Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009464

Physical Location & Seq

Genomic Coordinates Forward (+)

17477154 .. 17478729

Gene Structure 1576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G37090.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTCGGATAATAAAGACCGTGATTCCGATTCCGATGCTCCGGAGGAATTAACCCAGGAGCAGGCGAAGCTGGAAGAGGAAGCACTGTGGAAAATACAGAGAGAGAATAAGAATAGGGTTTCCCGTGAGAAGAAAGAGAGGCGCAAGCTTATGGCAGAGCAAGTAACTCTCCGAAAATCTCGAAAGATTGAAATAATTGAGGATGTAGTAGAAGAAGAAGAACCTGAGGAAAACTCTGAAGCTCTTGCAAACAAGGGATTCCTTTCCAAAGACATCATAGACTTTCTTGCGGAGCGAGAAAAACAAAAAGCTGAGTCAGATTCTGAAGAAGAAGAGATCATAGACGAACTCCCAAGAAAGAAAAAGCAAAAAAGCTCAGGGATCGAAACGGTTATTTACAAGGAGATTCCACCACCAGAATGCTTGAAAACCGGGTTAGATTTCTTGAAGATGAGGAGAGCGCAAGTCCCCAGATCGTCTTCAGTCATCAAGAACTCCGGCCAAGCTCTCCGACTTGCCACCGGTGCTGCTTTAGCCAAGAAACAGCGACAGAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

21.51

Weight (kDa)

5.94

Isoelectric Point (pI)

81.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37090 AT4G37090
fragaria_vesca	FvH4_1g14550
malus_domestica	MD00G1067500.v1.1 MD02G1159200.v1.1
prunus_persica	Prupe.7G145000_v2.0.a1 Prupe.7G145000_v2.0.a1
pyrus_communis	pycom02g12540
rosa_chinensis	RchiOBHm_Chr2g0103301
rosa_laevigata	RLG00000017221
rosa_multiflora	Rmu_sc0006743.1_g000007 Rmu_sc0007612.1_g000039
rosa_roxburghii	Rroxscaffold_2G00139760
rosa_rugosa	Rorug02G0113300
rosa_samantha	Rh2AG162000 Rh2BG169000 Rh2CG168900 Rh2DG167800 Rh6AG014000 Rh6BG012600
rosa_wichuraiana	Rw0G019390 Rw2G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	40
AciI	CCGC	1 cut(s)	290
AclWI	GGATC	1 cut(s)	389
AcoI	YGGCCR	1 cut(s)	499
AcuI	CTGAAG	3 cut(s)	258, 345, 465
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgeI	ACCGGT	1 cut(s)	521
AgsI	TTSAA	3 cut(s)	191, 427, 448
AjnI	CCWGG	1 cut(s)	54
AluBI	AGCT	6 cut(s)	70, 148, 242, 311, 375, 506
AluI	AGCT	6 cut(s)	70, 148, 242, 311, 375, 506
AlwI	GGATC	1 cut(s)	389
AlwNI	CAGNNNCTG	1 cut(s)	323
Aor13HI	TCCGGA	1 cut(s)	40
AoxI	GGCC	1 cut(s)	499
ApeKI	GCWGC	1 cut(s)	527
AsiGI	ACCGGT	1 cut(s)	521
AspLEI	GCGC	2 cut(s)	144, 463
AsuC2I	CCSGG	1 cut(s)	433
AxyI	CCTNAGG	1 cut(s)	225
BbsI	GAAGAC	1 cut(s)	471
BbvI	GCAGC	1 cut(s)	514
BcgI	CGANNNNNNTGC	2 cut(s)	17, 51
BciT130I	CCWGG	1 cut(s)	56
BcnI	CCSGG	1 cut(s)	433
BisI	GCNGC	1 cut(s)	528
BlsI	GCNGC	1 cut(s)	529
Bme1390I	CCNGG	2 cut(s)	56, 433
BmrFI	CCNGG	2 cut(s)	56, 433
BmsI	GCATC	1 cut(s)	25
BpiI	GAAGAC	1 cut(s)	471
BplI	GAGNNNNNCTC	2 cut(s)	218, 250
Bpu10I	CCTNAGC	1 cut(s)	376
BpuMI	CCSGG	1 cut(s)	433
BsaJI	CCNNGG	1 cut(s)	54
BsaWI	WCCGGW	2 cut(s)	40, 521
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse118I	RCCGGY	1 cut(s)	521
Bse21I	CCTNAGG	1 cut(s)	225
BseAI	TCCGGA	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	3 cut(s)	216, 303, 390
BseRI	GAGGAG	1 cut(s)	469
BseXI	GCAGC	1 cut(s)	514
BshFI	GGCC	1 cut(s)	501
BshTI	ACCGGT	1 cut(s)	521
BsiSI	CCGG	4 cut(s)	41, 432, 498, 522
BslFI	GGGAC	1 cut(s)	452
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmFI	GGGAC	1 cut(s)	452
BsmI	GAATGC	1 cut(s)	425
BsnI	GGCC	1 cut(s)	501
Bsp13I	TCCGGA	1 cut(s)	40
Bsp143I	GATC	3 cut(s)	336, 381, 473
BspACI	CCGC	1 cut(s)	290
BspANI	GGCC	1 cut(s)	501
BspCNI	CTCAG	3 cut(s)	217, 304, 389
BspEI	TCCGGA	1 cut(s)	40
BspPI	GGATC	1 cut(s)	389
BsrFI	RCCGGY	1 cut(s)	521
BssAI	RCCGGY	1 cut(s)	521
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	3 cut(s)	336, 381, 473
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	3 cut(s)	20, 87, 391
Bst6I	CTCTTC	2 cut(s)	69, 327
BstC8I	GCNNGC	2 cut(s)	63, 146
BstDEI	CTNAG	3 cut(s)	225, 312, 376
BstF5I	GGATG	1 cut(s)	208
BstHHI	GCGC	2 cut(s)	144, 463
BstKTI	GATC	3 cut(s)	339, 384, 476
BstMBI	GATC	3 cut(s)	336, 381, 473
BstMWI	GCNNNNNNNGC	3 cut(s)	67, 524, 533
BstNI	CCWGG	1 cut(s)	56
BstSCI	CCNGG	2 cut(s)	54, 431
BstV1I	GCAGC	1 cut(s)	514
BstV2I	GAAGAC	1 cut(s)	471
Bsu36I	CCTNAGG	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	501
BtsCI	GGATG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	83
Cac8I	GCNNGC	2 cut(s)	63, 146
CaiI	CAGNNNCTG	1 cut(s)	323
CfoI	GCGC	2 cut(s)	144, 463
Cfr10I	RCCGGY	1 cut(s)	521
CspAI	ACCGGT	1 cut(s)	521
CviJI	RGCY	8 cut(s)	70, 148, 242, 311, 375, 501, 506, 536
CviKI_1	RGCY	8 cut(s)	70, 148, 242, 311, 375, 501, 506, 536
DdeI	CTNAG	3 cut(s)	225, 312, 376
DpnI	GATC	3 cut(s)	338, 383, 475
DpnII	GATC	3 cut(s)	336, 381, 473
EaeI	YGGCCR	1 cut(s)	499
Eam1104I	CTCTTC	2 cut(s)	69, 327
EarI	CTCTTC	2 cut(s)	69, 327
Eco57I	CTGAAG	3 cut(s)	258, 345, 465
Eco81I	CCTNAGG	1 cut(s)	225
EcoRII	CCWGG	1 cut(s)	54
FaiI	YATR	3 cut(s)	152, 278, 341
FaqI	GGGAC	1 cut(s)	452
Fnu4HI	GCNGC	1 cut(s)	528
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	528
GlaI	GCGC	2 cut(s)	143, 462
GluI	GCNGC	1 cut(s)	528
HaeIII	GGCC	1 cut(s)	501
HapII	CCGG	4 cut(s)	41, 432, 498, 522
HhaI	GCGC	2 cut(s)	144, 463
Hin6I	GCGC	2 cut(s)	142, 461
HinP1I	GCGC	2 cut(s)	142, 461
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	6 cut(s)	23, 29, 258, 314, 320, 406
HpaII	CCGG	4 cut(s)	41, 432, 498, 522
Hpy188I	TCNGA	8 cut(s)	7, 28, 34, 173, 238, 319, 325, 512
Hpy188III	TCNNGA	4 cut(s)	41, 180, 445, 490
HpyCH4III	ACNGT	3 cut(s)	20, 87, 391
HpyCH4V	TGCA	1 cut(s)	248
HpyF10VI	GCNNNNNNNGC	3 cut(s)	67, 524, 533
HpyF3I	CTNAG	3 cut(s)	225, 312, 376
HspAI	GCGC	2 cut(s)	142, 461
Kpn2I	TCCGGA	1 cut(s)	40
Kzo9I	GATC	3 cut(s)	336, 381, 473
LmnI	GCTCC	3 cut(s)	43, 58, 292
Lsp1109I	GCAGC	1 cut(s)	514
LweI	GCATC	1 cut(s)	25
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	3 cut(s)	338, 383, 475
MboI	GATC	3 cut(s)	336, 381, 473
MluCI	AATT	2 cut(s)	47, 195
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	1 cut(s)	535
MnlI	CCTC	6 cut(s)	37, 70, 132, 193, 220, 447
MroI	TCCGGA	1 cut(s)	40
MseI	TTAA	1 cut(s)	50
MslI	CAYNNNNRTG	1 cut(s)	418
MspI	CCGG	4 cut(s)	41, 432, 498, 522
MspR9I	CCNGG	2 cut(s)	56, 433
Mva1269I	GAATGC	1 cut(s)	425
MvaI	CCWGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	3 cut(s)	67, 524, 533
NciI	CCSGG	1 cut(s)	433
NdeII	GATC	3 cut(s)	336, 381, 473
PctI	GAATGC	1 cut(s)	425
PfeI	GAWTC	5 cut(s)	23, 29, 258, 320, 406
PinAI	ACCGGT	1 cut(s)	521
PkrI	GCNGC	1 cut(s)	529
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PstNI	CAGNNNCTG	1 cut(s)	323
RseI	CAYNNNNRTG	1 cut(s)	418
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	1 cut(s)	528
Sau3AI	GATC	3 cut(s)	336, 381, 473
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	2 cut(s)	56, 433
SetI	ASST	7 cut(s)	72, 150, 226, 244, 313, 377, 508
SfaNI	GCATC	1 cut(s)	25
SgrAI	CRCCGGYG	1 cut(s)	521
SmiMI	CAYNNNNRTG	1 cut(s)	418
Sse9I	AATT	2 cut(s)	47, 195
SsiI	CCGC	1 cut(s)	290
StyD4I	CCNGG	2 cut(s)	54, 431
TaaI	ACNGT	3 cut(s)	20, 87, 391
TaqI	TCGA	2 cut(s)	181, 384
TasI	AATT	2 cut(s)	47, 195
TfiI	GAWTC	5 cut(s)	23, 29, 258, 320, 406
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TscAI	CASTG	1 cut(s)	90
TseI	GCWGC	1 cut(s)	527
TspRI	CASTG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.