Rorug02G0132200

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
11412046 .. 11413955
1910 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0132200.1

Sequence Viewer

Length: 1152 bp
ATGGCTGATGAGGCTGGTTCATCATCAAGTACTAGTAGAGCTCATGGCAAGAGACTATGGTGTATGATGCCTGAACGTGCCCGGATTCACATGGCATTGACTGCCTTGCAGTTCAGTTATGCAGGGCAACATGTCATCCTCAGAACTGTGCTTAACATGGGTGTAAGCAAGCTTGTGTTCCCAGTTTACAGGAACATCATCGCGCTGCTTCTGCTCGGTCCCTTTGCATACTTTCTAGAGAAGAAAGATAGACCACCACTAAATTTTGGCCTTGTCATGCAGTTTTTCCTCATGGGACTTCTTGGGATCACATGCAATCAAGGATTGTACCTCTTGGGTTTGGAAAACACTTCGCCAACATTTGCTTCTGCAATAGAGAATGCAGTCCCTGCAATTACATTTTTCATGGCTGCACTATTCAGAATTGAACAAGTTCACTTGAATAGAAAAGATGGCAAAGCCAAGGTGCTTGGAACTCTGGCTTCTGTTGCTGGAGCCTCAGTCATAACCATTTACAAAGGGCCAACAATTTATGGACCCCCAAGTGATTCACAATATTTAAACCAATCTCATTCTCTGTTCTCATCAGTTGGAGATGCCAAGGAGAAGAATTGGACCTTGGGATGCATATGTCTAATTGGTCATTGCCTGTGTTGGTCTAGCTGGATTGTGCTACAAGCACCGGTTTTGAAGAAATACCCAGCTCGCCTTTCAGTCACCTCATTTACTTGCTTCTTTGGCATTCTGCAATGTTCTGCAATCGCGGGGATTGTAGAGAGAGATTCCCAAGCCTGGCAGGTCCATTCTGGTGGTGAAGTTGTTGCTATTCTCTACGCGGGAGTGGTGGCTTCAGCAATGGCATTTGCATTACAGATATGGGTGATTGAACGAGGAGGCCCAGTGTTCGTTTCAGTGTACCTGCCTCTACAGACATTACTGGTAGCTCTAATGGCCTCAGTCATTTTAGGTGAACAATTCTACTTGGGAGGCATTATTGGAGCAGTATTGATCGTAGCCGGACTCTACCTGGTGGTCTGGGGGAAAAATGAAGAGAGCAAGTTTGGCAATGAAAATGGTGAATTTCCTCGATCAATGCCTGCAGATGAACAATTCTCTCTCTTTCAGTCATTACTCAGTTCCTCTTCGAAGTAG

Protein Analysis

383

Amino Acids

41.67

Weight (kDa)

8.71

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 37 - 170 1.4e-13 EamA-like transporter family
EamA PF00892 207 - 345 3.9e-17 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 787, 927
AccII CGCG 3 cut(s) 203, 764, 836
AciI CCGC 2 cut(s) 764, 836
AclWI GGATC 1 cut(s) 314
AcsI RAATTY 2 cut(s) 262, 1079
AcuI CTGAAG 1 cut(s) 834
AfaI GTAC 3 cut(s) 31, 329, 917
AfiI CCNNNNNNNGG 1 cut(s) 792
AflIII ACRYGT 1 cut(s) 130
AgeI ACCGGT 1 cut(s) 682
AgsI TTSAA 4 cut(s) 428, 442, 691, 887
AhlI ACTAGT 1 cut(s) 32
AjnI CCWGG 2 cut(s) 791, 1026
AjuI GAANNNNNNNTTGG 4 cut(s) 349, 381, 602, 634
AluBI AGCT 5 cut(s) 41, 172, 663, 704, 944
AluI AGCT 5 cut(s) 41, 172, 663, 704, 944
Alw21I GWGCWC 1 cut(s) 43
Alw26I GTCTC 1 cut(s) 46
AlwI GGATC 1 cut(s) 314
AlwNI CAGNNNCTG 1 cut(s) 389
AoxI GGCC 4 cut(s) 268, 521, 895, 951
ApeKI GCWGC 2 cut(s) 205, 410
ApoI RAATTY 2 cut(s) 262, 1079
AsiGI ACCGGT 1 cut(s) 682
Asp700I GAANNNNTTC 1 cut(s) 432
AspLEI GCGC 1 cut(s) 205
AspS9I GGNCC 6 cut(s) 218, 521, 536, 615, 799, 896
AsuC2I CCSGG 1 cut(s) 82
AsuHPI GGTGA 5 cut(s) 709, 824, 892, 980, 1088
AsuII TTCGAA 1 cut(s) 1145
AvaII GGWCC 4 cut(s) 218, 536, 615, 799
BaeGI GKGCMC 1 cut(s) 82
BanII GRGCYC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 43
BbvI GCAGC 2 cut(s) 192, 397
BccI CCATC 1 cut(s) 446
BciT130I CCWGG 2 cut(s) 793, 1028
BcnI CCSGG 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 46
BcuI ACTAGT 1 cut(s) 32
BfaI CTAG 3 cut(s) 33, 236, 660
BfmI CTRYAG 2 cut(s) 926, 1098
BfuAI ACCTGC 2 cut(s) 787, 927
BisI GCNGC 2 cut(s) 206, 411
BlsI GCNGC 2 cut(s) 207, 412
BmcAI AGTACT 1 cut(s) 31
Bme1390I CCNGG 3 cut(s) 82, 793, 1028
Bme18I GGWCC 4 cut(s) 218, 536, 615, 799
BmgT120I GGNCC 6 cut(s) 218, 521, 536, 615, 799, 896
BmiI GGNNCC 3 cut(s) 220, 496, 538
BmrFI CCNGG 3 cut(s) 82, 793, 1028
BmrI ACTGGG 2 cut(s) 176, 893
BmsI GCATC 3 cut(s) 57, 586, 614
BmuI ACTGGG 2 cut(s) 176, 893
BpmI CTGGAG 1 cut(s) 513
Bpu14I TTCGAA 1 cut(s) 1145
BpuMI CCSGG 1 cut(s) 82
BsaJI CCNNGG 3 cut(s) 462, 600, 618
BsaWI WCCGGW 1 cut(s) 682
BsaXI ACNNNNNCTCC 4 cut(s) 486, 516, 885, 915
Bsc4I CCNNNNNNNGG 1 cut(s) 792
Bse118I RCCGGY 1 cut(s) 682
Bse1I ACTGG 3 cut(s) 182, 899, 942
Bse3DI GCAATG 4 cut(s) 643, 755, 861, 1072
BseBI CCWGG 2 cut(s) 793, 1028
BseDI CCNNGG 3 cut(s) 462, 600, 618
BseGI GGATG 2 cut(s) 135, 629
BseLI CCNNNNNNNGG 1 cut(s) 792
BseMI GCAATG 4 cut(s) 643, 755, 861, 1072
BseMII CTCAG 4 cut(s) 154, 513, 969, 1147
BseNI ACTGG 3 cut(s) 182, 899, 942
BseRI GAGGAG 1 cut(s) 906
BseSI GKGCMC 1 cut(s) 82
BseXI GCAGC 2 cut(s) 192, 397
BseYI CCCAGC 1 cut(s) 700
BsgI GTGCAG 1 cut(s) 396
Bsh1236I CGCG 3 cut(s) 203, 764, 836
BshFI GGCC 4 cut(s) 270, 523, 897, 953
BshTI ACCGGT 1 cut(s) 682
BsiHKAI GWGCWC 1 cut(s) 43
BsiSI CCGG 3 cut(s) 82, 683, 1017
BslFI GGGAC 3 cut(s) 204, 309, 371
BslI CCNNNNNNNGG 1 cut(s) 792
BsmAI GTCTC 1 cut(s) 46
BsmFI GGGAC 3 cut(s) 204, 309, 371
BsmI GAATGC 2 cut(s) 385, 741
BsnI GGCC 4 cut(s) 270, 523, 897, 953
Bsp119I TTCGAA 1 cut(s) 1145
Bsp1286I GDGCHC 2 cut(s) 43, 82
Bsp143I GATC 3 cut(s) 306, 1008, 1088
BspACI CCGC 2 cut(s) 764, 836
BspANI GGCC 4 cut(s) 270, 523, 897, 953
BspCNI CTCAG 4 cut(s) 153, 512, 968, 1146
BspFNI CGCG 3 cut(s) 203, 764, 836
BspLI GGNNCC 3 cut(s) 220, 496, 538
BspMAI CTGCAG 1 cut(s) 1102
BspMI ACCTGC 2 cut(s) 787, 927
BspPI GGATC 1 cut(s) 314
BspT104I TTCGAA 1 cut(s) 1145
BsrDI GCAATG 4 cut(s) 643, 755, 861, 1072
BsrFI RCCGGY 1 cut(s) 682
BsrI ACTGG 3 cut(s) 182, 899, 942
BssAI RCCGGY 1 cut(s) 682
BssECI CCNNGG 3 cut(s) 462, 600, 618
BssMI GATC 3 cut(s) 306, 1008, 1088
BssT1I CCWWGG 3 cut(s) 462, 600, 618
Bst2UI CCWGG 2 cut(s) 793, 1028
Bst4CI ACNGT 1 cut(s) 148
Bst6I CTCTTC 2 cut(s) 1044, 1147
BstAPI GCANNNNNTGC 2 cut(s) 101, 389
BstBI TTCGAA 1 cut(s) 1145
BstC8I GCNNGC 3 cut(s) 170, 706, 1098
BstDEI CTNAG 4 cut(s) 140, 499, 955, 1133
BstF5I GGATG 2 cut(s) 135, 629
BstFNI CGCG 3 cut(s) 203, 764, 836
BstHHI GCGC 1 cut(s) 205
BstKTI GATC 3 cut(s) 309, 1011, 1091
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 3 cut(s) 306, 1008, 1088
BstMWI GCNNNNNNNGC 8 cut(s) 11, 101, 211, 389, 488, 738, 950, 1062
BstNI CCWGG 2 cut(s) 793, 1028
BstNSI RCATGY 2 cut(s) 134, 315
BstSCI CCNGG 3 cut(s) 80, 791, 1026
BstSFI CTRYAG 2 cut(s) 926, 1098
BstSLI GKGCMC 1 cut(s) 82
BstUI CGCG 3 cut(s) 203, 764, 836
BstV1I GCAGC 2 cut(s) 192, 397
BstXI CCANNNNNNTGG 1 cut(s) 809
BsuRI GGCC 4 cut(s) 270, 523, 897, 953
BtgZI GCGATG 1 cut(s) 184
BtsCI GGATG 2 cut(s) 135, 629
BtsIMutI CAGTG 2 cut(s) 906, 918
BveI ACCTGC 2 cut(s) 787, 927
Cac8I GCNNGC 3 cut(s) 170, 706, 1098
CaiI CAGNNNCTG 1 cut(s) 389
CfoI GCGC 1 cut(s) 205
Cfr10I RCCGGY 1 cut(s) 682
Cfr13I GGNCC 6 cut(s) 218, 521, 536, 615, 799, 896
CsiI ACCWGGT 1 cut(s) 1026
Csp6I GTAC 3 cut(s) 30, 328, 916
CspAI ACCGGT 1 cut(s) 682
CviAII CATG 8 cut(s) 44, 91, 131, 157, 277, 292, 312, 406
CviQI GTAC 3 cut(s) 30, 328, 916
DdeI CTNAG 4 cut(s) 140, 499, 955, 1133
DpnI GATC 3 cut(s) 308, 1010, 1090
DpnII GATC 3 cut(s) 306, 1008, 1088
DraI TTTAAA 1 cut(s) 561
Eam1104I CTCTTC 2 cut(s) 1044, 1147
EarI CTCTTC 2 cut(s) 1044, 1147
Ecl136II GAGCTC 1 cut(s) 41
Eco130I CCWWGG 3 cut(s) 462, 600, 618
Eco24I GRGCYC 1 cut(s) 43
Eco47I GGWCC 4 cut(s) 218, 536, 615, 799
Eco53kI GAGCTC 1 cut(s) 41
Eco57I CTGAAG 1 cut(s) 834
EcoICRI GAGCTC 1 cut(s) 41
EcoRII CCWGG 2 cut(s) 791, 1026
EcoT14I CCWWGG 3 cut(s) 462, 600, 618
EcoT22I ATGCAT 1 cut(s) 629
EcoT38I GRGCYC 1 cut(s) 43
ErhI CCWWGG 3 cut(s) 462, 600, 618
FaeI CATG 8 cut(s) 47, 94, 134, 160, 280, 295, 315, 409
FaqI GGGAC 3 cut(s) 204, 309, 371
FatI CATG 8 cut(s) 43, 90, 130, 156, 276, 291, 311, 405
FauI CCCGC 2 cut(s) 757, 829
FauNDI CATATG 1 cut(s) 629
Fnu4HI GCNGC 2 cut(s) 206, 411
FokI GGATG 2 cut(s) 122, 636
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 2 cut(s) 206, 411
FspBI CTAG 3 cut(s) 33, 236, 660
GlaI GCGC 1 cut(s) 204
GluI GCNGC 2 cut(s) 206, 411
GsaI CCCAGC 1 cut(s) 704
GsuI CTGGAG 1 cut(s) 513
HaeIII GGCC 4 cut(s) 270, 523, 897, 953
HapII CCGG 3 cut(s) 82, 683, 1017
HhaI GCGC 1 cut(s) 205
Hin1II CATG 8 cut(s) 47, 94, 134, 160, 280, 295, 315, 409
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 4 cut(s) 85, 548, 782, 1020
HpaII CCGG 3 cut(s) 82, 683, 1017
HphI GGTGA 5 cut(s) 709, 824, 892, 980, 1088
Hpy166II GTNNAC 4 cut(s) 187, 436, 916, 971
Hpy188I TCNGA 2 cut(s) 143, 422
Hpy188III TCNNGA 1 cut(s) 236
Hpy8I GTNNAC 4 cut(s) 187, 436, 916, 971
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4IV ACGT 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 101, 211, 389, 488, 738, 950, 1062
HpyF3I CTNAG 4 cut(s) 140, 499, 955, 1133
HpySE526I ACGT 1 cut(s) 76
Hsp92II CATG 8 cut(s) 47, 94, 134, 160, 280, 295, 315, 409
HspAI GCGC 1 cut(s) 203
Kzo9I GATC 3 cut(s) 306, 1008, 1088
LmnI GCTCC 2 cut(s) 494, 998
Lsp1109I GCAGC 2 cut(s) 192, 397
LweI GCATC 3 cut(s) 57, 586, 614
MabI ACCWGGT 1 cut(s) 1026
MaeI CTAG 3 cut(s) 33, 236, 660
MaeII ACGT 1 cut(s) 76
MaeIII GTNAC 1 cut(s) 715
MalI GATC 3 cut(s) 308, 1010, 1090
MboI GATC 3 cut(s) 306, 1008, 1088
MboII GAAGA 5 cut(s) 253, 619, 703, 1061, 1134
MhlI GDGCHC 2 cut(s) 43, 82
MluCI AATT 9 cut(s) 262, 393, 423, 528, 610, 636, 974, 1079, 1109
MlyI GAGTC 1 cut(s) 1014
MmeI TCCRAC 1 cut(s) 571
Mph1103I ATGCAT 1 cut(s) 629
MroXI GAANNNNTTC 1 cut(s) 432
MseI TTAA 2 cut(s) 153, 560
MslI CAYNNNNRTG 1 cut(s) 807
MspI CCGG 3 cut(s) 82, 683, 1017
MspR9I CCNGG 3 cut(s) 82, 793, 1028
Mva1269I GAATGC 2 cut(s) 385, 741
MvaI CCWGG 2 cut(s) 793, 1028
MvnI CGCG 3 cut(s) 203, 764, 836
MwoI GCNNNNNNNGC 8 cut(s) 11, 101, 211, 389, 488, 738, 950, 1062
NciI CCSGG 1 cut(s) 82
NdeI CATATG 1 cut(s) 629
NdeII GATC 3 cut(s) 306, 1008, 1088
NlaIII CATG 8 cut(s) 47, 94, 134, 160, 280, 295, 315, 409
NlaIV GGNNCC 3 cut(s) 220, 496, 538
NmuCI GTSAC 1 cut(s) 715
NsiI ATGCAT 1 cut(s) 629
NspI RCATGY 2 cut(s) 134, 315
NspV TTCGAA 1 cut(s) 1145
PciI ACATGT 1 cut(s) 130
PctI GAATGC 2 cut(s) 385, 741
PdmI GAANNNNTTC 1 cut(s) 432
PfeI GAWTC 3 cut(s) 85, 548, 782
PinAI ACCGGT 1 cut(s) 682
PkrI GCNGC 2 cut(s) 207, 412
PleI GAGTC 1 cut(s) 1014
PpsI GAGTC 1 cut(s) 1014
PscI ACATGT 1 cut(s) 130
Psp124BI GAGCTC 1 cut(s) 43
Psp6I CCWGG 2 cut(s) 791, 1026
PspFI CCCAGC 1 cut(s) 700
PspGI CCWGG 2 cut(s) 791, 1026
PspN4I GGNNCC 3 cut(s) 220, 496, 538
PspPI GGNCC 6 cut(s) 218, 521, 536, 615, 799, 896
PstI CTGCAG 1 cut(s) 1102
PstNI CAGNNNCTG 1 cut(s) 389
RsaI GTAC 3 cut(s) 31, 329, 917
RsaNI GTAC 3 cut(s) 30, 328, 916
RseI CAYNNNNRTG 1 cut(s) 807
SacI GAGCTC 1 cut(s) 43
SaqAI TTAA 2 cut(s) 153, 560
SatI GCNGC 2 cut(s) 206, 411
Sau3AI GATC 3 cut(s) 306, 1008, 1088
Sau96I GGNCC 6 cut(s) 218, 521, 536, 615, 799, 896
ScaI AGTACT 1 cut(s) 31
SchI GAGTC 1 cut(s) 1014
ScrFI CCNGG 3 cut(s) 82, 793, 1028
SduI GDGCHC 2 cut(s) 43, 82
SexAI ACCWGGT 1 cut(s) 1026
SfaNI GCATC 3 cut(s) 57, 586, 614
SfcI CTRYAG 2 cut(s) 926, 1098
SfuI TTCGAA 1 cut(s) 1145
SinI GGWCC 4 cut(s) 218, 536, 615, 799
SmiMI CAYNNNNRTG 1 cut(s) 807
SpeI ACTAGT 1 cut(s) 32
Sse9I AATT 9 cut(s) 262, 393, 423, 528, 610, 636, 974, 1079, 1109
SsiI CCGC 2 cut(s) 764, 836
SspI AATATT 1 cut(s) 557
SspMI CTAG 3 cut(s) 33, 236, 660
SstI GAGCTC 1 cut(s) 43
StyD4I CCNGG 3 cut(s) 80, 791, 1026
StyI CCWWGG 3 cut(s) 462, 600, 618
TaaI ACNGT 1 cut(s) 148
TaiI ACGT 1 cut(s) 79
TaqI TCGA 2 cut(s) 1087, 1145
TaqII GACCGA 1 cut(s) 206
TasI AATT 9 cut(s) 262, 393, 423, 528, 610, 636, 974, 1079, 1109
TatI WGTACW 1 cut(s) 29
TfiI GAWTC 3 cut(s) 85, 548, 782
Tru1I TTAA 2 cut(s) 153, 560
Tru9I TTAA 2 cut(s) 153, 560
TscAI CASTG 2 cut(s) 906, 918
TseFI GTSAC 1 cut(s) 715
TseI GCWGC 2 cut(s) 205, 410
Tsp45I GTSAC 1 cut(s) 715
TspDTI ATGAA 5 cut(s) 9, 394, 1062, 1083, 1119
TspRI CASTG 2 cut(s) 906, 918
VpaK11BI GGWCC 4 cut(s) 218, 536, 615, 799
XapI RAATTY 2 cut(s) 262, 1079
XbaI TCTAGA 1 cut(s) 235
XceI RCATGY 2 cut(s) 134, 315
XmnI GAANNNNTTC 1 cut(s) 432
XspI CTAG 3 cut(s) 33, 236, 660
ZrmI AGTACT 1 cut(s) 31
Zsp2I ATGCAT 1 cut(s) 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.