Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004975

Physical Location & Seq

Genomic Coordinates Forward (+)

75387967 .. 75390803

Gene Structure 2837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00137560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGGAATGGGGGATACATACGACTACAATTACCAAAACAAACCCTGTTCATCTTCAGCTCCTGCTTCTTCGGTCTCAGTTGCTCAGCCTCATTCGTCCACGGACGAAATCTCACTTTTTCTGCAACAGATTTTGGTGCGTTCTTCGTCTTTGAGCGGACAGCCGTTCTTGTTTTCGTCTTCGCCGGCTGGTTATGCTCTGCCGGAAAATCTCGGCCGTCCTTGCAACGATAGTTTCGTAGGCGGTGGGATCAGGGGCGTTGATGTCTCTACGGCGGTTGGGACGGGGAGTGGTCCGAATGTGTCTTCGTCGTCGGTCGGAGCGAGTGAGAATGAGGCCGACGAGTATGATTGTGAAAGTGAGGAGGGCCTTGAAGCGTTGGTAGAAGAGGCGGCAATGAAATCAGGTGGTCGAAGTTCTTCAAAGAGAAGCAGAGCTGCAGAAGTTCATAATTTGTCTGAAAAGAGGAGGAGGAGTAGGATTAATGAGAAAATGAAGGCATTGCAGAATCTCATCCCAAATTCTAATAAGACGGACAAGGCTTCAATGCTTGATGAAGCCATTGAGTACCTCAAGCAGCTCCAGCTTCAAGTACAGATGTTATCAATGAGAAATGGCATGAGCTTGCATCCCATGTGCCTACCTGGAGCGTCACAACTCTCTCAGATAAGAATGGACTTTGGTGAGGAAAATAGGCCTTTGCGCTTGAACATGTCAGGCACACTGAATATGAACCAGGAACCCTCAACACAAAATTTGTACAATCCAAACCGGTCGTATGTACCAGATATGTCCAACGTAGTAAATTCAGAAGACGCATTTGGGTTGGACTCATCTATTCAGGCTCACTTGGGACCCTTTCAGCTCCCAAACTCATCTAAGGGAATCTGCAGGGATGAACTGTTCCAGCATCAACTAACTAGTGTAAATCACTCGGAGACTAATCCCTTAGAATTTGAATTGGGAGCCACGGCTACAGTTTCACTTCCCTTTACTGCTCAAGTATCTGATCTGAAGGACAATAGTTCCCTGGAAACATGCATCATAGGAAGAGACCAGAGAGAAAGCAGGAACTCAAAGTTGATAGAGCAACATCTTCATCTTGACAGGAAGAAGGGTCCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009639 GO:0009791 GO:0009889 GO:0009900 GO:0009908 GO:0010029 GO:0010047 GO:0010114 GO:0010154 GO:0010187 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048511 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048609 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1900140 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

375

Amino Acids

40.9

Weight (kDa)

5.38

Isoelectric Point (pI)

60.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	148 - 195	5.7e-14	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	154 - 199	2.7e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36930
fragaria_vesca	FvH4_1g16230 FvH4_1g16230 FvH4_1g16230 FvH4_1g16230
malus_domestica	MD02G1174600.v1.1 MD15G1285600.v1.1
prunus_persica	Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1 Prupe.7G131400_v2.0.a1
pyrus_communis	pycom02g14090 pycom15g24860
rosa_chinensis	RchiOBHm_Chr2g0105931
rosa_laevigata	RLG00000017471
rosa_multiflora	Rmu_sc0004367.1_g000014
rosa_roxburghii	Rroxscaffold_2G00137560 Rroxscaffold_2G00137710
rosa_rugosa	Rorug02G0132100 Rorug02G0132200 Rorug02G0132300
rosa_samantha	Rh2AG182600 Rh2BG192600 Rh2CG187200 Rh2DG189200
rosa_wichuraiana	Rw2G014330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	156
AciI	CCGC	4 cut(s)	156, 243, 275, 392
AclWI	GGATC	1 cut(s)	257
AcoI	YGGCCR	1 cut(s)	214
AcsI	RAATTY	4 cut(s)	520, 754, 805, 953
AcuI	CTGAAG	2 cut(s)	39, 1034
AfaI	GTAC	4 cut(s)	569, 594, 761, 783
AflIII	ACRYGT	1 cut(s)	711
AgeI	ACCGGT	1 cut(s)	771
AgsI	TTSAA	6 cut(s)	374, 423, 546, 590, 709, 959
AhlI	ACTAGT	1 cut(s)	920
AjnI	CCWGG	3 cut(s)	643, 735, 1029
AjuI	GAANNNNNNNTTGG	2 cut(s)	804, 836
AloI	GAACNNNNNNTCC	2 cut(s)	887, 919
AluBI	AGCT	6 cut(s)	59, 437, 580, 586, 624, 865
AluI	AGCT	6 cut(s)	59, 437, 580, 586, 624, 865
Alw26I	GTCTC	4 cut(s)	79, 271, 932, 1047
AlwI	GGATC	1 cut(s)	257
AlwNI	CAGNNNCTG	1 cut(s)	62
AoxI	GGCC	4 cut(s)	214, 336, 367, 695
ApeKI	GCWGC	2 cut(s)	437, 577
ApoI	RAATTY	4 cut(s)	520, 754, 805, 953
AseI	ATTAAT	1 cut(s)	483
AsiGI	ACCGGT	1 cut(s)	771
Asp700I	GAANNNNTTC	1 cut(s)	418
AspLEI	GCGC	1 cut(s)	705
AspS9I	GGNCC	4 cut(s)	293, 367, 854, 1118
AsuHPI	GGTGA	1 cut(s)	695
AvaII	GGWCC	3 cut(s)	293, 854, 1118
BbsI	GAAGAC	3 cut(s)	171, 297, 819
BbvI	GCAGC	2 cut(s)	424, 589
BceAI	ACGGC	4 cut(s)	148, 201, 288, 987
BciT130I	CCWGG	3 cut(s)	645, 737, 1031
BciVI	GTATCC	1 cut(s)	7
BcoDI	GTCTC	4 cut(s)	79, 271, 932, 1047
BcuI	ACTAGT	1 cut(s)	920
BfaI	CTAG	1 cut(s)	921
BfmI	CTRYAG	3 cut(s)	438, 889, 975
BfuI	GTATCC	1 cut(s)	7
BisI	GCNGC	3 cut(s)	393, 438, 578
BlpI	GCTNAGC	1 cut(s)	84
BlsI	GCNGC	3 cut(s)	394, 439, 579
Bme1390I	CCNGG	3 cut(s)	645, 737, 1031
Bme18I	GGWCC	3 cut(s)	293, 854, 1118
BmgT120I	GGNCC	4 cut(s)	293, 367, 854, 1118
BmiI	GGNNCC	5 cut(s)	741, 855, 856, 967, 1119
BmrFI	CCNGG	3 cut(s)	645, 737, 1031
BmsI	GCATC	3 cut(s)	637, 919, 1050
BpiI	GAAGAC	3 cut(s)	171, 297, 819
BpmI	CTGGAG	2 cut(s)	566, 666
Bpu1102I	GCTNAGC	1 cut(s)	84
BpuEI	CTTGAG	2 cut(s)	557, 984
BsaI	GGTCTC	2 cut(s)	79, 1047
BsaJI	CCNNGG	3 cut(s)	99, 969, 1029
BsaWI	WCCGGW	1 cut(s)	771
BsaXI	ACNNNNNCTCC	2 cut(s)	460, 490
Bse118I	RCCGGY	2 cut(s)	184, 771
Bse3DI	GCAATG	2 cut(s)	402, 500
BseBI	CCWGG	3 cut(s)	645, 737, 1031
BseDI	CCNNGG	3 cut(s)	99, 969, 1029
BseGI	GGATG	3 cut(s)	513, 628, 901
BseMI	GCAATG	2 cut(s)	402, 500
BseMII	CTCAG	3 cut(s)	90, 98, 677
BseRI	GAGGAG	4 cut(s)	377, 481, 484, 487
BseX3I	CGGCCG	1 cut(s)	214
BseXI	GCAGC	2 cut(s)	424, 589
Bsh1285I	CGRYCG	3 cut(s)	217, 318, 776
BshFI	GGCC	4 cut(s)	216, 338, 369, 697
BshTI	ACCGGT	1 cut(s)	771
BsiEI	CGRYCG	3 cut(s)	217, 318, 776
BsiSI	CCGG	3 cut(s)	185, 203, 772
BslFI	GGGAC	2 cut(s)	295, 867
BsmAI	GTCTC	4 cut(s)	79, 271, 932, 1047
BsmFI	GGGAC	2 cut(s)	295, 867
BsnI	GGCC	4 cut(s)	216, 338, 369, 697
Bso31I	GGTCTC	2 cut(s)	79, 1047
Bsp1407I	TGTACA	1 cut(s)	759
Bsp143I	GATC	2 cut(s)	249, 1009
Bsp1720I	GCTNAGC	1 cut(s)	84
BspACI	CCGC	4 cut(s)	156, 243, 275, 392
BspANI	GGCC	4 cut(s)	216, 338, 369, 697
BspCNI	CTCAG	3 cut(s)	89, 97, 676
BspLI	GGNNCC	5 cut(s)	741, 855, 856, 967, 1119
BspMAI	CTGCAG	2 cut(s)	442, 893
BspPI	GGATC	1 cut(s)	257
BspTNI	GGTCTC	2 cut(s)	79, 1047
BsrBI	CCGCTC	1 cut(s)	156
BsrDI	GCAATG	2 cut(s)	402, 500
BsrFI	RCCGGY	2 cut(s)	184, 771
BsrGI	TGTACA	1 cut(s)	759
BssAI	RCCGGY	2 cut(s)	184, 771
BssECI	CCNNGG	3 cut(s)	99, 969, 1029
BssMI	GATC	2 cut(s)	249, 1009
Bst2UI	CCWGG	3 cut(s)	645, 737, 1031
Bst4CI	ACNGT	2 cut(s)	903, 979
Bst6I	CTCTTC	2 cut(s)	381, 1045
BstAUI	TGTACA	1 cut(s)	759
BstC8I	GCNNGC	2 cut(s)	186, 626
BstDEI	CTNAG	5 cut(s)	76, 84, 663, 879, 949
BstDSI	CCRYGG	2 cut(s)	99, 969
BstF5I	GGATG	3 cut(s)	513, 628, 901
BstHHI	GCGC	1 cut(s)	705
BstKTI	GATC	2 cut(s)	252, 1012
BstMAI	GTCTC	4 cut(s)	79, 271, 932, 1047
BstMBI	GATC	2 cut(s)	249, 1009
BstMCI	CGRYCG	3 cut(s)	217, 318, 776
BstMWI	GCNNNNNNNGC	3 cut(s)	194, 222, 583
BstNI	CCWGG	3 cut(s)	645, 737, 1031
BstNSI	RCATGY	2 cut(s)	715, 1041
BstSCI	CCNGG	3 cut(s)	643, 735, 1029
BstSFI	CTRYAG	3 cut(s)	438, 889, 975
BstV1I	GCAGC	2 cut(s)	424, 589
BstV2I	GAAGAC	3 cut(s)	171, 297, 819
BstZI	CGGCCG	1 cut(s)	214
BsuI	GTATCC	1 cut(s)	7
BsuRI	GGCC	4 cut(s)	216, 338, 369, 697
BtgI	CCRYGG	2 cut(s)	99, 969
BtsCI	GGATG	3 cut(s)	513, 628, 901
BtsIMutI	CAGTG	1 cut(s)	722
Cac8I	GCNNGC	2 cut(s)	186, 626
CaiI	CAGNNNCTG	1 cut(s)	62
CfoI	GCGC	1 cut(s)	705
Cfr10I	RCCGGY	2 cut(s)	184, 771
Cfr13I	GGNCC	4 cut(s)	293, 367, 854, 1118
CseI	GACGC	2 cut(s)	639, 824
Csp6I	GTAC	4 cut(s)	568, 593, 760, 782
CspAI	ACCGGT	1 cut(s)	771
CviAII	CATG	4 cut(s)	619, 634, 712, 1038
CviQI	GTAC	4 cut(s)	568, 593, 760, 782
DdeI	CTNAG	5 cut(s)	76, 84, 663, 879, 949
DpnI	GATC	2 cut(s)	251, 1011
DpnII	GATC	2 cut(s)	249, 1009
EaeI	YGGCCR	1 cut(s)	214
EagI	CGGCCG	1 cut(s)	214
Eam1104I	CTCTTC	2 cut(s)	381, 1045
EarI	CTCTTC	2 cut(s)	381, 1045
EclXI	CGGCCG	1 cut(s)	214
Eco147I	AGGCCT	1 cut(s)	697
Eco31I	GGTCTC	2 cut(s)	79, 1047
Eco47I	GGWCC	3 cut(s)	293, 854, 1118
Eco52I	CGGCCG	1 cut(s)	214
Eco57I	CTGAAG	2 cut(s)	39, 1034
EcoO109I	RGGNCCY	3 cut(s)	367, 854, 1118
EcoRII	CCWGG	3 cut(s)	643, 735, 1029
EcoT22I	ATGCAT	1 cut(s)	1043
FaeI	CATG	4 cut(s)	622, 637, 715, 1041
FaqI	GGGAC	2 cut(s)	295, 867
FatI	CATG	4 cut(s)	618, 633, 711, 1037
Fnu4HI	GCNGC	3 cut(s)	393, 438, 578
FokI	GGATG	3 cut(s)	500, 615, 908
Fsp4HI	GCNGC	3 cut(s)	393, 438, 578
FspBI	CTAG	1 cut(s)	921
GlaI	GCGC	1 cut(s)	704
GluI	GCNGC	3 cut(s)	393, 438, 578
GsuI	CTGGAG	2 cut(s)	566, 666
HaeIII	GGCC	4 cut(s)	216, 338, 369, 697
HapII	CCGG	3 cut(s)	185, 203, 772
HgaI	GACGC	2 cut(s)	639, 824
HhaI	GCGC	1 cut(s)	705
Hin1II	CATG	4 cut(s)	622, 637, 715, 1041
Hin6I	GCGC	1 cut(s)	703
HinP1I	GCGC	1 cut(s)	703
HinfI	GANTC	3 cut(s)	508, 830, 885
HpaII	CCGG	3 cut(s)	185, 203, 772
HphI	GGTGA	1 cut(s)	695
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	8 cut(s)	297, 320, 460, 666, 811, 937, 1009, 1014
Hpy188III	TCNNGA	1 cut(s)	1103
Hpy8I	GTNNAC	1 cut(s)	99
Hpy99I	CGWCG	3 cut(s)	313, 316, 344
HpyAV	CCTTC	3 cut(s)	490, 1009, 1108
HpyCH4III	ACNGT	2 cut(s)	903, 979
HpyCH4IV	ACGT	1 cut(s)	798
HpyCH4V	TGCA	7 cut(s)	124, 225, 440, 505, 628, 891, 1041
HpyF10VI	GCNNNNNNNGC	3 cut(s)	194, 222, 583
HpyF3I	CTNAG	5 cut(s)	76, 84, 663, 879, 949
HpySE526I	ACGT	1 cut(s)	798
Hsp92II	CATG	4 cut(s)	622, 637, 715, 1041
HspAI	GCGC	1 cut(s)	703
KflI	GGGWCCC	1 cut(s)	854
KroI	GCCGGC	1 cut(s)	184
KroNI	GCCGGC	1 cut(s)	186
Kzo9I	GATC	2 cut(s)	249, 1009
LmnI	GCTCC	6 cut(s)	64, 320, 585, 647, 870, 965
Lsp1109I	GCAGC	2 cut(s)	424, 589
LweI	GCATC	3 cut(s)	637, 919, 1050
MaeI	CTAG	1 cut(s)	921
MaeII	ACGT	1 cut(s)	798
MaeIII	GTNAC	1 cut(s)	651
MalI	GATC	2 cut(s)	251, 1011
MbiI	CCGCTC	1 cut(s)	156
MboI	GATC	2 cut(s)	249, 1009
MluCI	AATT	7 cut(s)	28, 451, 520, 754, 805, 953, 959
MlyI	GAGTC	1 cut(s)	824
MmeI	TCCRAC	3 cut(s)	298, 807, 819
Mph1103I	ATGCAT	1 cut(s)	1043
MroNI	GCCGGC	1 cut(s)	184
MroXI	GAANNNNTTC	1 cut(s)	418
MseI	TTAA	1 cut(s)	483
MspI	CCGG	3 cut(s)	185, 203, 772
MspR9I	CCNGG	3 cut(s)	645, 737, 1031
MvaI	CCWGG	3 cut(s)	645, 737, 1031
MwoI	GCNNNNNNNGC	3 cut(s)	194, 222, 583
NaeI	GCCGGC	1 cut(s)	186
NdeII	GATC	2 cut(s)	249, 1009
NgoMIV	GCCGGC	1 cut(s)	184
NlaIII	CATG	4 cut(s)	622, 637, 715, 1041
NlaIV	GGNNCC	5 cut(s)	741, 855, 856, 967, 1119
NmeAIII	GCCGAG	1 cut(s)	192
NmuCI	GTSAC	1 cut(s)	651
NsiI	ATGCAT	1 cut(s)	1043
NspI	RCATGY	2 cut(s)	715, 1041
PceI	AGGCCT	1 cut(s)	697
PciI	ACATGT	1 cut(s)	711
PcsI	WCGNNNNNNNCGW	2 cut(s)	234, 320
PdiI	GCCGGC	1 cut(s)	186
PdmI	GAANNNNTTC	1 cut(s)	418
PfeI	GAWTC	2 cut(s)	508, 885
PinAI	ACCGGT	1 cut(s)	771
PkrI	GCNGC	3 cut(s)	394, 439, 579
PleI	GAGTC	1 cut(s)	824
PpsI	GAGTC	1 cut(s)	824
PpuMI	RGGWCCY	2 cut(s)	854, 1118
PscI	ACATGT	1 cut(s)	711
PshBI	ATTAAT	1 cut(s)	483
Psp5II	RGGWCCY	2 cut(s)	854, 1118
Psp6I	CCWGG	3 cut(s)	643, 735, 1029
PspGI	CCWGG	3 cut(s)	643, 735, 1029
PspN4I	GGNNCC	5 cut(s)	741, 855, 856, 967, 1119
PspPI	GGNCC	4 cut(s)	293, 367, 854, 1118
PspPPI	RGGWCCY	2 cut(s)	854, 1118
PstI	CTGCAG	2 cut(s)	442, 893
PstNI	CAGNNNCTG	1 cut(s)	62
RsaI	GTAC	4 cut(s)	569, 594, 761, 783
RsaNI	GTAC	4 cut(s)	568, 593, 760, 782
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	3 cut(s)	393, 438, 578
Sau3AI	GATC	2 cut(s)	249, 1009
Sau96I	GGNCC	4 cut(s)	293, 367, 854, 1118
SchI	GAGTC	1 cut(s)	824
ScrFI	CCNGG	3 cut(s)	645, 737, 1031
SfaNI	GCATC	3 cut(s)	637, 919, 1050
SfcI	CTRYAG	3 cut(s)	438, 889, 975
SinI	GGWCC	3 cut(s)	293, 854, 1118
SmlI	CTYRAG	2 cut(s)	572, 999
SmoI	CTYRAG	2 cut(s)	572, 999
SpeI	ACTAGT	1 cut(s)	920
Sse9I	AATT	7 cut(s)	28, 451, 520, 754, 805, 953, 959
SseBI	AGGCCT	1 cut(s)	697
SsiI	CCGC	4 cut(s)	156, 243, 275, 392
SspMI	CTAG	1 cut(s)	921
StuI	AGGCCT	1 cut(s)	697
StyD4I	CCNGG	3 cut(s)	643, 735, 1029
TaaI	ACNGT	2 cut(s)	903, 979
TaiI	ACGT	1 cut(s)	801
TaqI	TCGA	1 cut(s)	412
TaqII	GACCGA	2 cut(s)	61, 304
TasI	AATT	7 cut(s)	28, 451, 520, 754, 805, 953, 959
TatI	WGTACW	2 cut(s)	592, 759
TauI	GCSGC	1 cut(s)	395
TfiI	GAWTC	2 cut(s)	508, 885
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	1 cut(s)	729
TseFI	GTSAC	1 cut(s)	651
TseI	GCWGC	2 cut(s)	437, 577
Tsp45I	GTSAC	1 cut(s)	651
TspDTI	ATGAA	8 cut(s)	39, 413, 437, 509, 570, 746, 912, 1088
TspGWI	ACGGA	2 cut(s)	116, 548
TspRI	CASTG	1 cut(s)	729
VpaK11BI	GGWCC	3 cut(s)	293, 854, 1118
VspI	ATTAAT	1 cut(s)	483
XapI	RAATTY	4 cut(s)	520, 754, 805, 953
XceI	RCATGY	2 cut(s)	715, 1041
XmnI	GAANNNNTTC	1 cut(s)	418
XspI	CTAG	1 cut(s)	921
Zsp2I	ATGCAT	1 cut(s)	1043

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.