Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004975

Physical Location & Seq

Genomic Coordinates Reverse (-)

11401648 .. 11403511

Gene Structure 1864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0132100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGCTGATGAGGCCGGTTCACATGGCAAGAGAGTGTGTATGGTGCCTGAACGTGCGAGGATTCACATGGCTTTAACTTTCCTGCAGTCGAGCAATGCAGTGCAACATATCGTCATCAGGAGTGTGCTTAACATGGGTGTAAACCAGCTTATTTTCCCAGTTTACAGGAGCATCACCGCGCTGCTTCTGCTTTTTCCGTTTGCATACTTTTTGGAGAGAAAAGATAGACCACCACTGAATATATCCCTTGTTATGCAGTTTTTTCTCCTGGGACTTATTGGGGTCACCTGCAATCAAGGATTCTACCTCTTGGGTTTGGAGAACACATCAGCCACATTTGTTTCTGCAGTAGAGAATGCAGTCCCTGCAGGAACATTTCTCATGGCTGCCGTATTAAGAATTGAACAAGTTCACTTGAATAGAAAAGATGGCAAAGCCAAAGTGCTTGGAGTTCTGGCTTCTGTTGCAGGAGCCTCAGTCATAACCTTTTACAAGGGGCCAACTATATATGTTCCTCCAAGGACTTCACCTTCAGGCCAATCCCATATGCTCCTCTCGTTATTTGGAGATGCCAGGGAGAAGAACTGGACCTTTGGTTGCATTTGTGCTATAGGTCATTGCGTATGTTGGTTTAGCTGGATTGTCCTACAAGGACCTGTTTTGAAGAAGTACCCAGCTCGCCTCTCAGTCACCTCATTTACTCTCTTCTTTGGCATTCTGCAACTTTCAGCAATTGCAGCGTATGTAGAGAGAGACTCCCAAGAGTGGCAGATCCATTCCGGCAGTGCAATCTTGGGCATTCTCTACGTGGGAGTGGTGGCTTCAGCAATGTCTTATGCAATACAGCTATGGGCGATTGACAAGGGAGGACCGGTGTTTGTTTCAGTGTATATGCCTCTACAGACTTTACTCGTAGATATAATGGACTCGGTCATTATGGGTGCACAATTCTACTTGGGAGGCATTGTTGGAGCAGTGCTGATCGTAGCAGGACTATACCTTGTAGTGTGGGGAAAAAGCAAAGAGAGCAAATTTGGCAAAGAAATGAAGTTGAAAACTTCACCAGTGCCATTGAACATTGATAATCAGATTAAATATTATTCTGAAGAAGAAAAAGAATCTTCTCTCGTCCAACCATTGCTCCCTACCTCTTCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009639 GO:0009791 GO:0009889 GO:0009900 GO:0009908 GO:0010029 GO:0010047 GO:0010114 GO:0010154 GO:0010187 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048511 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048609 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1900140 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

386

Amino Acids

42.33

Weight (kDa)

9.1

Isoelectric Point (pI)

46.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	37 - 162	7.3e-12	EamA-like transporter family
EamA	PF00892	198 - 336	2.1e-13	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36930
fragaria_vesca	FvH4_1g16230 FvH4_1g16230 FvH4_1g16230 FvH4_1g16230
malus_domestica	MD02G1174600.v1.1 MD15G1285600.v1.1
prunus_persica	Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1
pyrus_communis	pycom02g14090 pycom15g24860
rosa_chinensis	RchiOBHm_Chr2g0105931
rosa_laevigata	RLG00000017471
rosa_multiflora	Rmu_sc0004367.1_g000014
rosa_roxburghii	Rroxscaffold_2G00137560 Rroxscaffold_2G00137710
rosa_rugosa	Rorug02G0132100 Rorug02G0132200 Rorug02G0132300
rosa_samantha	Rh2AG182600 Rh2BG192600 Rh2CG187200 Rh2DG189200
rosa_wichuraiana	Rw2G014330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	296
Acc36I	ACCTGC	1 cut(s)	296
AccB1I	GGYRCC	1 cut(s)	43
AccII	CGCG	1 cut(s)	179
AciI	CCGC	1 cut(s)	177
AclWI	GGATC	1 cut(s)	766
AcsI	RAATTY	1 cut(s)	1031
AcuI	CTGAAG	3 cut(s)	516, 807, 1125
AfaI	GTAC	1 cut(s)	671
AfiI	CCNNNNNNNGG	1 cut(s)	765
AgeI	ACCGGT	1 cut(s)	871
AgsI	TTSAA	6 cut(s)	404, 418, 664, 1054, 1075, 1155
AjnI	CCWGG	2 cut(s)	267, 572
AluBI	AGCT	4 cut(s)	148, 636, 677, 847
AluI	AGCT	4 cut(s)	148, 636, 677, 847
Alw21I	GWGCWC	1 cut(s)	946
Alw26I	GTCTC	1 cut(s)	747
Alw44I	GTGCAC	1 cut(s)	942
AlwI	GGATC	1 cut(s)	766
AlwNI	CAGNNNCTG	1 cut(s)	365
AoxI	GGCC	3 cut(s)	12, 497, 535
ApaLI	GTGCAC	1 cut(s)	942
ApeKI	GCWGC	3 cut(s)	181, 386, 737
ApoI	RAATTY	1 cut(s)	1031
AsiGI	ACCGGT	1 cut(s)	871
Asp700I	GAANNNNTTC	1 cut(s)	408
AspLEI	GCGC	1 cut(s)	181
AspS9I	GGNCC	4 cut(s)	497, 588, 653, 869
AsuHPI	GGTGA	5 cut(s)	166, 277, 519, 682, 1053
AvaII	GGWCC	3 cut(s)	588, 653, 869
BaeGI	GKGCMC	1 cut(s)	946
BanI	GGYRCC	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	946
BbvI	GCAGC	3 cut(s)	168, 373, 749
BccI	CCATC	1 cut(s)	422
BceAI	ACGGC	1 cut(s)	374
BciT130I	CCWGG	2 cut(s)	269, 574
BcoDI	GTCTC	1 cut(s)	747
BfmI	CTRYAG	5 cut(s)	83, 345, 366, 609, 899
BfuAI	ACCTGC	1 cut(s)	296
BisI	GCNGC	3 cut(s)	182, 387, 738
BlsI	GCNGC	3 cut(s)	183, 388, 739
Bme1390I	CCNGG	2 cut(s)	269, 574
Bme18I	GGWCC	3 cut(s)	588, 653, 869
BmgT120I	GGNCC	4 cut(s)	497, 588, 653, 869
BmiI	GGNNCC	3 cut(s)	45, 472, 498
BmrFI	CCNGG	2 cut(s)	269, 574
BmrI	ACTGGG	1 cut(s)	152
BmsI	GCATC	2 cut(s)	180, 559
BmuI	ACTGGG	1 cut(s)	152
BplI	GAGNNNNNCTC	2 cut(s)	740, 772
BsaAI	YACGTR	1 cut(s)	808
BsaJI	CCNNGG	3 cut(s)	268, 518, 573
BsaWI	WCCGGW	1 cut(s)	871
BsaXI	ACNNNNNCTCC	8 cut(s)	462, 492, 858, 888, 951, 981, 1125, 1155
Bsc4I	CCNNNNNNNGG	1 cut(s)	765
Bse118I	RCCGGY	2 cut(s)	14, 871
Bse1I	ACTGG	3 cut(s)	158, 590, 1064
Bse3DI	GCAATG	4 cut(s)	100, 616, 834, 1136
BseBI	CCWGG	2 cut(s)	269, 574
BseDI	CCNNGG	3 cut(s)	268, 518, 573
BseLI	CCNNNNNNNGG	1 cut(s)	765
BseMI	GCAATG	4 cut(s)	100, 616, 834, 1136
BseMII	CTCAG	2 cut(s)	489, 699
BseNI	ACTGG	3 cut(s)	158, 590, 1064
BseRI	GAGGAG	1 cut(s)	542
BseSI	GKGCMC	1 cut(s)	946
BseXI	GCAGC	3 cut(s)	168, 373, 749
BseYI	CCCAGC	1 cut(s)	673
Bsh1236I	CGCG	1 cut(s)	179
BshFI	GGCC	3 cut(s)	14, 499, 537
BshNI	GGYRCC	1 cut(s)	43
BshTI	ACCGGT	1 cut(s)	871
BsiHKAI	GWGCWC	1 cut(s)	946
BsiSI	CCGG	3 cut(s)	15, 780, 872
BslFI	GGGAC	2 cut(s)	285, 347
BslI	CCNNNNNNNGG	1 cut(s)	765
BsmAI	GTCTC	1 cut(s)	747
BsmFI	GGGAC	2 cut(s)	285, 347
BsmI	GAATGC	3 cut(s)	361, 714, 798
BsnI	GGCC	3 cut(s)	14, 499, 537
Bsp1286I	GDGCHC	1 cut(s)	946
Bsp143I	GATC	2 cut(s)	771, 981
BspACI	CCGC	1 cut(s)	177
BspANI	GGCC	3 cut(s)	14, 499, 537
BspCNI	CTCAG	2 cut(s)	488, 698
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	3 cut(s)	45, 472, 498
BspMAI	CTGCAG	3 cut(s)	87, 349, 370
BspMI	ACCTGC	1 cut(s)	296
BspPI	GGATC	1 cut(s)	766
BspT107I	GGYRCC	1 cut(s)	43
BsrDI	GCAATG	4 cut(s)	100, 616, 834, 1136
BsrFI	RCCGGY	2 cut(s)	14, 871
BsrI	ACTGG	3 cut(s)	158, 590, 1064
BssAI	RCCGGY	2 cut(s)	14, 871
BssECI	CCNNGG	3 cut(s)	268, 518, 573
BssMI	GATC	2 cut(s)	771, 981
BssT1I	CCWWGG	1 cut(s)	518
Bst2UI	CCWGG	2 cut(s)	269, 574
Bst6I	CTCTTC	2 cut(s)	710, 1156
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstBAI	YACGTR	1 cut(s)	808
BstC8I	GCNNGC	1 cut(s)	679
BstDEI	CTNAG	2 cut(s)	475, 685
BstEII	GGTNACC	1 cut(s)	283
BstFNI	CGCG	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	2 cut(s)	774, 984
BstMAI	GTCTC	1 cut(s)	747
BstMBI	GATC	2 cut(s)	771, 981
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 187, 365, 464, 737, 1026, 1035
BstNI	CCWGG	2 cut(s)	269, 574
BstPI	GGTNACC	1 cut(s)	283
BstSCI	CCNGG	2 cut(s)	267, 572
BstSFI	CTRYAG	5 cut(s)	83, 345, 366, 609, 899
BstSLI	GKGCMC	1 cut(s)	946
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	3 cut(s)	168, 373, 749
BstX2I	RGATCY	1 cut(s)	771
BstYI	RGATCY	1 cut(s)	771
BsuRI	GGCC	3 cut(s)	14, 499, 537
BtsI	GCAGTG	3 cut(s)	105, 790, 981
BtsIMutI	CAGTG	6 cut(s)	105, 233, 790, 891, 981, 1071
BveI	ACCTGC	1 cut(s)	296
Cac8I	GCNNGC	1 cut(s)	679
CaiI	CAGNNNCTG	1 cut(s)	365
CfoI	GCGC	1 cut(s)	181
Cfr10I	RCCGGY	2 cut(s)	14, 871
Cfr13I	GGNCC	4 cut(s)	497, 588, 653, 869
Csp6I	GTAC	1 cut(s)	670
CspAI	ACCGGT	1 cut(s)	871
CviAII	CATG	4 cut(s)	23, 67, 133, 382
CviQI	GTAC	1 cut(s)	670
DdeI	CTNAG	2 cut(s)	475, 685
DpnI	GATC	2 cut(s)	773, 983
DpnII	GATC	2 cut(s)	771, 981
Eam1104I	CTCTTC	2 cut(s)	710, 1156
EarI	CTCTTC	2 cut(s)	710, 1156
Eco130I	CCWWGG	1 cut(s)	518
Eco47I	GGWCC	3 cut(s)	588, 653, 869
Eco57I	CTGAAG	3 cut(s)	516, 807, 1125
Eco91I	GGTNACC	1 cut(s)	283
EcoO109I	RGGNCCY	1 cut(s)	653
EcoO65I	GGTNACC	1 cut(s)	283
EcoRII	CCWGG	2 cut(s)	267, 572
EcoT14I	CCWWGG	1 cut(s)	518
ErhI	CCWWGG	1 cut(s)	518
FaeI	CATG	4 cut(s)	26, 70, 136, 385
FaqI	GGGAC	2 cut(s)	285, 347
FatI	CATG	4 cut(s)	22, 66, 132, 381
FauNDI	CATATG	1 cut(s)	546
Fnu4HI	GCNGC	3 cut(s)	182, 387, 738
Fsp4HI	GCNGC	3 cut(s)	182, 387, 738
GlaI	GCGC	1 cut(s)	180
GluI	GCNGC	3 cut(s)	182, 387, 738
GsaI	CCCAGC	1 cut(s)	677
HaeIII	GGCC	3 cut(s)	14, 499, 537
HapII	CCGG	3 cut(s)	15, 780, 872
HhaI	GCGC	1 cut(s)	181
Hin1II	CATG	4 cut(s)	26, 70, 136, 385
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HinfI	GANTC	5 cut(s)	61, 300, 755, 926, 1118
HpaII	CCGG	3 cut(s)	15, 780, 872
HphI	GGTGA	5 cut(s)	166, 277, 519, 682, 1053
Hpy166II	GTNNAC	5 cut(s)	20, 142, 163, 412, 944
Hpy188I	TCNGA	2 cut(s)	1089, 1105
Hpy188III	TCNNGA	1 cut(s)	118
Hpy8I	GTNNAC	5 cut(s)	20, 142, 163, 412, 944
HpyAV	CCTTC	1 cut(s)	540
HpyCH4IV	ACGT	2 cut(s)	52, 807
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 187, 365, 464, 737, 1026, 1035
HpyF3I	CTNAG	2 cut(s)	475, 685
HpySE526I	ACGT	2 cut(s)	52, 807
Hsp92II	CATG	4 cut(s)	26, 70, 136, 385
HspAI	GCGC	1 cut(s)	179
Kzo9I	GATC	2 cut(s)	771, 981
LmnI	GCTCC	5 cut(s)	168, 470, 555, 971, 1146
Lsp1109I	GCAGC	3 cut(s)	168, 373, 749
LweI	GCATC	2 cut(s)	180, 559
MaeII	ACGT	2 cut(s)	52, 807
MaeIII	GTNAC	2 cut(s)	283, 688
MalI	GATC	2 cut(s)	773, 983
MboI	GATC	2 cut(s)	771, 981
MboII	GAAGA	7 cut(s)	592, 676, 697, 1113, 1118, 1121, 1143
MfeI	CAATTG	1 cut(s)	732
MflI	RGATCY	1 cut(s)	771
MhlI	GDGCHC	1 cut(s)	946
MluCI	AATT	4 cut(s)	399, 732, 947, 1031
MlyI	GAGTC	2 cut(s)	749, 920
MmeI	TCCRAC	2 cut(s)	949, 1156
MroXI	GAANNNNTTC	1 cut(s)	408
MseI	TTAA	4 cut(s)	74, 129, 395, 1092
MspI	CCGG	3 cut(s)	15, 780, 872
MspR9I	CCNGG	2 cut(s)	269, 574
MunI	CAATTG	1 cut(s)	732
Mva1269I	GAATGC	3 cut(s)	361, 714, 798
MvaI	CCWGG	2 cut(s)	269, 574
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	7 cut(s)	11, 187, 365, 464, 737, 1026, 1035
NdeI	CATATG	1 cut(s)	546
NdeII	GATC	2 cut(s)	771, 981
NlaIII	CATG	4 cut(s)	26, 70, 136, 385
NlaIV	GGNNCC	3 cut(s)	45, 472, 498
NmuCI	GTSAC	2 cut(s)	283, 688
PaqCI	CACCTGC	1 cut(s)	296
PctI	GAATGC	3 cut(s)	361, 714, 798
PdmI	GAANNNNTTC	1 cut(s)	408
PfeI	GAWTC	3 cut(s)	61, 300, 1118
PflFI	GACNNNGTC	1 cut(s)	929
PinAI	ACCGGT	1 cut(s)	871
PkrI	GCNGC	3 cut(s)	183, 388, 739
PleI	GAGTC	2 cut(s)	749, 920
PpsI	GAGTC	2 cut(s)	749, 920
Ppu21I	YACGTR	1 cut(s)	808
PpuMI	RGGWCCY	1 cut(s)	653
Psp5II	RGGWCCY	1 cut(s)	653
Psp6I	CCWGG	2 cut(s)	267, 572
PspEI	GGTNACC	1 cut(s)	283
PspFI	CCCAGC	1 cut(s)	673
PspGI	CCWGG	2 cut(s)	267, 572
PspN4I	GGNNCC	3 cut(s)	45, 472, 498
PspPI	GGNCC	4 cut(s)	497, 588, 653, 869
PspPPI	RGGWCCY	1 cut(s)	653
PstI	CTGCAG	3 cut(s)	87, 349, 370
PstNI	CAGNNNCTG	1 cut(s)	365
PsuI	RGATCY	1 cut(s)	771
PsyI	GACNNNGTC	1 cut(s)	929
RsaI	GTAC	1 cut(s)	671
RsaNI	GTAC	1 cut(s)	670
SaqAI	TTAA	4 cut(s)	74, 129, 395, 1092
SatI	GCNGC	3 cut(s)	182, 387, 738
Sau3AI	GATC	2 cut(s)	771, 981
Sau96I	GGNCC	4 cut(s)	497, 588, 653, 869
SbfI	CCTGCAGG	1 cut(s)	370
SchI	GAGTC	2 cut(s)	749, 920
ScrFI	CCNGG	2 cut(s)	269, 574
SdaI	CCTGCAGG	1 cut(s)	370
SduI	GDGCHC	1 cut(s)	946
SfaNI	GCATC	2 cut(s)	180, 559
SfcI	CTRYAG	5 cut(s)	83, 345, 366, 609, 899
SinI	GGWCC	3 cut(s)	588, 653, 869
Sse8387I	CCTGCAGG	1 cut(s)	370
Sse9I	AATT	4 cut(s)	399, 732, 947, 1031
SsiI	CCGC	1 cut(s)	177
SspI	AATATT	1 cut(s)	1097
StyD4I	CCNGG	2 cut(s)	267, 572
StyI	CCWWGG	1 cut(s)	518
TaiI	ACGT	2 cut(s)	55, 810
TaqI	TCGA	1 cut(s)	89
TaqII	GACCGA	1 cut(s)	919
TasI	AATT	4 cut(s)	399, 732, 947, 1031
TfiI	GAWTC	3 cut(s)	61, 300, 1118
Tru1I	TTAA	4 cut(s)	74, 129, 395, 1092
Tru9I	TTAA	4 cut(s)	74, 129, 395, 1092
TscAI	CASTG	6 cut(s)	105, 240, 790, 891, 981, 1071
TseFI	GTSAC	2 cut(s)	283, 688
TseI	GCWGC	3 cut(s)	181, 386, 737
Tsp45I	GTSAC	2 cut(s)	283, 688
TspDTI	ATGAA	1 cut(s)	1061
TspGWI	ACGGA	1 cut(s)	186
TspRI	CASTG	6 cut(s)	105, 240, 790, 891, 981, 1071
Tth111I	GACNNNGTC	1 cut(s)	929
VneI	GTGCAC	1 cut(s)	942
VpaK11BI	GGWCC	3 cut(s)	588, 653, 869
XapI	RAATTY	1 cut(s)	1031
XmnI	GAANNNNTTC	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.