
MalI	GATC	3 cut(s)	24, 251, 455
MboI	GATC	3 cut(s)	22, 249, 453
MboII	GAAGA	4 cut(s)	42, 45, 188, 384
MflI	RGATCY	1 cut(s)	249
MhlI	GDGCHC	2 cut(s)	196, 764
MluCI	AATT	7 cut(s)	424, 493, 736, 745, 808, 840, 916
MlyI	GAGTC	1 cut(s)	604
MmeI	TCCRAC	3 cut(s)	365, 777, 810
MseI	TTAA	1 cut(s)	807
MspA1I	CMGCKG	2 cut(s)	65, 886
MspI	CCGG	3 cut(s)	147, 254, 285
MspR9I	CCNGG	5 cut(s)	148, 204, 254, 618, 719
Mva1269I	GAATGC	2 cut(s)	23, 76
MvaI	CCWGG	3 cut(s)	204, 618, 719
MvnI	CGCG	1 cut(s)	275
MwoI	GCNNNNNNNGC	2 cut(s)	106, 556
NciI	CCSGG	2 cut(s)	148, 254
NdeI	CATATG	1 cut(s)	711
NdeII	GATC	3 cut(s)	22, 249, 453
NlaIII	CATG	4 cut(s)	97, 595, 697, 796
NlaIV	GGNNCC	5 cut(s)	156, 251, 834, 858, 859
NspI	RCATGY	2 cut(s)	97, 796
PceI	AGGCCT	1 cut(s)	679
PciI	ACATGT	2 cut(s)	93, 792
PciSI	GCTCTTC	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	2 cut(s)	179, 318
PctI	GAATGC	2 cut(s)	23, 76
PfeI	GAWTC	2 cut(s)	263, 722
PfoI	TCCNGGA	1 cut(s)	146
Ple19I	CGATCG	1 cut(s)	25
PleI	GAGTC	1 cut(s)	603
PpsI	GAGTC	1 cut(s)	603
Ppu21I	YACGTR	1 cut(s)	784
PpuMI	RGGWCCY	1 cut(s)	857
PscI	ACATGT	2 cut(s)	93, 792
Psp5II	RGGWCCY	1 cut(s)	857
Psp6I	CCWGG	3 cut(s)	202, 616, 717
PspGI	CCWGG	3 cut(s)	202, 616, 717
PspN4I	GGNNCC	5 cut(s)	156, 251, 834, 858, 859
PspPI	GGNCC	2 cut(s)	154, 857
PspPPI	RGGWCCY	1 cut(s)	857
PstI	CTGCAG	3 cut(s)	111, 415, 891
PsuI	RGATCY	1 cut(s)	249
PvuI	CGATCG	1 cut(s)	25
PvuII	CAGCTG	2 cut(s)	65, 886
RsaI	GTAC	2 cut(s)	542, 786
RsaNI	GTAC	2 cut(s)	541, 785
SapI	GCTCTTC	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	807
Sau3AI	GATC	3 cut(s)	22, 249, 453
Sau96I	GGNCC	2 cut(s)	154, 857
SchI	GAGTC	1 cut(s)	604
ScrFI	CCNGG	5 cut(s)	148, 204, 254, 618, 719
SduI	GDGCHC	2 cut(s)	196, 764
SfaNI	GCATC	1 cut(s)	510
SfcI	CTRYAG	4 cut(s)	107, 411, 635, 887
SinI	GGWCC	1 cut(s)	857
SmlI	CTYRAG	2 cut(s)	545, 727
SmoI	CTYRAG	2 cut(s)	545, 727
SnaBI	TACGTA	1 cut(s)	784
Sse9I	AATT	7 cut(s)	424, 493, 736, 745, 808, 840, 916
SseBI	AGGCCT	1 cut(s)	679
SsiI	CCGC	6 cut(s)	71, 74, 84, 158, 273, 381
SspMI	CTAG	1 cut(s)	132
StuI	AGGCCT	1 cut(s)	679
StyD4I	CCNGG	5 cut(s)	146, 202, 252, 616, 717
TaaI	ACNGT	3 cut(s)	218, 332, 837
TaiI	ACGT	1 cut(s)	786
TaqI	TCGA	2 cut(s)	213, 518
TasI	AATT	7 cut(s)	424, 493, 736, 745, 808, 840, 916
TauI	GCSGC	3 cut(s)	76, 86, 275
TfiI	GAWTC	2 cut(s)	263, 722
Tru1I	TTAA	1 cut(s)	807
Tru9I	TTAA	1 cut(s)	807
TscAI	CASTG	3 cut(s)	711, 764, 769
TseI	GCWGC	8 cut(s)	65, 109, 410, 550, 625, 767, 886, 905
TspDTI	ATGAA	4 cut(s)	410, 482, 543, 728
TspGWI	ACGGA	3 cut(s)	175, 210, 521
TspRI	CASTG	3 cut(s)	711, 764, 769
VneI	GTGCAC	1 cut(s)	760
VpaK11BI	GGWCC	1 cut(s)	857
XapI	RAATTY	2 cut(s)	493, 736
XceI	RCATGY	2 cut(s)	97, 796
XmiI	GTMKAC	1 cut(s)	598
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.