Rorug02G0113300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0009464
Physical Location & Seq
Forward (+)
9704558 .. 9705717
1160 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0113300.1

Sequence Viewer

Length: 870 bp
ATGGCTGCCAAGTACCCTGTCAGATCAATCAGCTTGCCCTCAAGGTCTCACCCAACAACTGTTAGAGTTGAAGAAGAGCTCAGTAGGCTCCAACCATGGGAGTCAACTTCATCTGCTTCAACATCAGACTCAATCTGTAGAGGTCTATCTGGTCTTGAAGAGTTGTATGATTGTGTTGATGATCTTCTCCAAATGACATCAACCCAACAGCTACTCTCTCAACACCAACAAGAGAAATGCATGGATGAGTTGTTGGATGGATCAGTGAAGCTTCTAGACATATGTGGGATCACAAGGGATTTCATGTTACAAATCAAAGAACATGTCTTTGCTCTTCAATCTGCTCTTCGGAGAAGAAAGGGAGACTCAAGCATTGAAACTAGCATTGCCAACTACACTAGCTTCAGCAAGAAAATGAAGAAGGATGCCAAGAAATTGATCTCACAGTTGAAACAAGCAAACAATAAAATTGGATTATCACAACCTCTAGAGCAAGATCAGCATCTCGCCGCAGTGATTAGGGTTCTCCGACAAGTTTGTGCAAAGAACATGTCCATCTTCCAATCTCTCTTGGTGTTCTTGGCTGTTCCAGTTTCCAAGTCAAACAAGTGGTCTTTGGTGTCAAAGTTGATGCACAAAGGAGTCGTAGCATTTGAATCTCAAGCAGACATTAATGGGCATGAGCTGGATGGTGTGGATTCTGCTCTATCCTCACTATGCAAATCTGCTGAAGTTGAGAAGATTCAAAGTGCACATAAGAAATTGGAGGCTTTGGAAGACTGCATTGAAGGCCTTGAGAGTGGTTTGGAGAGTGTATTTAAGCGCTTGATCAAAACAAGAGCTTCTCTTTTGAACATAATCTCACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

289

Amino Acids

32.13

Weight (kDa)

8.1

Isoelectric Point (pI)

60.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 48 - 286 2.3e-90 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 510
AclWI GGATC 2 cut(s) 268, 296
AcuI CTGAAG 2 cut(s) 388, 750
AfaI GTAC 1 cut(s) 14
AfeI AGCGCT 1 cut(s) 824
AfiI CCNNNNNNNGG 1 cut(s) 97
AflIII ACRYGT 2 cut(s) 322, 549
AluBI AGCT 7 cut(s) 33, 79, 211, 271, 402, 685, 842
AluI AGCT 7 cut(s) 33, 79, 211, 271, 402, 685, 842
Alw21I GWGCWC 2 cut(s) 81, 754
Alw26I GTCTC 2 cut(s) 51, 357
Alw44I GTGCAC 1 cut(s) 750
AlwI GGATC 2 cut(s) 268, 296
Aor51HI AGCGCT 1 cut(s) 824
AoxI GGCC 1 cut(s) 790
ApaLI GTGCAC 1 cut(s) 750
ApeKI GCWGC 1 cut(s) 5
ArsI GACNNNNNNTTYG 6 cut(s) 309, 341, 536, 568, 596, 628
AseI ATTAAT 1 cut(s) 672
AspLEI GCGC 1 cut(s) 825
AsuHPI GGTGA 1 cut(s) 41
BaeGI GKGCMC 1 cut(s) 754
BanII GRGCYC 1 cut(s) 81
BbsI GAAGAC 1 cut(s) 783
Bbv12I GWGCWC 2 cut(s) 81, 754
BccI CCATC 3 cut(s) 251, 563, 683
BclI TGATCA 1 cut(s) 828
BcoDI GTCTC 2 cut(s) 51, 357
BfaI CTAG 4 cut(s) 275, 381, 399, 488
BfmI CTRYAG 1 cut(s) 136
BfoI RGCGCY 1 cut(s) 826
BisI GCNGC 2 cut(s) 6, 510
BlsI GCNGC 2 cut(s) 7, 511
BmiI GGNNCC 1 cut(s) 89
BmsI GCATC 3 cut(s) 415, 511, 621
BpiI GAAGAC 1 cut(s) 783
BpuEI CTTGAG 4 cut(s) 25, 352, 645, 815
BsaBI GATNNNNATC 1 cut(s) 501
BsaI GGTCTC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 95
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 590
Bse3DI GCAATG 1 cut(s) 384
Bse8I GATNNNNATC 1 cut(s) 501
BseDI CCNNGG 1 cut(s) 95
BseGI GGATG 4 cut(s) 250, 262, 430, 694
BseJI GATNNNNATC 1 cut(s) 501
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 1 cut(s) 94
BseNI ACTGG 1 cut(s) 590
BseSI GKGCMC 1 cut(s) 754
BshFI GGCC 1 cut(s) 792
BsiHKAI GWGCWC 2 cut(s) 81, 754
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 2 cut(s) 51, 357
BsnI GGCC 1 cut(s) 792
Bso31I GGTCTC 1 cut(s) 51
Bsp1286I GDGCHC 2 cut(s) 81, 754
Bsp143I GATC 7 cut(s) 23, 181, 260, 288, 438, 496, 828
Bsp19I CCATGG 1 cut(s) 95
BspACI CCGC 1 cut(s) 510
BspANI GGCC 1 cut(s) 792
BspCNI CTCAG 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 89
BspPI GGATC 2 cut(s) 268, 296
BspQI GCTCTTC 3 cut(s) 69, 339, 351
BspTNI GGTCTC 1 cut(s) 51
BsrDI GCAATG 1 cut(s) 384
BsrI ACTGG 1 cut(s) 590
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 7 cut(s) 23, 181, 260, 288, 438, 496, 828
BssT1I CCWWGG 1 cut(s) 95
Bst4CI ACNGT 2 cut(s) 61, 447
Bst6I CTCTTC 4 cut(s) 69, 153, 339, 351
BstC8I GCNNGC 1 cut(s) 35
BstDEI CTNAG 1 cut(s) 80
BstDSI CCRYGG 1 cut(s) 95
BstF5I GGATG 4 cut(s) 250, 262, 430, 694
BstH2I RGCGCY 1 cut(s) 826
BstHHI GCGC 1 cut(s) 825
BstKTI GATC 7 cut(s) 26, 184, 263, 291, 441, 499, 831
BstMAI GTCTC 2 cut(s) 51, 357
BstMBI GATC 7 cut(s) 23, 181, 260, 288, 438, 496, 828
BstMWI GCNNNNNNNGC 3 cut(s) 85, 499, 789
BstNSI RCATGY 2 cut(s) 326, 553
BstSFI CTRYAG 1 cut(s) 136
BstSLI GKGCMC 1 cut(s) 754
BstV2I GAAGAC 1 cut(s) 783
BsuRI GGCC 1 cut(s) 792
BtgI CCRYGG 1 cut(s) 95
BtsCI GGATG 4 cut(s) 250, 262, 430, 694
BtsI GCAGTG 1 cut(s) 519
BtsIMutI CAGTG 2 cut(s) 270, 519
Cac8I GCNNGC 1 cut(s) 35
CfoI GCGC 1 cut(s) 825
Csp6I GTAC 1 cut(s) 13
CviAII CATG 6 cut(s) 96, 241, 304, 323, 550, 680
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 1 cut(s) 80
DpnI GATC 7 cut(s) 25, 183, 262, 290, 440, 498, 830
DpnII GATC 7 cut(s) 23, 181, 260, 288, 438, 496, 828
Eam1104I CTCTTC 4 cut(s) 69, 153, 339, 351
EarI CTCTTC 4 cut(s) 69, 153, 339, 351
Ecl136II GAGCTC 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 95
Eco147I AGGCCT 1 cut(s) 792
Eco24I GRGCYC 1 cut(s) 81
Eco31I GGTCTC 1 cut(s) 51
Eco47III AGCGCT 1 cut(s) 824
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 2 cut(s) 388, 750
EcoICRI GAGCTC 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 95
EcoT22I ATGCAT 1 cut(s) 242
EcoT38I GRGCYC 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 95
FaeI CATG 6 cut(s) 99, 244, 307, 326, 553, 683
FatI CATG 6 cut(s) 95, 240, 303, 322, 549, 679
FauNDI CATATG 1 cut(s) 281
FbaI TGATCA 1 cut(s) 828
Fnu4HI GCNGC 2 cut(s) 6, 510
FokI GGATG 4 cut(s) 257, 269, 437, 701
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 2 cut(s) 6, 510
FspBI CTAG 4 cut(s) 275, 381, 399, 488
GlaI GCGC 1 cut(s) 824
GluI GCNGC 2 cut(s) 6, 510
HaeII RGCGCY 1 cut(s) 826
HaeIII GGCC 1 cut(s) 792
HhaI GCGC 1 cut(s) 825
Hin1II CATG 6 cut(s) 99, 244, 307, 326, 553, 683
Hin6I GCGC 1 cut(s) 823
HinP1I GCGC 1 cut(s) 823
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 7 cut(s) 101, 128, 365, 642, 656, 698, 742
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 2 cut(s) 105, 752
Hpy188I TCNGA 4 cut(s) 23, 127, 351, 530
Hpy188III TCNNGA 3 cut(s) 155, 275, 488
Hpy8I GTNNAC 2 cut(s) 105, 752
HpyAV CCTTC 2 cut(s) 415, 782
HpyCH4III ACNGT 2 cut(s) 61, 447
HpyCH4V TGCA 6 cut(s) 240, 542, 634, 720, 752, 783
HpyF10VI GCNNNNNNNGC 3 cut(s) 85, 499, 789
HpyF3I CTNAG 1 cut(s) 80
Hsp92II CATG 6 cut(s) 99, 244, 307, 326, 553, 683
HspAI GCGC 1 cut(s) 823
Ksp22I TGATCA 1 cut(s) 828
Kzo9I GATC 7 cut(s) 23, 181, 260, 288, 438, 496, 828
LguI GCTCTTC 3 cut(s) 69, 339, 351
LmnI GCTCC 1 cut(s) 93
LpnPI CCDG 4 cut(s) 30, 135, 603, 671
LweI GCATC 3 cut(s) 415, 511, 621
MaeI CTAG 4 cut(s) 275, 381, 399, 488
MaeIII GTNAC 1 cut(s) 306
MalI GATC 7 cut(s) 25, 183, 262, 290, 440, 498, 830
MboI GATC 7 cut(s) 23, 181, 260, 288, 438, 496, 828
MhlI GDGCHC 2 cut(s) 81, 754
MluCI AATT 3 cut(s) 434, 468, 761
MlyI GAGTC 4 cut(s) 110, 122, 359, 651
MmeI TCCRAC 3 cut(s) 115, 234, 553
MnlI CCTC 5 cut(s) 49, 134, 495, 721, 760
Mph1103I ATGCAT 1 cut(s) 242
MseI TTAA 2 cut(s) 672, 819
MwoI GCNNNNNNNGC 3 cut(s) 85, 499, 789
NcoI CCATGG 1 cut(s) 95
NdeI CATATG 1 cut(s) 281
NdeII GATC 7 cut(s) 23, 181, 260, 288, 438, 496, 828
NlaIII CATG 6 cut(s) 99, 244, 307, 326, 553, 683
NlaIV GGNNCC 1 cut(s) 89
NsiI ATGCAT 1 cut(s) 242
NspI RCATGY 2 cut(s) 326, 553
PceI AGGCCT 1 cut(s) 792
PciI ACATGT 2 cut(s) 322, 549
PciSI GCTCTTC 3 cut(s) 69, 339, 351
PfeI GAWTC 3 cut(s) 656, 698, 742
PkrI GCNGC 2 cut(s) 7, 511
PleI GAGTC 4 cut(s) 109, 122, 359, 650
PpsI GAGTC 4 cut(s) 109, 122, 359, 650
PscI ACATGT 2 cut(s) 322, 549
PshBI ATTAAT 1 cut(s) 672
Psp124BI GAGCTC 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 89
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SacI GAGCTC 1 cut(s) 81
SapI GCTCTTC 3 cut(s) 69, 339, 351
SaqAI TTAA 2 cut(s) 672, 819
SatI GCNGC 2 cut(s) 6, 510
Sau3AI GATC 7 cut(s) 23, 181, 260, 288, 438, 496, 828
SchI GAGTC 4 cut(s) 110, 122, 359, 651
SduI GDGCHC 2 cut(s) 81, 754
SfaNI GCATC 3 cut(s) 415, 511, 621
SfcI CTRYAG 1 cut(s) 136
SmlI CTYRAG 4 cut(s) 40, 367, 660, 794
SmoI CTYRAG 4 cut(s) 40, 367, 660, 794
Sse9I AATT 3 cut(s) 434, 468, 761
SseBI AGGCCT 1 cut(s) 792
SsiI CCGC 1 cut(s) 510
SspMI CTAG 4 cut(s) 275, 381, 399, 488
SstI GAGCTC 1 cut(s) 81
StuI AGGCCT 1 cut(s) 792
StyI CCWWGG 1 cut(s) 95
TaaI ACNGT 2 cut(s) 61, 447
TasI AATT 3 cut(s) 434, 468, 761
TauI GCSGC 1 cut(s) 512
TfiI GAWTC 3 cut(s) 656, 698, 742
Tru1I TTAA 2 cut(s) 672, 819
Tru9I TTAA 2 cut(s) 672, 819
TscAI CASTG 2 cut(s) 270, 519
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 3 cut(s) 99, 292, 431
TspRI CASTG 2 cut(s) 270, 519
VneI GTGCAC 1 cut(s) 750
VspI ATTAAT 1 cut(s) 672
XbaI TCTAGA 2 cut(s) 274, 487
XceI RCATGY 2 cut(s) 326, 553
XspI CTAG 4 cut(s) 275, 381, 399, 488
Zsp2I ATGCAT 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.