Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009464

Physical Location & Seq

Genomic Coordinates Forward (+)

9185727 .. 9187375

Gene Structure 1649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g12540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGTCGAACGGAGAAGATTACGACTCGGACGCGCCGGAGGAGCTCACGGCCGATCAGGGAGTACAACAAGACCAAGAACTTAACAAGCTCCAGAAAGAGCACAAAGCCAGGGTGGTTCGTGAAGCAAAAGAACGTCGTAGACAATGGGCCCAAAAGAAAACACCCAAGAAAACACCAAAGCCGTCTGTAAGTGTTCAAGATGCCTCTGAACCTGAAGCAAACCAAGAATCTTTGGGTAATGGAGGGATGCTTCCAAGCAACATCGTTGAGCTGCTTGCAGCTCGTGAGAAGCAAAAGTTCCTCTCGGACTCTGAGGATGAGAAGACCAACTCAAAGTCCACTAAGAAGAAGAAAAGGCTAAAAAGCTCAGGGGTGGATACTATTATATTGAAGGAGACACCTGCCCCTCAATGCTTGCAGAATTCCTTAGCGTTCTTGGAGAAAAGGAGAATGCAGGTACCTAGATCATCTGCAGTGTTGAACAACTCCAACCAAGCATTACGCCTCCTCTCTTCTTCGGGCTTGTTAAGTAAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

180

Amino Acids

19.99

Weight (kDa)

9.56

Isoelectric Point (pI)

63.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37090 AT4G37090
fragaria_vesca	FvH4_1g14550
malus_domestica	MD00G1067500.v1.1 MD02G1159200.v1.1
prunus_persica	Prupe.7G145000_v2.0.a1 Prupe.7G145000_v2.0.a1
pyrus_communis	pycom02g12540
rosa_chinensis	RchiOBHm_Chr2g0103301
rosa_laevigata	RLG00000017221
rosa_multiflora	Rmu_sc0006743.1_g000007 Rmu_sc0007612.1_g000039
rosa_roxburghii	Rroxscaffold_2G00139760
rosa_rugosa	Rorug02G0113300
rosa_samantha	Rh2AG162000 Rh2BG169000 Rh2CG168900 Rh2DG167800 Rh6AG014000 Rh6BG012600
rosa_wichuraiana	Rw0G019390 Rw2G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	409
Acc36I	ACCTGC	2 cut(s)	409, 445
Acc65I	GGTACC	1 cut(s)	457
AccB1I	GGYRCC	1 cut(s)	457
AccI	GTMKAC	1 cut(s)	139
AccII	CGCG	1 cut(s)	32
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	421
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	2 cut(s)	63, 459
AgsI	TTSAA	3 cut(s)	197, 391, 481
AjnI	CCWGG	1 cut(s)	107
AluBI	AGCT	5 cut(s)	43, 88, 271, 281, 366
AluI	AGCT	5 cut(s)	43, 88, 271, 281, 366
Alw21I	GWGCWC	2 cut(s)	45, 102
Alw26I	GTCTC	1 cut(s)	389
AoxI	GGCC	2 cut(s)	48, 147
ApaI	GGGCCC	1 cut(s)	151
ApeKI	GCWGC	2 cut(s)	271, 278
ApoI	RAATTY	1 cut(s)	421
Asp718I	GGTACC	1 cut(s)	457
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	2 cut(s)	147, 148
BaeGI	GKGCMC	1 cut(s)	151
BanI	GGYRCC	1 cut(s)	457
BanII	GRGCYC	2 cut(s)	45, 151
BauI	CACGAG	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	329
Bbv12I	GWGCWC	2 cut(s)	45, 102
BbvI	GCAGC	2 cut(s)	258, 290
BceAI	ACGGC	2 cut(s)	63, 166
BciT130I	CCWGG	1 cut(s)	109
BciVI	GTATCC	1 cut(s)	370
BcoDI	GTCTC	1 cut(s)	389
BfaI	CTAG	1 cut(s)	462
BfmI	CTRYAG	1 cut(s)	471
BfuAI	ACCTGC	2 cut(s)	409, 445
BfuI	GTATCC	1 cut(s)	370
BisI	GCNGC	2 cut(s)	272, 279
BlsI	GCNGC	2 cut(s)	273, 280
Bme1390I	CCNGG	1 cut(s)	109
BmgT120I	GGNCC	2 cut(s)	147, 148
BmiI	GGNNCC	2 cut(s)	149, 459
BmrFI	CCNGG	1 cut(s)	109
BmsI	GCATC	2 cut(s)	190, 237
BpiI	GAAGAC	1 cut(s)	329
BpmI	CTGGAG	1 cut(s)	74
Bpu10I	CCTNAGC	2 cut(s)	367, 427
BsaJI	CCNNGG	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	109
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	2 cut(s)	252, 322
BseMII	CTCAG	2 cut(s)	303, 381
BseRI	GAGGAG	2 cut(s)	53, 497
BseSI	GKGCMC	1 cut(s)	151
BseX3I	CGGCCG	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	258, 290
Bsh1236I	CGCG	1 cut(s)	32
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	2 cut(s)	50, 149
BshNI	GGYRCC	1 cut(s)	457
BsiEI	CGRYCG	1 cut(s)	51
BsiHKAI	GWGCWC	2 cut(s)	45, 102
BsiSI	CCGG	1 cut(s)	35
BsmAI	GTCTC	1 cut(s)	389
BsmI	GAATGC	1 cut(s)	456
BsnI	GGCC	2 cut(s)	50, 149
Bsp120I	GGGCCC	1 cut(s)	147
Bsp1286I	GDGCHC	3 cut(s)	45, 102, 151
Bsp143I	GATC	2 cut(s)	52, 464
BspANI	GGCC	2 cut(s)	50, 149
BspCNI	CTCAG	2 cut(s)	304, 380
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	2 cut(s)	149, 459
BspMAI	CTGCAG	1 cut(s)	475
BspMI	ACCTGC	2 cut(s)	409, 445
BspT107I	GGYRCC	1 cut(s)	457
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	2 cut(s)	52, 464
BssSI	CACGAG	1 cut(s)	282
Bst2BI	CACGAG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	109
Bst6I	CTCTTC	1 cut(s)	517
BstC8I	GCNNGC	2 cut(s)	276, 416
BstDEI	CTNAG	4 cut(s)	312, 342, 367, 427
BstF5I	GGATG	2 cut(s)	252, 322
BstFNI	CGCG	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	2 cut(s)	55, 467
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	2 cut(s)	52, 464
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstNI	CCWGG	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	107
BstSFI	CTRYAG	1 cut(s)	471
BstSLI	GKGCMC	1 cut(s)	151
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	2 cut(s)	258, 290
BstV2I	GAAGAC	1 cut(s)	329
BstZI	CGGCCG	1 cut(s)	48
BsuI	GTATCC	1 cut(s)	370
BsuRI	GGCC	2 cut(s)	50, 149
BtsCI	GGATG	2 cut(s)	252, 322
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	1 cut(s)	480
BveI	ACCTGC	2 cut(s)	409, 445
Cac8I	GCNNGC	2 cut(s)	276, 416
CfoI	GCGC	1 cut(s)	34
Cfr13I	GGNCC	2 cut(s)	147, 148
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	2 cut(s)	62, 458
CviQI	GTAC	2 cut(s)	62, 458
DdeI	CTNAG	4 cut(s)	312, 342, 367, 427
DpnI	GATC	2 cut(s)	54, 466
DpnII	GATC	2 cut(s)	52, 464
EaeI	YGGCCR	1 cut(s)	48
EagI	CGGCCG	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	517
EarI	CTCTTC	1 cut(s)	517
Ecl136II	GAGCTC	1 cut(s)	43
EclXI	CGGCCG	1 cut(s)	48
Eco24I	GRGCYC	2 cut(s)	45, 151
Eco52I	CGGCCG	1 cut(s)	48
Eco53kI	GAGCTC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	234
EcoICRI	GAGCTC	1 cut(s)	43
EcoRI	GAATTC	1 cut(s)	421
EcoRII	CCWGG	1 cut(s)	107
EcoT38I	GRGCYC	2 cut(s)	45, 151
FaiI	YATR	1 cut(s)	386
FblI	GTMKAC	1 cut(s)	139
Fnu4HI	GCNGC	2 cut(s)	272, 279
FokI	GGATG	2 cut(s)	259, 329
FriOI	GRGCYC	2 cut(s)	45, 151
Fsp4HI	GCNGC	2 cut(s)	272, 279
FspBI	CTAG	1 cut(s)	462
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	2 cut(s)	272, 279
GsuI	CTGGAG	1 cut(s)	74
HaeIII	GGCC	2 cut(s)	50, 149
HapII	CCGG	1 cut(s)	35
HgaI	GACGC	1 cut(s)	38
HhaI	GCGC	1 cut(s)	34
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HinfI	GANTC	3 cut(s)	23, 227, 308
HpaII	CCGG	1 cut(s)	35
Hpy166II	GTNNAC	2 cut(s)	140, 339
Hpy188I	TCNGA	4 cut(s)	28, 208, 307, 313
Hpy188III	TCNNGA	4 cut(s)	91, 119, 197, 284
Hpy8I	GTNNAC	2 cut(s)	140, 339
Hpy99I	CGWCG	1 cut(s)	138
HpyAV	CCTTC	1 cut(s)	385
HpyCH4IV	ACGT	1 cut(s)	133
HpyCH4V	TGCA	4 cut(s)	278, 418, 454, 473
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
HpyF3I	CTNAG	4 cut(s)	312, 342, 367, 427
HpySE526I	ACGT	1 cut(s)	133
HspAI	GCGC	1 cut(s)	32
KpnI	GGTACC	1 cut(s)	461
Kzo9I	GATC	2 cut(s)	52, 464
LmnI	GCTCC	2 cut(s)	40, 93
LpnPI	CCDG	9 cut(s)	41, 48, 94, 104, 121, 225, 354, 414, 440
Lsp1109I	GCAGC	2 cut(s)	258, 290
LweI	GCATC	2 cut(s)	190, 237
MaeI	CTAG	1 cut(s)	462
MaeII	ACGT	1 cut(s)	133
MalI	GATC	2 cut(s)	54, 466
MboI	GATC	2 cut(s)	52, 464
MboII	GAAGA	6 cut(s)	26, 334, 358, 361, 504, 507
MhlI	GDGCHC	3 cut(s)	45, 102, 151
MluCI	AATT	1 cut(s)	421
MlyI	GAGTC	2 cut(s)	17, 302
MmeI	TCCRAC	1 cut(s)	513
MnlI	CCTC	8 cut(s)	31, 214, 236, 307, 311, 417, 515, 518
MseI	TTAA	2 cut(s)	81, 527
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	109
Mva1269I	GAATGC	1 cut(s)	456
MvaI	CCWGG	1 cut(s)	109
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	40
NdeII	GATC	2 cut(s)	52, 464
NlaIV	GGNNCC	2 cut(s)	149, 459
PaqCI	CACCTGC	1 cut(s)	409
PctI	GAATGC	1 cut(s)	456
PfeI	GAWTC	1 cut(s)	227
PkrI	GCNGC	2 cut(s)	273, 280
PleI	GAGTC	2 cut(s)	17, 302
PpsI	GAGTC	2 cut(s)	17, 302
Psp124BI	GAGCTC	1 cut(s)	45
Psp6I	CCWGG	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	107
PspN4I	GGNNCC	2 cut(s)	149, 459
PspOMI	GGGCCC	1 cut(s)	147
PspPI	GGNCC	2 cut(s)	147, 148
PstI	CTGCAG	1 cut(s)	475
RsaI	GTAC	2 cut(s)	63, 459
RsaNI	GTAC	2 cut(s)	62, 458
SacI	GAGCTC	1 cut(s)	45
SaqAI	TTAA	2 cut(s)	81, 527
SatI	GCNGC	2 cut(s)	272, 279
Sau3AI	GATC	2 cut(s)	52, 464
Sau96I	GGNCC	2 cut(s)	147, 148
SchI	GAGTC	2 cut(s)	17, 302
ScrFI	CCNGG	1 cut(s)	109
SduI	GDGCHC	3 cut(s)	45, 102, 151
SfaNI	GCATC	2 cut(s)	190, 237
SfcI	CTRYAG	1 cut(s)	471
Sse9I	AATT	1 cut(s)	421
SspMI	CTAG	1 cut(s)	462
SstI	GAGCTC	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	107
TaiI	ACGT	1 cut(s)	136
TaqI	TCGA	1 cut(s)	5
TasI	AATT	1 cut(s)	421
TatI	WGTACW	1 cut(s)	61
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	2 cut(s)	81, 527
Tru9I	TTAA	2 cut(s)	81, 527
TscAI	CASTG	1 cut(s)	480
TseI	GCWGC	2 cut(s)	271, 278
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	1 cut(s)	480
XapI	RAATTY	1 cut(s)	421
XmiI	GTMKAC	1 cut(s)	139
XspI	CTAG	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.