Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0009464

Physical Location & Seq

Genomic Coordinates Reverse (-)

13025359 .. 13027472

Gene Structure 2114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1067500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTCGAACGGAGAAGATTACGACTCGGACACGCCGGAGGAGCTCACGGCCGAGCAGGGAGTTCAACAAGACCAAGAACTTAGCAAGCTCCAGAAAGAGCATAGTTCCAGGGTGGTTCGTGAAGCAAAAGAACGTCGTAGACAATGGACCCAAAAGAAAACACAAAAGCCATTTGCTGAAGTTGAAAGTGTTCAAGATACCTCTGAACCTAAAGCAAACCAAGAATCTTTGGGTAATGGAGGGATGCTTCCAAGCAACATTGTTGAGCTGCTTGCATCTCGTGAGAAGCAAAAGTTCCTCTCCGACTCTGAGGATGAGAAGACCGACTCAAAGTCCACTAAGAAAAAGAAAAAACTAAAATGCTCAGGGGTGGATGCTATTTTATTGAAGGAGACACCTGCCCCTCAATGCTTACAGAATTCCTTAGCGTTCTTGGAGAAAAGGAGAATGCAGGTACCTAGATCATCTGCAGTGTTGAACAACTCCGACCAAACATTACGCCTCCTCTCTTCGTCAGGCCTGTTAAGTAGACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

20.04

Weight (kDa)

8.47

Isoelectric Point (pI)

64.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37090 AT4G37090
fragaria_vesca	FvH4_1g14550
malus_domestica	MD00G1067500.v1.1 MD02G1159200.v1.1
prunus_persica	Prupe.7G145000_v2.0.a1 Prupe.7G145000_v2.0.a1
pyrus_communis	pycom02g12540
rosa_chinensis	RchiOBHm_Chr2g0103301
rosa_laevigata	RLG00000017221
rosa_multiflora	Rmu_sc0006743.1_g000007 Rmu_sc0007612.1_g000039
rosa_roxburghii	Rroxscaffold_2G00139760
rosa_rugosa	Rorug02G0113300
rosa_samantha	Rh2AG162000 Rh2BG169000 Rh2CG168900 Rh2DG167800 Rh6AG014000 Rh6BG012600
rosa_wichuraiana	Rw0G019390 Rw2G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	406
Acc36I	ACCTGC	2 cut(s)	406, 442
Acc65I	GGTACC	1 cut(s)	454
AccB1I	GGYRCC	1 cut(s)	454
AccI	GTMKAC	2 cut(s)	139, 529
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	418
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	1 cut(s)	456
AgsI	TTSAA	5 cut(s)	65, 185, 194, 388, 478
AhdI	GACNNNNNGTC	1 cut(s)	331
AjnI	CCWGG	1 cut(s)	107
AluBI	AGCT	3 cut(s)	43, 88, 268
AluI	AGCT	3 cut(s)	43, 88, 268
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	1 cut(s)	386
AoxI	GGCC	2 cut(s)	48, 517
ApeKI	GCWGC	1 cut(s)	268
ApoI	RAATTY	1 cut(s)	418
Asp700I	GAANNNNTTC	1 cut(s)	189
Asp718I	GGTACC	1 cut(s)	454
AspS9I	GGNCC	1 cut(s)	147
AvaII	GGWCC	1 cut(s)	147
BanI	GGYRCC	1 cut(s)	454
BanII	GRGCYC	1 cut(s)	45
BauI	CACGAG	1 cut(s)	279
BbsI	GAAGAC	1 cut(s)	326
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	255
BceAI	ACGGC	1 cut(s)	63
BciT130I	CCWGG	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	386
BfaI	CTAG	1 cut(s)	459
BfmI	CTRYAG	1 cut(s)	468
BfuAI	ACCTGC	2 cut(s)	406, 442
BisI	GCNGC	1 cut(s)	269
BlsI	GCNGC	1 cut(s)	270
Bme1390I	CCNGG	1 cut(s)	109
Bme18I	GGWCC	1 cut(s)	147
BmeRI	GACNNNNNGTC	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	147
BmiI	GGNNCC	2 cut(s)	149, 456
BmrFI	CCNGG	1 cut(s)	109
BmsI	GCATC	3 cut(s)	234, 284, 364
BpiI	GAAGAC	1 cut(s)	326
BpmI	CTGGAG	1 cut(s)	74
Bpu10I	CCTNAGC	2 cut(s)	364, 424
BsaJI	CCNNGG	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	109
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	3 cut(s)	249, 319, 379
BseMII	CTCAG	2 cut(s)	300, 378
BseRI	GAGGAG	2 cut(s)	53, 494
BseX3I	CGGCCG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	255
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	2 cut(s)	50, 519
BshNI	GGYRCC	1 cut(s)	454
BsiEI	CGRYCG	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	35
BsmAI	GTCTC	1 cut(s)	386
BsmI	GAATGC	1 cut(s)	453
BsnI	GGCC	2 cut(s)	50, 519
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	461
BspANI	GGCC	2 cut(s)	50, 519
BspCNI	CTCAG	2 cut(s)	301, 377
BspLI	GGNNCC	2 cut(s)	149, 456
BspMAI	CTGCAG	1 cut(s)	472
BspMI	ACCTGC	2 cut(s)	406, 442
BspT107I	GGYRCC	1 cut(s)	454
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	1 cut(s)	461
BssSI	CACGAG	1 cut(s)	279
Bst2BI	CACGAG	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	109
Bst4CI	ACNGT	1 cut(s)	534
Bst6I	CTCTTC	1 cut(s)	514
BstC8I	GCNNGC	2 cut(s)	86, 273
BstDEI	CTNAG	5 cut(s)	80, 309, 339, 364, 424
BstF5I	GGATG	3 cut(s)	249, 319, 379
BstKTI	GATC	1 cut(s)	464
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	1 cut(s)	461
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstNI	CCWGG	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	107
BstSFI	CTRYAG	1 cut(s)	468
BstV1I	GCAGC	1 cut(s)	255
BstV2I	GAAGAC	1 cut(s)	326
BstZI	CGGCCG	1 cut(s)	48
BsuRI	GGCC	2 cut(s)	50, 519
BtsCI	GGATG	3 cut(s)	249, 319, 379
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	1 cut(s)	477
BveI	ACCTGC	2 cut(s)	406, 442
Cac8I	GCNNGC	2 cut(s)	86, 273
Cfr13I	GGNCC	1 cut(s)	147
Csp6I	GTAC	1 cut(s)	455
CviJI	RGCY	6 cut(s)	43, 50, 88, 169, 268, 519
CviKI_1	RGCY	6 cut(s)	43, 50, 88, 169, 268, 519
CviQI	GTAC	1 cut(s)	455
DdeI	CTNAG	5 cut(s)	80, 309, 339, 364, 424
DpnI	GATC	1 cut(s)	463
DpnII	GATC	1 cut(s)	461
DriI	GACNNNNNGTC	1 cut(s)	331
EaeI	YGGCCR	1 cut(s)	48
EagI	CGGCCG	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	514
Eam1105I	GACNNNNNGTC	1 cut(s)	331
EarI	CTCTTC	1 cut(s)	514
Ecl136II	GAGCTC	1 cut(s)	43
EclXI	CGGCCG	1 cut(s)	48
Eco147I	AGGCCT	1 cut(s)	519
Eco24I	GRGCYC	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	147
Eco52I	CGGCCG	1 cut(s)	48
Eco53kI	GAGCTC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	198
EcoICRI	GAGCTC	1 cut(s)	43
EcoRI	GAATTC	1 cut(s)	418
EcoRII	CCWGG	1 cut(s)	107
EcoT38I	GRGCYC	1 cut(s)	45
FaiI	YATR	1 cut(s)	102
FblI	GTMKAC	2 cut(s)	139, 529
Fnu4HI	GCNGC	1 cut(s)	269
FokI	GGATG	3 cut(s)	256, 326, 386
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	269
FspBI	CTAG	1 cut(s)	459
GluI	GCNGC	1 cut(s)	269
GsuI	CTGGAG	1 cut(s)	74
HaeIII	GGCC	2 cut(s)	50, 519
HapII	CCGG	1 cut(s)	35
HinfI	GANTC	4 cut(s)	23, 224, 305, 326
HpaII	CCGG	1 cut(s)	35
Hpy166II	GTNNAC	3 cut(s)	140, 336, 530
Hpy188I	TCNGA	5 cut(s)	28, 205, 304, 310, 487
Hpy188III	TCNNGA	4 cut(s)	91, 119, 194, 281
Hpy8I	GTNNAC	3 cut(s)	140, 336, 530
Hpy99I	CGWCG	1 cut(s)	138
HpyAV	CCTTC	1 cut(s)	382
HpyCH4III	ACNGT	1 cut(s)	534
HpyCH4IV	ACGT	1 cut(s)	133
HpyCH4V	TGCA	3 cut(s)	275, 451, 470
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
HpyF3I	CTNAG	5 cut(s)	80, 309, 339, 364, 424
HpySE526I	ACGT	1 cut(s)	133
KpnI	GGTACC	1 cut(s)	458
Kzo9I	GATC	1 cut(s)	461
LmnI	GCTCC	2 cut(s)	40, 93
Lsp1109I	GCAGC	1 cut(s)	255
LweI	GCATC	3 cut(s)	234, 284, 364
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	1 cut(s)	133
MalI	GATC	1 cut(s)	463
MboI	GATC	1 cut(s)	461
MboII	GAAGA	3 cut(s)	26, 331, 501
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	1 cut(s)	418
MlyI	GAGTC	3 cut(s)	17, 299, 320
MmeI	TCCRAC	2 cut(s)	327, 510
MnlI	CCTC	8 cut(s)	31, 211, 233, 304, 308, 414, 512, 515
MroXI	GAANNNNTTC	1 cut(s)	189
MseI	TTAA	1 cut(s)	524
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	109
Mva1269I	GAATGC	1 cut(s)	453
MvaI	CCWGG	1 cut(s)	109
MwoI	GCNNNNNNNGC	1 cut(s)	40
NdeII	GATC	1 cut(s)	461
NlaIV	GGNNCC	2 cut(s)	149, 456
NmeAIII	GCCGAG	1 cut(s)	76
PaqCI	CACCTGC	1 cut(s)	406
PceI	AGGCCT	1 cut(s)	519
PctI	GAATGC	1 cut(s)	453
PdmI	GAANNNNTTC	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	224
PkrI	GCNGC	1 cut(s)	270
PleI	GAGTC	3 cut(s)	17, 299, 320
PpsI	GAGTC	3 cut(s)	17, 299, 320
Psp124BI	GAGCTC	1 cut(s)	45
Psp6I	CCWGG	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	107
PspN4I	GGNNCC	2 cut(s)	149, 456
PspPI	GGNCC	1 cut(s)	147
PstI	CTGCAG	1 cut(s)	472
RsaI	GTAC	1 cut(s)	456
RsaNI	GTAC	1 cut(s)	455
SacI	GAGCTC	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	524
SatI	GCNGC	1 cut(s)	269
Sau3AI	GATC	1 cut(s)	461
Sau96I	GGNCC	1 cut(s)	147
SchI	GAGTC	3 cut(s)	17, 299, 320
ScrFI	CCNGG	1 cut(s)	109
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	9 cut(s)	45, 90, 136, 203, 211, 270, 400, 456, 460
SfaNI	GCATC	3 cut(s)	234, 284, 364
SfcI	CTRYAG	1 cut(s)	468
SinI	GGWCC	1 cut(s)	147
Sse9I	AATT	1 cut(s)	418
SseBI	AGGCCT	1 cut(s)	519
SspMI	CTAG	1 cut(s)	459
SstI	GAGCTC	1 cut(s)	45
StuI	AGGCCT	1 cut(s)	519
StyD4I	CCNGG	1 cut(s)	107
TaaI	ACNGT	1 cut(s)	534
TaiI	ACGT	1 cut(s)	136
TaqI	TCGA	1 cut(s)	5
TaqII	GACCGA	1 cut(s)	338
TasI	AATT	1 cut(s)	418
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	1 cut(s)	524
Tru9I	TTAA	1 cut(s)	524
TscAI	CASTG	1 cut(s)	477
TseI	GCWGC	1 cut(s)	268
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	1 cut(s)	477
VpaK11BI	GGWCC	1 cut(s)	147
XapI	RAATTY	1 cut(s)	418
XmiI	GTMKAC	2 cut(s)	139, 529
XmnI	GAANNNNTTC	1 cut(s)	189
XspI	CTAG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.