Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007612.1

Orthogroup ID

OG0009464

Physical Location & Seq

Genomic Coordinates Forward (+)

101729 .. 102016

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007612.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

atgtcggacagagaagattacgactccgacgcgccggaggagttcacagccgagcagggaatacaacaggaacaagaactgagtaagcttcagaaagagaataaggcgagggttgctcgtgaaggaaaagaacgtcgtagaaaatgggcccagaagaaaacaccacggaaagctactgttgaaagtgttcaagatgtttctgaaaatgaaacacaccaagaatcttccatgggcactgcaagatgtttcttctcgatgtatgcttctgtattgttattctctcactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

95

Amino Acids

11.04

Weight (kDa)

5.72

Isoelectric Point (pI)

66.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37090 AT4G37090
fragaria_vesca	FvH4_1g14550
malus_domestica	MD00G1067500.v1.1 MD02G1159200.v1.1
prunus_persica	Prupe.7G145000_v2.0.a1 Prupe.7G145000_v2.0.a1
pyrus_communis	pycom02g12540
rosa_chinensis	RchiOBHm_Chr2g0103301
rosa_laevigata	RLG00000017221
rosa_multiflora	Rmu_sc0006743.1_g000007 Rmu_sc0007612.1_g000039
rosa_roxburghii	Rroxscaffold_2G00139760
rosa_rugosa	Rorug02G0113300
rosa_samantha	Rh2AG162000 Rh2BG169000 Rh2CG168900 Rh2DG167800 Rh6AG014000 Rh6BG012600
rosa_wichuraiana	Rw0G019390 Rw2G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	32
AcuI	CTGAAG	1 cut(s)	74
AgsI	TTSAA	2 cut(s)	182, 191
AluBI	AGCT	2 cut(s)	88, 173
AluI	AGCT	2 cut(s)	88, 173
AoxI	GGCC	1 cut(s)	147
ApaI	GGGCCC	1 cut(s)	151
Asp700I	GAANNNNTTC	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	2 cut(s)	147, 148
BaeGI	GKGCMC	2 cut(s)	151, 236
BanII	GRGCYC	1 cut(s)	151
BauI	CACGAG	1 cut(s)	117
BmgT120I	GGNCC	2 cut(s)	147, 148
BmiI	GGNNCC	1 cut(s)	149
BplI	GAGNNNNNCTC	2 cut(s)	100, 132
BsaJI	CCNNGG	2 cut(s)	164, 228
BseDI	CCNNGG	2 cut(s)	164, 228
BseMII	CTCAG	1 cut(s)	71
BseRI	GAGGAG	1 cut(s)	53
BseSI	GKGCMC	2 cut(s)	151, 236
Bsh1236I	CGCG	1 cut(s)	32
BshFI	GGCC	1 cut(s)	149
BsiSI	CCGG	1 cut(s)	35
BsnI	GGCC	1 cut(s)	149
Bsp120I	GGGCCC	1 cut(s)	147
Bsp1286I	GDGCHC	2 cut(s)	151, 236
Bsp19I	CCATGG	1 cut(s)	228
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	72
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	1 cut(s)	149
BssECI	CCNNGG	2 cut(s)	164, 228
BssSI	CACGAG	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	228
Bst2BI	CACGAG	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	178
BstDEI	CTNAG	1 cut(s)	80
BstDSI	CCRYGG	2 cut(s)	164, 228
BstFNI	CGCG	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstSLI	GKGCMC	2 cut(s)	151, 236
BstUI	CGCG	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	149
BtgI	CCRYGG	2 cut(s)	164, 228
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	2 cut(s)	234, 283
CfoI	GCGC	1 cut(s)	34
Cfr13I	GGNCC	2 cut(s)	147, 148
CseI	GACGC	1 cut(s)	38
CviAII	CATG	1 cut(s)	229
CviJI	RGCY	4 cut(s)	50, 88, 149, 173
CviKI_1	RGCY	4 cut(s)	50, 88, 149, 173
DdeI	CTNAG	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	228
Eco24I	GRGCYC	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	1 cut(s)	232
FaiI	YATR	2 cut(s)	230, 261
FatI	CATG	1 cut(s)	228
FriOI	GRGCYC	1 cut(s)	151
GlaI	GCGC	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	1 cut(s)	35
HgaI	GACGC	1 cut(s)	38
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	1 cut(s)	232
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	2 cut(s)	23, 221
HpaII	CCGG	1 cut(s)	35
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188I	TCNGA	4 cut(s)	7, 28, 93, 202
Hpy188III	TCNNGA	3 cut(s)	119, 191, 253
Hpy8I	GTNNAC	1 cut(s)	45
Hpy99I	CGWCG	2 cut(s)	32, 138
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4IV	ACGT	1 cut(s)	133
HpyCH4V	TGCA	1 cut(s)	239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	1 cut(s)	80
HpySE526I	ACGT	1 cut(s)	133
Hsp92II	CATG	1 cut(s)	232
HspAI	GCGC	1 cut(s)	32
LpnPI	CCDG	4 cut(s)	41, 48, 53, 164
MaeII	ACGT	1 cut(s)	133
MboII	GAAGA	4 cut(s)	26, 166, 216, 241
MhlI	GDGCHC	2 cut(s)	151, 236
MlyI	GAGTC	1 cut(s)	17
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	2 cut(s)	31, 102
MroXI	GAANNNNTTC	1 cut(s)	186
MspI	CCGG	1 cut(s)	35
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	113
NcoI	CCATGG	1 cut(s)	228
NlaIII	CATG	1 cut(s)	232
NlaIV	GGNNCC	1 cut(s)	149
NmeAIII	GCCGAG	1 cut(s)	76
PdmI	GAANNNNTTC	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	221
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
PspN4I	GGNNCC	1 cut(s)	149
PspOMI	GGGCCC	1 cut(s)	147
PspPI	GGNCC	2 cut(s)	147, 148
Sau96I	GGNCC	2 cut(s)	147, 148
SchI	GAGTC	1 cut(s)	17
SduI	GDGCHC	2 cut(s)	151, 236
SetI	ASST	3 cut(s)	90, 136, 175
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	178
TaiI	ACGT	1 cut(s)	136
TaqI	TCGA	1 cut(s)	254
TfiI	GAWTC	1 cut(s)	221
TscAI	CASTG	1 cut(s)	241
TspDTI	ATGAA	1 cut(s)	222
TspGWI	ACGGA	1 cut(s)	181
TspRI	CASTG	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.